data_4MP3 # _model_server_result.job_id f8vYjlX80VixiAP0cbRWvQ _model_server_result.datetime_utc '2025-06-23 02:35:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mp3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 4MP3 # _exptl.entry_id 4MP3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4MP3 _cell.length_a 62.887 _cell.length_b 62.887 _cell.length_c 157.633 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MP3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 62.887 62.887 78.8165 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 7 A GLU 4 1_555 A N MSE 8 A MSE 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MSE 8 A MSE 5 1_555 A N LEU 9 A LEU 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C ALA 66 A ALA 63 1_555 A N MSE 67 A MSE 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 67 A MSE 64 1_555 A N PRO 68 A PRO 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale5 A C ASN 94 A ASN 91 1_555 A N MSE 95 A MSE 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 A C MSE 95 A MSE 92 1_555 A N GLU 96 A GLU 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale7 A C VAL 115 A VAL 112 1_555 A N MSE 116 A MSE 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale8 A C MSE 116 A MSE 113 1_555 A N GLU 117 A GLU 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale9 A C SER 123 A SER 120 1_555 A N MSE 124 A MSE 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 A C MSE 124 A MSE 121 1_555 A N ARG 125 A ARG 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale11 A C SER 160 A SER 157 1_555 A N MSE 161 A MSE 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale12 A C MSE 161 A MSE 158 1_555 A N LEU 162 A LEU 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale13 A C ILE 240 A ILE 237 1_555 A N MSE 241 A MSE 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale14 A C MSE 241 A MSE 238 1_555 A N ASP 242 A ASP 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale15 A C PRO 309 A PRO 306 1_555 A N MSE 310 A MSE 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale16 A C MSE 310 A MSE 307 1_555 A N GLY 311 A GLY 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale17 A C GLY 311 A GLY 308 1_555 A N MSE 312 A MSE 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale18 A C MSE 312 A MSE 309 1_555 A N ALA 313 A ALA 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4MP3 _atom_sites.fract_transf_matrix[1][1] 0.015902 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015902 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006344 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 400 SO4 SO4 . C 3 GOL A 1 402 402 GOL GOL . D 2 SO4 A 1 403 1 SO4 SO4 . E 4 HOH A 1 501 1 HOH HOH . E 4 HOH A 2 502 2 HOH HOH . E 4 HOH A 3 503 3 HOH HOH . E 4 HOH A 4 504 4 HOH HOH . E 4 HOH A 5 505 5 HOH HOH . E 4 HOH A 6 506 6 HOH HOH . E 4 HOH A 7 507 7 HOH HOH . E 4 HOH A 8 508 8 HOH HOH . E 4 HOH A 9 509 9 HOH HOH . E 4 HOH A 10 510 10 HOH HOH . E 4 HOH A 11 511 11 HOH HOH . E 4 HOH A 12 512 12 HOH HOH . E 4 HOH A 13 513 13 HOH HOH . E 4 HOH A 14 514 14 HOH HOH . E 4 HOH A 15 515 15 HOH HOH . E 4 HOH A 16 516 16 HOH HOH . E 4 HOH A 17 517 17 HOH HOH . E 4 HOH A 18 518 18 HOH HOH . E 4 HOH A 19 519 19 HOH HOH . E 4 HOH A 20 520 20 HOH HOH . E 4 HOH A 21 521 21 HOH HOH . E 4 HOH A 22 522 22 HOH HOH . E 4 HOH A 23 523 23 HOH HOH . E 4 HOH A 24 524 24 HOH HOH . E 4 HOH A 25 525 25 HOH HOH . E 4 HOH A 26 526 26 HOH HOH . E 4 HOH A 27 527 27 HOH HOH . E 4 HOH A 28 528 28 HOH HOH . E 4 HOH A 29 529 29 HOH HOH . E 4 HOH A 30 530 30 HOH HOH . E 4 HOH A 31 531 31 HOH HOH . E 4 HOH A 32 532 32 HOH HOH . E 4 HOH A 33 533 33 HOH HOH . E 4 HOH A 34 534 34 HOH HOH . E 4 HOH A 35 535 35 HOH HOH . E 4 HOH A 36 536 36 HOH HOH . E 4 HOH A 37 537 37 HOH HOH . E 4 HOH A 38 538 38 HOH HOH . E 4 HOH A 39 539 39 HOH HOH . E 4 HOH A 40 540 40 HOH HOH . E 4 HOH A 41 541 41 HOH HOH . E 4 HOH A 42 542 42 HOH HOH . E 4 HOH A 43 543 43 HOH HOH . E 4 HOH A 44 544 44 HOH HOH . E 4 HOH A 45 545 45 HOH HOH . E 4 HOH A 46 546 46 HOH HOH . E 4 HOH A 47 547 47 HOH HOH . E 4 HOH A 48 548 48 HOH HOH . E 4 HOH A 49 549 49 HOH HOH . E 4 HOH A 50 550 50 HOH HOH . E 4 HOH A 51 551 51 HOH HOH . E 4 HOH A 52 552 52 HOH HOH . E 4 HOH A 53 553 53 HOH HOH . E 4 HOH A 54 554 54 HOH HOH . E 4 HOH A 55 555 55 HOH HOH . E 4 HOH A 56 556 56 HOH HOH . E 4 HOH A 57 557 57 HOH HOH . E 4 HOH A 58 558 58 HOH HOH . E 4 HOH A 59 559 59 HOH HOH . E 4 HOH A 60 560 60 HOH HOH . E 4 HOH A 61 561 61 HOH HOH . E 4 HOH A 62 562 62 HOH HOH . E 4 HOH A 63 563 63 HOH HOH . E 4 HOH A 64 564 64 HOH HOH . E 4 HOH A 65 565 65 HOH HOH . E 4 HOH A 66 566 66 HOH HOH . E 4 HOH A 67 567 67 HOH HOH . E 4 HOH A 68 568 68 HOH HOH . E 4 HOH A 69 569 69 HOH HOH . E 4 HOH A 70 570 70 HOH HOH . E 4 HOH A 71 571 71 HOH HOH . E 4 HOH A 72 572 72 HOH HOH . E 4 HOH A 73 573 73 HOH HOH . E 4 HOH A 74 574 74 HOH HOH . E 4 HOH A 75 575 75 HOH HOH . E 4 HOH A 76 576 76 HOH HOH . E 4 HOH A 77 577 77 HOH HOH . E 4 HOH A 78 578 78 HOH HOH . E 4 HOH A 79 579 79 HOH HOH . E 4 HOH A 80 580 80 HOH HOH . E 4 HOH A 81 581 81 HOH HOH . E 4 HOH A 82 582 82 HOH HOH . E 4 HOH A 83 583 83 HOH HOH . E 4 HOH A 84 584 84 HOH HOH . E 4 HOH A 85 585 85 HOH HOH . E 4 HOH A 86 586 86 HOH HOH . E 4 HOH A 87 587 87 HOH HOH . E 4 HOH A 88 588 88 HOH HOH . E 4 HOH A 89 589 89 HOH HOH . E 4 HOH A 90 590 90 HOH HOH . E 4 HOH A 91 591 91 HOH HOH . E 4 HOH A 92 592 92 HOH HOH . E 4 HOH A 93 593 93 HOH HOH . E 4 HOH A 94 594 94 HOH HOH . E 4 HOH A 95 595 95 HOH HOH . E 4 HOH A 96 596 96 HOH HOH . E 4 HOH A 97 597 97 HOH HOH . E 4 HOH A 98 598 98 HOH HOH . E 4 HOH A 99 599 99 HOH HOH . E 4 HOH A 100 600 100 HOH HOH . E 4 HOH A 101 601 101 HOH HOH . E 4 HOH A 102 602 102 HOH HOH . E 4 HOH A 103 603 103 HOH HOH . E 4 HOH A 104 604 104 HOH HOH . E 4 HOH A 105 605 105 HOH HOH . E 4 HOH A 106 606 106 HOH HOH . E 4 HOH A 107 607 107 HOH HOH . E 4 HOH A 108 608 108 HOH HOH . E 4 HOH A 109 609 109 HOH HOH . E 4 HOH A 110 610 110 HOH HOH . E 4 HOH A 111 611 111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 20.722 12.39 45.468 1 36.65 ? C1 GOL 402 A 1 HETATM 2 O O1 GOL . . . C 3 20.704 12.494 46.894 1 43.47 ? O1 GOL 402 A 1 HETATM 3 C C2 GOL . . . C 3 22.062 11.892 44.943 1 39.06 ? C2 GOL 402 A 1 HETATM 4 O O2 GOL . . . C 3 21.889 11.168 43.728 1 41.16 ? O2 GOL 402 A 1 HETATM 5 C C3 GOL . . . C 3 22.778 10.977 45.918 1 42.23 ? C3 GOL 402 A 1 HETATM 6 O O3 GOL . . . C 3 21.918 9.981 46.476 1 58.16 ? O3 GOL 402 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #