data_4MNG # _model_server_result.job_id D1rEfDYo1YvQ7IEHTmpUTQ _model_server_result.datetime_utc '2024-11-14 13:41:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mng # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 4MNG # _exptl.entry_id 4MNG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4MNG _cell.length_a 229.333 _cell.length_b 229.333 _cell.length_c 52.646 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MNG _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H,I,J,O,Q 1 1 C,D,F,K,L,M,N,P,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 K N N ? 4 L N N ? 4 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 25 B CYS 25 1_555 A SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 103 A CYS 102 1_555 B SG CYS 167 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 B SG CYS 207 A CYS 206 1_555 B SG CYS 262 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 C SG CYS 25 D CYS 25 1_555 C SG CYS 80 D CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 D SG CYS 103 C CYS 102 1_555 D SG CYS 167 C CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 D SG CYS 207 C CYS 206 1_555 D SG CYS 262 C CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 E SG CYS 23 E CYS 23 1_555 E SG CYS 91 E CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 E SG CYS 162 E CYS 162 1_555 E SG CYS 234 E CYS 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 F SG CYS 23 F CYS 23 1_555 F SG CYS 91 F CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 F SG CYS 162 F CYS 162 1_555 F SG CYS 234 F CYS 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 B ND2 ASN 21 A ASN 20 1_555 G C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale2 B ND2 ASN 43 A ASN 42 1_555 H C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 B ND2 ASN 164 A ASN 163 1_555 I C1 NAG . A NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale4 D ND2 ASN 21 C ASN 20 1_555 K C1 NAG . C NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale5 D ND2 ASN 43 C ASN 42 1_555 L C1 NAG . C NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale6 D ND2 ASN 164 C ASN 163 1_555 M C1 NAG . C NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 389 n n C1 O1 NAG sing 390 n n C1 O5 NAG sing 391 n n C1 H1 NAG sing 392 n n C2 C3 NAG sing 393 n n C2 N2 NAG sing 394 n n C2 H2 NAG sing 395 n n C3 C4 NAG sing 396 n n C3 O3 NAG sing 397 n n C3 H3 NAG sing 398 n n C4 C5 NAG sing 399 n n C4 O4 NAG sing 400 n n C4 H4 NAG sing 401 n n C5 C6 NAG sing 402 n n C5 O5 NAG sing 403 n n C5 H5 NAG sing 404 n n C6 O6 NAG sing 405 n n C6 H61 NAG sing 406 n n C6 H62 NAG sing 407 n n C7 C8 NAG sing 408 n n C7 N2 NAG sing 409 n n C7 O7 NAG doub 410 n n C8 H81 NAG sing 411 n n C8 H82 NAG sing 412 n n C8 H83 NAG sing 413 n n N2 HN2 NAG sing 414 n n O1 HO1 NAG sing 415 n n O3 HO3 NAG sing 416 n n O4 HO4 NAG sing 417 n n O6 HO6 NAG sing 418 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4MNG _atom_sites.fract_transf_matrix[1][1] 0.00436 _atom_sites.fract_transf_matrix[1][2] 0.002518 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005035 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018995 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAG A 1 301 301 NAG NAG . H 4 NAG A 1 302 302 NAG NAG . I 4 NAG A 1 303 303 NAG NAG . J 5 CIS A 1 304 304 CIS CIS . K 4 NAG C 1 301 301 NAG NAG . L 4 NAG C 1 302 302 NAG NAG . M 4 NAG C 1 303 303 NAG NAG . N 5 CIS C 1 304 304 CIS CIS . O 6 HOH A 1 401 401 HOH HOH . O 6 HOH A 2 402 402 HOH HOH . O 6 HOH A 3 403 403 HOH HOH . O 6 HOH A 4 404 404 HOH HOH . O 6 HOH A 5 405 405 HOH HOH . O 6 HOH A 6 406 406 HOH HOH . O 6 HOH A 7 407 407 HOH HOH . P 6 HOH C 1 401 401 HOH HOH . P 6 HOH C 2 402 402 HOH HOH . P 6 HOH C 3 403 403 HOH HOH . P 6 HOH C 4 404 404 HOH HOH . Q 6 HOH E 1 301 301 HOH HOH . Q 6 HOH E 2 302 302 HOH HOH . R 6 HOH F 1 301 301 HOH HOH . R 6 HOH F 2 302 302 HOH HOH . R 6 HOH F 3 303 303 HOH HOH . R 6 HOH F 4 304 304 HOH HOH . R 6 HOH F 5 305 305 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 4 -22.182 88.96 25.496 1 86.2 ? C1 NAG 301 A 1 HETATM 2 C C2 NAG . . . G 4 -23.3 88.697 26.496 1 88.47 ? C2 NAG 301 A 1 HETATM 3 C C3 NAG . . . G 4 -23.414 87.274 26.966 1 80.63 ? C3 NAG 301 A 1 HETATM 4 C C4 NAG . . . G 4 -23.318 86.337 25.799 1 82.25 ? C4 NAG 301 A 1 HETATM 5 C C5 NAG . . . G 4 -22.115 86.71 24.997 1 81.98 ? C5 NAG 301 A 1 HETATM 6 C C6 NAG . . . G 4 -22.023 85.805 23.815 1 80.29 ? C6 NAG 301 A 1 HETATM 7 C C7 NAG . . . G 4 -24.252 90.047 28.184 1 87.04 ? C7 NAG 301 A 1 HETATM 8 C C8 NAG . . . G 4 -24.073 90.891 29.392 1 79.24 ? C8 NAG 301 A 1 HETATM 9 N N2 NAG . . . G 4 -23.169 89.506 27.676 1 92.89 ? N2 NAG 301 A 1 HETATM 10 O O3 NAG . . . G 4 -24.702 87.199 27.474 1 87.8 ? O3 NAG 301 A 1 HETATM 11 O O4 NAG . . . G 4 -23.151 85.01 26.208 1 81.17 ? O4 NAG 301 A 1 HETATM 12 O O5 NAG . . . G 4 -22.283 87.989 24.494 1 95.67 ? O5 NAG 301 A 1 HETATM 13 O O6 NAG . . . G 4 -21.482 86.614 22.837 1 84 ? O6 NAG 301 A 1 HETATM 14 O O7 NAG . . . G 4 -25.352 89.886 27.697 1 97.17 ? O7 NAG 301 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 590 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #