data_4MNB # _model_server_result.job_id QcaXchzqAbFY6EF-Tk7Lpw _model_server_result.datetime_utc '2024-10-17 23:57:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mnb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":103}' # _entry.id 4MNB # _exptl.entry_id 4MNB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 161.116 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT HEXAMMINE(III)' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4MNB _cell.length_a 28.7 _cell.length_b 53.4 _cell.length_c 40.8 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MNB _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N7 DG 2 A DG 2 1_555 E CO NCO . A NCO 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc2 B N7 DG 2 B DG 8 1_555 H CO NCO . B NCO 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc3 B OP2 DG 2 B DG 8 1_555 I NA NA . B NA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc4 B N7 DG 6 B DG 12 1_555 G CO NCO . B NCO 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? hydrog WATSON-CRICK hydrog1 A N1 DG 2 A DG 2 1_555 B N3 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 2 A DG 2 1_555 B O2 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 2 A DG 2 1_555 B N4 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DT 3 A DT 3 1_555 B N1 DA 4 B DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O4 DT 3 A DT 3 1_555 B N6 DA 4 B DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 DA 4 A DA 4 1_555 B N3 DT 3 B DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N6 DA 4 A DA 4 1_555 B O4 DT 3 B DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N3 DC 5 A DC 5 1_555 B N1 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N4 DC 5 A DC 5 1_555 B O6 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O2 DC 5 A DC 5 1_555 B N2 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Co H18 N6 3' _chem_comp.formula_weight 161.116 _chem_comp.id NCO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT HEXAMMINE(III)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CO N1 NCO sing 152 n n CO N2 NCO sing 153 n n CO N3 NCO sing 154 n n CO N4 NCO sing 155 n n CO N5 NCO sing 156 n n CO N6 NCO sing 157 n n N1 HN11 NCO sing 158 n n N1 HN12 NCO sing 159 n n N1 HN13 NCO sing 160 n n N2 HN21 NCO sing 161 n n N2 HN22 NCO sing 162 n n N2 HN23 NCO sing 163 n n N3 HN31 NCO sing 164 n n N3 HN32 NCO sing 165 n n N3 HN33 NCO sing 166 n n N4 HN41 NCO sing 167 n n N4 HN42 NCO sing 168 n n N4 HN43 NCO sing 169 n n N5 HN51 NCO sing 170 n n N5 HN52 NCO sing 171 n n N5 HN53 NCO sing 172 n n N6 HN61 NCO sing 173 n n N6 HN62 NCO sing 174 n n N6 HN63 NCO sing 175 n n # _atom_sites.entry_id 4MNB _atom_sites.fract_transf_matrix[1][1] 0.034843 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018727 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02451 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 VAR A 1 101 1 VAR VAR . D 2 VAR A 1 102 1 VAR VAR . E 3 NCO A 1 103 1 NCO NCO . F 4 CO A 1 104 1 CO CO . G 3 NCO B 1 101 1 NCO NCO . H 3 NCO B 1 102 1 NCO NCO . I 5 NA B 1 103 1 NA NA . J 6 HOH A 1 201 2 HOH HOH . J 6 HOH A 2 202 3 HOH HOH . J 6 HOH A 3 203 6 HOH HOH . J 6 HOH A 4 204 8 HOH HOH . J 6 HOH A 5 205 9 HOH HOH . J 6 HOH A 6 206 12 HOH HOH . J 6 HOH A 7 207 14 HOH HOH . J 6 HOH A 8 208 15 HOH HOH . J 6 HOH A 9 209 16 HOH HOH . J 6 HOH A 10 210 17 HOH HOH . J 6 HOH A 11 211 18 HOH HOH . J 6 HOH A 12 212 23 HOH HOH . J 6 HOH A 13 213 24 HOH HOH . K 6 HOH B 1 201 1 HOH HOH . K 6 HOH B 2 202 4 HOH HOH . K 6 HOH B 3 203 5 HOH HOH . K 6 HOH B 4 204 7 HOH HOH . K 6 HOH B 5 205 10 HOH HOH . K 6 HOH B 6 206 11 HOH HOH . K 6 HOH B 7 207 13 HOH HOH . K 6 HOH B 8 208 19 HOH HOH . K 6 HOH B 9 209 20 HOH HOH . K 6 HOH B 10 210 21 HOH HOH . K 6 HOH B 11 211 22 HOH HOH . K 6 HOH B 12 212 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CO CO NCO . . . E 3 10.647 -14.444 -5.84 1 21.7 3 CO NCO 103 A 1 HETATM 2 N N1 NCO . . . E 3 11.006 -12.44 -5.983 1 20.83 ? N1 NCO 103 A 1 HETATM 3 N N3 NCO . . . E 3 8.748 -14.178 -6.511 1 21.75 ? N3 NCO 103 A 1 HETATM 4 N N4 NCO . . . E 3 9.972 -14.064 -3.823 1 36.23 ? N4 NCO 103 A 1 HETATM 5 N N5 NCO . . . E 3 12.529 -14.716 -5.169 1 24.08 ? N5 NCO 103 A 1 HETATM 6 N N6 NCO . . . E 3 10.207 -16.514 -5.634 1 43.92 ? N6 NCO 103 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 6 #