data_4MNX # _model_server_result.job_id ejaTZeBuC7cuAbi9QvOHCg _model_server_result.datetime_utc '2024-11-26 13:06:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mnx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":101}' # _entry.id 4MNX # _exptl.entry_id 4MNX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 255.313 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "1,1',1''-(1,3,5-triazinane-1,3,5-triyl)tripropan-1-one" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4MNX _cell.length_a 52.45 _cell.length_b 53.5 _cell.length_c 79.58 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MNX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 31 A CYS 42 1_555 A SG CYS 47 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 39 A CYS 50 1_555 A SG CYS 110 A CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf3 A SG CYS 135 A CYS 136 1_555 A SG CYS 204 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? disulf ? disulf4 A SG CYS 167 A CYS 168 1_555 A SG CYS 183 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 A SG CYS 194 A CYS 191 1_555 A SG CYS 222 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 B SG CYS 2 B CYS 2 1_555 F C19 29N . B 29N 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 ? covale ? covale2 B SG CYS 7 B CYS 7 1_555 F C25 29N . B 29N 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 ? covale ? covale3 B SG CYS 12 B CYS 12 1_555 F C16 29N . B 29N 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.828 ? covale ? covale4 B C LYS 13 B LYS 13 1_555 B N NH2 14 B NH2 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 sing # _chem_comp.formula 'C12 H21 N3 O3' _chem_comp.formula_weight 255.313 _chem_comp.id 29N _chem_comp.mon_nstd_flag . _chem_comp.name "1,1',1''-(1,3,5-triazinane-1,3,5-triyl)tripropan-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "1,1',1''-(1,3,5-triazinane-1,3,5-triyl)triprop-2-en-1-one, bound form" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 C14 29N sing 1 n n O15 C13 29N doub 2 n n C14 C13 29N sing 3 n n C13 N3 29N sing 4 n n C16 C8 29N sing 5 n n C8 C7 29N sing 6 n n N3 C2 29N sing 7 n n N3 C4 29N sing 8 n n C2 N1 29N sing 9 n n C7 N1 29N sing 10 n n C7 O9 29N doub 11 n n N1 C6 29N sing 12 n n C4 N5 29N sing 13 n n C19 C11 29N sing 14 n n N5 C6 29N sing 15 n n N5 C10 29N sing 16 n n C11 C10 29N sing 17 n n C10 O12 29N doub 18 n n C2 H1 29N sing 19 n n C2 H2 29N sing 20 n n C4 H3 29N sing 21 n n C4 H4 29N sing 22 n n C6 H5 29N sing 23 n n C6 H6 29N sing 24 n n C8 H7 29N sing 25 n n C8 H8 29N sing 26 n n C11 H9 29N sing 27 n n C11 H10 29N sing 28 n n C14 H11 29N sing 29 n n C14 H12 29N sing 30 n n C16 H13 29N sing 31 n n C16 H14 29N sing 32 n n C16 H15 29N sing 33 n n C19 H16 29N sing 34 n n C19 H17 29N sing 35 n n C19 H18 29N sing 36 n n C25 H19 29N sing 37 n n C25 H20 29N sing 38 n n C25 H21 29N sing 39 n n # _atom_sites.entry_id 4MNX _atom_sites.fract_transf_matrix[1][1] 0.019066 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018692 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012566 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 301 1 SO4 SO4 . D 3 SO4 A 1 302 2 SO4 SO4 . E 4 GOL A 1 303 1 GOL GOL . F 5 29N B 1 101 15 29N TAT . G 6 HOH A 1 401 1 HOH HOH . G 6 HOH A 2 402 3 HOH HOH . G 6 HOH A 3 403 4 HOH HOH . G 6 HOH A 4 404 5 HOH HOH . G 6 HOH A 5 405 6 HOH HOH . G 6 HOH A 6 406 7 HOH HOH . G 6 HOH A 7 407 9 HOH HOH . G 6 HOH A 8 408 10 HOH HOH . G 6 HOH A 9 409 11 HOH HOH . G 6 HOH A 10 410 12 HOH HOH . G 6 HOH A 11 411 13 HOH HOH . G 6 HOH A 12 412 14 HOH HOH . G 6 HOH A 13 413 15 HOH HOH . G 6 HOH A 14 414 17 HOH HOH . G 6 HOH A 15 415 18 HOH HOH . G 6 HOH A 16 416 20 HOH HOH . G 6 HOH A 17 417 21 HOH HOH . G 6 HOH A 18 418 23 HOH HOH . G 6 HOH A 19 419 24 HOH HOH . G 6 HOH A 20 420 25 HOH HOH . G 6 HOH A 21 421 28 HOH HOH . G 6 HOH A 22 422 29 HOH HOH . G 6 HOH A 23 423 31 HOH HOH . G 6 HOH A 24 424 32 HOH HOH . G 6 HOH A 25 425 33 HOH HOH . G 6 HOH A 26 426 34 HOH HOH . G 6 HOH A 27 427 35 HOH HOH . G 6 HOH A 28 428 36 HOH HOH . G 6 HOH A 29 429 38 HOH HOH . G 6 HOH A 30 430 39 HOH HOH . G 6 HOH A 31 431 40 HOH HOH . G 6 HOH A 32 432 42 HOH HOH . G 6 HOH A 33 433 43 HOH HOH . G 6 HOH A 34 434 44 HOH HOH . G 6 HOH A 35 435 45 HOH HOH . G 6 HOH A 36 436 46 HOH HOH . G 6 HOH A 37 437 47 HOH HOH . G 6 HOH A 38 438 49 HOH HOH . G 6 HOH A 39 439 50 HOH HOH . G 6 HOH A 40 440 51 HOH HOH . G 6 HOH A 41 441 52 HOH HOH . G 6 HOH A 42 442 53 HOH HOH . G 6 HOH A 43 443 54 HOH HOH . G 6 HOH A 44 444 55 HOH HOH . G 6 HOH A 45 445 56 HOH HOH . G 6 HOH A 46 446 57 HOH HOH . G 6 HOH A 47 447 58 HOH HOH . G 6 HOH A 48 448 59 HOH HOH . G 6 HOH A 49 449 61 HOH HOH . G 6 HOH A 50 450 62 HOH HOH . G 6 HOH A 51 451 63 HOH HOH . G 6 HOH A 52 452 64 HOH HOH . G 6 HOH A 53 453 66 HOH HOH . G 6 HOH A 54 454 67 HOH HOH . G 6 HOH A 55 455 68 HOH HOH . G 6 HOH A 56 456 69 HOH HOH . G 6 HOH A 57 457 70 HOH HOH . G 6 HOH A 58 458 71 HOH HOH . G 6 HOH A 59 459 72 HOH HOH . G 6 HOH A 60 460 73 HOH HOH . G 6 HOH A 61 461 74 HOH HOH . G 6 HOH A 62 462 77 HOH HOH . G 6 HOH A 63 463 78 HOH HOH . G 6 HOH A 64 464 79 HOH HOH . G 6 HOH A 65 465 80 HOH HOH . G 6 HOH A 66 466 83 HOH HOH . G 6 HOH A 67 467 85 HOH HOH . G 6 HOH A 68 468 86 HOH HOH . G 6 HOH A 69 469 88 HOH HOH . G 6 HOH A 70 470 89 HOH HOH . G 6 HOH A 71 471 90 HOH HOH . G 6 HOH A 72 472 92 HOH HOH . G 6 HOH A 73 473 93 HOH HOH . G 6 HOH A 74 474 94 HOH HOH . G 6 HOH A 75 475 95 HOH HOH . G 6 HOH A 76 476 96 HOH HOH . G 6 HOH A 77 477 97 HOH HOH . G 6 HOH A 78 478 99 HOH HOH . G 6 HOH A 79 479 100 HOH HOH . G 6 HOH A 80 480 101 HOH HOH . G 6 HOH A 81 481 102 HOH HOH . G 6 HOH A 82 482 103 HOH HOH . G 6 HOH A 83 483 104 HOH HOH . G 6 HOH A 84 484 105 HOH HOH . G 6 HOH A 85 485 107 HOH HOH . G 6 HOH A 86 486 108 HOH HOH . G 6 HOH A 87 487 109 HOH HOH . G 6 HOH A 88 488 110 HOH HOH . G 6 HOH A 89 489 111 HOH HOH . G 6 HOH A 90 490 112 HOH HOH . G 6 HOH A 91 491 113 HOH HOH . G 6 HOH A 92 492 114 HOH HOH . G 6 HOH A 93 493 115 HOH HOH . G 6 HOH A 94 494 116 HOH HOH . G 6 HOH A 95 495 117 HOH HOH . G 6 HOH A 96 496 118 HOH HOH . G 6 HOH A 97 497 119 HOH HOH . G 6 HOH A 98 498 120 HOH HOH . G 6 HOH A 99 499 121 HOH HOH . G 6 HOH A 100 500 123 HOH HOH . G 6 HOH A 101 501 124 HOH HOH . G 6 HOH A 102 502 126 HOH HOH . G 6 HOH A 103 503 127 HOH HOH . G 6 HOH A 104 504 129 HOH HOH . G 6 HOH A 105 505 130 HOH HOH . G 6 HOH A 106 506 131 HOH HOH . G 6 HOH A 107 507 133 HOH HOH . G 6 HOH A 108 508 135 HOH HOH . G 6 HOH A 109 509 137 HOH HOH . G 6 HOH A 110 510 138 HOH HOH . G 6 HOH A 111 511 139 HOH HOH . G 6 HOH A 112 512 140 HOH HOH . G 6 HOH A 113 513 141 HOH HOH . G 6 HOH A 114 514 142 HOH HOH . G 6 HOH A 115 515 143 HOH HOH . G 6 HOH A 116 516 144 HOH HOH . G 6 HOH A 117 517 145 HOH HOH . G 6 HOH A 118 518 148 HOH HOH . G 6 HOH A 119 519 149 HOH HOH . H 6 HOH B 1 201 27 HOH HOH . H 6 HOH B 2 202 30 HOH HOH . H 6 HOH B 3 203 37 HOH HOH . H 6 HOH B 4 204 41 HOH HOH . H 6 HOH B 5 205 65 HOH HOH . H 6 HOH B 6 206 76 HOH HOH . H 6 HOH B 7 207 82 HOH HOH . H 6 HOH B 8 208 106 HOH HOH . H 6 HOH B 9 209 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 29N . . . F 5 25.638 19.292 -9.8 1 24.1 ? N1 29N 101 B 1 HETATM 2 C C2 29N . . . F 5 25.046 18.209 -10.518 1 23.36 ? C2 29N 101 B 1 HETATM 3 N N3 29N . . . F 5 26.12 17.286 -10.728 1 25.21 ? N3 29N 101 B 1 HETATM 4 C C4 29N . . . F 5 26.614 16.664 -9.502 1 25.77 ? C4 29N 101 B 1 HETATM 5 N N5 29N . . . F 5 27.209 17.805 -8.78 1 25.16 ? N5 29N 101 B 1 HETATM 6 C C6 29N . . . F 5 26.28 18.916 -8.544 1 25.47 ? C6 29N 101 B 1 HETATM 7 C C7 29N . . . F 5 25.678 20.669 -10.279 1 23.92 ? C7 29N 101 B 1 HETATM 8 C C8 29N . . . F 5 25.044 21.04 -11.576 1 23.88 ? C8 29N 101 B 1 HETATM 9 O O9 29N . . . F 5 26.23 21.539 -9.585 1 26.77 ? O9 29N 101 B 1 HETATM 10 C C10 29N . . . F 5 28.608 17.984 -8.402 1 26.29 ? C10 29N 101 B 1 HETATM 11 C C11 29N . . . F 5 29.704 16.983 -8.551 1 25.38 ? C11 29N 101 B 1 HETATM 12 O O12 29N . . . F 5 28.894 19.041 -7.862 1 29.08 ? O12 29N 101 B 1 HETATM 13 C C13 29N . . . F 5 26.776 17.207 -12.046 1 26.06 ? C13 29N 101 B 1 HETATM 14 C C14 29N . . . F 5 27.96 16.276 -12.267 1 24.77 ? C14 29N 101 B 1 HETATM 15 O O15 29N . . . F 5 26.322 17.887 -12.991 1 28.73 ? O15 29N 101 B 1 HETATM 16 C C16 29N . . . F 5 25.043 22.535 -11.721 1 24.23 ? C16 29N 101 B 1 HETATM 17 C C19 29N . . . F 5 31.009 17.627 -8.898 1 26.46 ? C19 29N 101 B 1 HETATM 18 C C25 29N . . . F 5 27.959 15.69 -13.662 1 24 ? C25 29N 101 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #