data_4MP6 # _model_server_result.job_id KhhDpiL8BMWF4haGtMLipw _model_server_result.datetime_utc '2025-07-13 14:33:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mp6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":400}' # _entry.id 4MP6 # _exptl.entry_id 4MP6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4MP6 _cell.length_a 62.66 _cell.length_b 62.66 _cell.length_c 157.079 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MP6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 257 n n PA O2A NAD sing 258 n n PA O5B NAD sing 259 n n PA O3 NAD sing 260 n n O2A HOA2 NAD sing 261 n n O5B C5B NAD sing 262 n n C5B C4B NAD sing 263 n n C5B H51A NAD sing 264 n n C5B H52A NAD sing 265 n n C4B O4B NAD sing 266 n n C4B C3B NAD sing 267 n n C4B H4B NAD sing 268 n n O4B C1B NAD sing 269 n n C3B O3B NAD sing 270 n n C3B C2B NAD sing 271 n n C3B H3B NAD sing 272 n n O3B HO3A NAD sing 273 n n C2B O2B NAD sing 274 n n C2B C1B NAD sing 275 n n C2B H2B NAD sing 276 n n O2B HO2A NAD sing 277 n n C1B N9A NAD sing 278 n n C1B H1B NAD sing 279 n n N9A C8A NAD sing 280 n y N9A C4A NAD sing 281 n y C8A N7A NAD doub 282 n y C8A H8A NAD sing 283 n n N7A C5A NAD sing 284 n y C5A C6A NAD sing 285 n y C5A C4A NAD doub 286 n y C6A N6A NAD sing 287 n n C6A N1A NAD doub 288 n y N6A H61A NAD sing 289 n n N6A H62A NAD sing 290 n n N1A C2A NAD sing 291 n y C2A N3A NAD doub 292 n y C2A H2A NAD sing 293 n n N3A C4A NAD sing 294 n y O3 PN NAD sing 295 n n PN O1N NAD doub 296 n n PN O2N NAD sing 297 n n PN O5D NAD sing 298 n n O5D C5D NAD sing 299 n n C5D C4D NAD sing 300 n n C5D H51N NAD sing 301 n n C5D H52N NAD sing 302 n n C4D O4D NAD sing 303 n n C4D C3D NAD sing 304 n n C4D H4D NAD sing 305 n n O4D C1D NAD sing 306 n n C3D O3D NAD sing 307 n n C3D C2D NAD sing 308 n n C3D H3D NAD sing 309 n n O3D HO3N NAD sing 310 n n C2D O2D NAD sing 311 n n C2D C1D NAD sing 312 n n C2D H2D NAD sing 313 n n O2D HO2N NAD sing 314 n n C1D N1N NAD sing 315 n n C1D H1D NAD sing 316 n n N1N C2N NAD sing 317 n y N1N C6N NAD doub 318 n y C2N C3N NAD doub 319 n y C2N H2N NAD sing 320 n n C3N C7N NAD sing 321 n n C3N C4N NAD sing 322 n y C7N O7N NAD doub 323 n n C7N N7N NAD sing 324 n n N7N H71N NAD sing 325 n n N7N H72N NAD sing 326 n n C4N C5N NAD doub 327 n y C4N H4N NAD sing 328 n n C5N C6N NAD sing 329 n y C5N H5N NAD sing 330 n n C6N H6N NAD sing 331 n n # _atom_sites.entry_id 4MP6 _atom_sites.fract_transf_matrix[1][1] 0.015959 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015959 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006366 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 400 400 NAD NAD . C 3 CIT A 1 401 401 CIT CIT . D 4 HOH A 1 501 1 HOH HOH . D 4 HOH A 2 502 2 HOH HOH . D 4 HOH A 3 503 3 HOH HOH . D 4 HOH A 4 504 4 HOH HOH . D 4 HOH A 5 505 5 HOH HOH . D 4 HOH A 6 506 6 HOH HOH . D 4 HOH A 7 507 7 HOH HOH . D 4 HOH A 8 508 8 HOH HOH . D 4 HOH A 9 509 9 HOH HOH . D 4 HOH A 10 510 10 HOH HOH . D 4 HOH A 11 511 11 HOH HOH . D 4 HOH A 12 512 12 HOH HOH . D 4 HOH A 13 513 13 HOH HOH . D 4 HOH A 14 514 14 HOH HOH . D 4 HOH A 15 515 15 HOH HOH . D 4 HOH A 16 516 16 HOH HOH . D 4 HOH A 17 517 17 HOH HOH . D 4 HOH A 18 518 18 HOH HOH . D 4 HOH A 19 519 19 HOH HOH . D 4 HOH A 20 520 20 HOH HOH . D 4 HOH A 21 521 21 HOH HOH . D 4 HOH A 22 522 22 HOH HOH . D 4 HOH A 23 523 23 HOH HOH . D 4 HOH A 24 524 24 HOH HOH . D 4 HOH A 25 525 25 HOH HOH . D 4 HOH A 26 526 26 HOH HOH . D 4 HOH A 27 527 27 HOH HOH . D 4 HOH A 28 528 28 HOH HOH . D 4 HOH A 29 529 29 HOH HOH . D 4 HOH A 30 530 30 HOH HOH . D 4 HOH A 31 531 31 HOH HOH . D 4 HOH A 32 532 32 HOH HOH . D 4 HOH A 33 533 33 HOH HOH . D 4 HOH A 34 534 34 HOH HOH . D 4 HOH A 35 535 35 HOH HOH . D 4 HOH A 36 536 36 HOH HOH . D 4 HOH A 37 537 37 HOH HOH . D 4 HOH A 38 538 38 HOH HOH . D 4 HOH A 39 539 39 HOH HOH . D 4 HOH A 40 540 40 HOH HOH . D 4 HOH A 41 541 41 HOH HOH . D 4 HOH A 42 542 42 HOH HOH . D 4 HOH A 43 543 43 HOH HOH . D 4 HOH A 44 544 44 HOH HOH . D 4 HOH A 45 545 45 HOH HOH . D 4 HOH A 46 546 46 HOH HOH . D 4 HOH A 47 547 47 HOH HOH . D 4 HOH A 48 548 48 HOH HOH . D 4 HOH A 49 549 49 HOH HOH . D 4 HOH A 50 550 50 HOH HOH . D 4 HOH A 51 551 51 HOH HOH . D 4 HOH A 52 552 52 HOH HOH . D 4 HOH A 53 553 53 HOH HOH . D 4 HOH A 54 554 54 HOH HOH . D 4 HOH A 55 555 55 HOH HOH . D 4 HOH A 56 556 56 HOH HOH . D 4 HOH A 57 557 57 HOH HOH . D 4 HOH A 58 558 58 HOH HOH . D 4 HOH A 59 559 59 HOH HOH . D 4 HOH A 60 560 60 HOH HOH . D 4 HOH A 61 561 61 HOH HOH . D 4 HOH A 62 562 62 HOH HOH . D 4 HOH A 63 563 63 HOH HOH . D 4 HOH A 64 564 64 HOH HOH . D 4 HOH A 65 565 65 HOH HOH . D 4 HOH A 66 566 66 HOH HOH . D 4 HOH A 67 567 67 HOH HOH . D 4 HOH A 68 568 68 HOH HOH . D 4 HOH A 69 569 69 HOH HOH . D 4 HOH A 70 570 70 HOH HOH . D 4 HOH A 71 571 71 HOH HOH . D 4 HOH A 72 572 72 HOH HOH . D 4 HOH A 73 573 73 HOH HOH . D 4 HOH A 74 574 74 HOH HOH . D 4 HOH A 75 575 75 HOH HOH . D 4 HOH A 76 576 76 HOH HOH . D 4 HOH A 77 577 77 HOH HOH . D 4 HOH A 78 578 78 HOH HOH . D 4 HOH A 79 579 79 HOH HOH . D 4 HOH A 80 580 80 HOH HOH . D 4 HOH A 81 581 81 HOH HOH . D 4 HOH A 82 582 82 HOH HOH . D 4 HOH A 83 583 83 HOH HOH . D 4 HOH A 84 584 84 HOH HOH . D 4 HOH A 85 585 85 HOH HOH . D 4 HOH A 86 586 86 HOH HOH . D 4 HOH A 87 587 87 HOH HOH . D 4 HOH A 88 588 88 HOH HOH . D 4 HOH A 89 589 89 HOH HOH . D 4 HOH A 90 590 90 HOH HOH . D 4 HOH A 91 591 91 HOH HOH . D 4 HOH A 92 592 92 HOH HOH . D 4 HOH A 93 593 93 HOH HOH . D 4 HOH A 94 594 94 HOH HOH . D 4 HOH A 95 595 95 HOH HOH . D 4 HOH A 96 596 96 HOH HOH . D 4 HOH A 97 597 97 HOH HOH . D 4 HOH A 98 598 98 HOH HOH . D 4 HOH A 99 599 99 HOH HOH . D 4 HOH A 100 600 100 HOH HOH . D 4 HOH A 101 601 101 HOH HOH . D 4 HOH A 102 602 102 HOH HOH . D 4 HOH A 103 603 103 HOH HOH . D 4 HOH A 104 604 104 HOH HOH . D 4 HOH A 105 605 105 HOH HOH . D 4 HOH A 106 606 106 HOH HOH . D 4 HOH A 107 607 107 HOH HOH . D 4 HOH A 108 608 108 HOH HOH . D 4 HOH A 109 609 109 HOH HOH . D 4 HOH A 110 610 110 HOH HOH . D 4 HOH A 111 611 111 HOH HOH . D 4 HOH A 112 612 112 HOH HOH . D 4 HOH A 113 613 113 HOH HOH . D 4 HOH A 114 614 114 HOH HOH . D 4 HOH A 115 615 115 HOH HOH . D 4 HOH A 116 616 116 HOH HOH . D 4 HOH A 117 617 117 HOH HOH . D 4 HOH A 118 618 118 HOH HOH . D 4 HOH A 119 619 119 HOH HOH . D 4 HOH A 120 620 120 HOH HOH . D 4 HOH A 121 621 121 HOH HOH . D 4 HOH A 122 622 122 HOH HOH . D 4 HOH A 123 623 123 HOH HOH . D 4 HOH A 124 624 124 HOH HOH . D 4 HOH A 125 625 125 HOH HOH . D 4 HOH A 126 626 126 HOH HOH . D 4 HOH A 127 627 127 HOH HOH . D 4 HOH A 128 628 128 HOH HOH . D 4 HOH A 129 629 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 -20.841 9.726 7.107 1 26.37 ? PA NAD 400 A 1 HETATM 2 O O1A NAD . . . B 2 -20.747 9.234 8.537 1 26.56 ? O1A NAD 400 A 1 HETATM 3 O O2A NAD . . . B 2 -19.795 10.696 6.577 1 26.29 ? O2A NAD 400 A 1 HETATM 4 O O5B NAD . . . B 2 -22.302 10.419 6.944 1 27.66 ? O5B NAD 400 A 1 HETATM 5 C C5B NAD . . . B 2 -23.572 9.765 7.038 1 26.14 ? C5B NAD 400 A 1 HETATM 6 C C4B NAD . . . B 2 -24.606 10.885 7.237 1 29.32 ? C4B NAD 400 A 1 HETATM 7 O O4B NAD . . . B 2 -25.959 10.414 7.218 1 30.18 ? O4B NAD 400 A 1 HETATM 8 C C3B NAD . . . B 2 -24.439 11.578 8.594 1 31.63 ? C3B NAD 400 A 1 HETATM 9 O O3B NAD . . . B 2 -24.517 12.994 8.402 1 33.56 ? O3B NAD 400 A 1 HETATM 10 C C2B NAD . . . B 2 -25.583 11.07 9.44 1 33.35 ? C2B NAD 400 A 1 HETATM 11 O O2B NAD . . . B 2 -25.925 11.996 10.483 1 37.24 ? O2B NAD 400 A 1 HETATM 12 C C1B NAD . . . B 2 -26.672 10.871 8.386 1 32.49 ? C1B NAD 400 A 1 HETATM 13 N N9A NAD . . . B 2 -27.724 9.866 8.719 1 31.29 ? N9A NAD 400 A 1 HETATM 14 C C8A NAD . . . B 2 -27.546 8.674 9.337 1 29.8 ? C8A NAD 400 A 1 HETATM 15 N N7A NAD . . . B 2 -28.721 7.994 9.413 1 29.36 ? N7A NAD 400 A 1 HETATM 16 C C5A NAD . . . B 2 -29.672 8.768 8.854 1 29.88 ? C5A NAD 400 A 1 HETATM 17 C C6A NAD . . . B 2 -31.128 8.673 8.622 1 30.89 ? C6A NAD 400 A 1 HETATM 18 N N6A NAD . . . B 2 -31.799 7.579 9.021 1 32.11 ? N6A NAD 400 A 1 HETATM 19 N N1A NAD . . . B 2 -31.756 9.699 7.985 1 31.89 ? N1A NAD 400 A 1 HETATM 20 C C2A NAD . . . B 2 -31.098 10.789 7.571 1 29.98 ? C2A NAD 400 A 1 HETATM 21 N N3A NAD . . . B 2 -29.762 10.933 7.758 1 32.38 ? N3A NAD 400 A 1 HETATM 22 C C4A NAD . . . B 2 -29.017 9.989 8.391 1 29.58 ? C4A NAD 400 A 1 HETATM 23 O O3 NAD . . . B 2 -20.905 8.431 6.123 1 24.14 ? O3 NAD 400 A 1 HETATM 24 P PN NAD . . . B 2 -20.438 8.536 4.571 1 24.24 ? PN NAD 400 A 1 HETATM 25 O O1N NAD . . . B 2 -18.946 8.307 4.445 1 26.55 ? O1N NAD 400 A 1 HETATM 26 O O2N NAD . . . B 2 -20.825 9.852 3.93 1 26.02 ? O2N NAD 400 A 1 HETATM 27 O O5D NAD . . . B 2 -21.141 7.258 3.928 1 24.56 ? O5D NAD 400 A 1 HETATM 28 C C5D NAD . . . B 2 -22.538 7.255 3.643 1 25.24 ? C5D NAD 400 A 1 HETATM 29 C C4D NAD . . . B 2 -22.937 5.884 3.115 1 23.75 ? C4D NAD 400 A 1 HETATM 30 O O4D NAD . . . B 2 -22.463 5.672 1.781 1 24.74 ? O4D NAD 400 A 1 HETATM 31 C C3D NAD . . . B 2 -22.489 4.684 3.948 1 22.29 ? C3D NAD 400 A 1 HETATM 32 O O3D NAD . . . B 2 -23.704 3.989 4.221 1 22.7 ? O3D NAD 400 A 1 HETATM 33 C C2D NAD . . . B 2 -21.689 3.806 2.986 1 23.17 ? C2D NAD 400 A 1 HETATM 34 O O2D NAD . . . B 2 -21.861 2.393 3.283 1 23.93 ? O2D NAD 400 A 1 HETATM 35 C C1D NAD . . . B 2 -22.295 4.241 1.639 1 23.92 ? C1D NAD 400 A 1 HETATM 36 N N1N NAD . . . B 2 -21.461 3.941 0.456 1 23.72 ? N1N NAD 400 A 1 HETATM 37 C C2N NAD . . . B 2 -21.999 3.192 -0.524 1 21.36 ? C2N NAD 400 A 1 HETATM 38 C C3N NAD . . . B 2 -21.252 2.893 -1.654 1 21.5 ? C3N NAD 400 A 1 HETATM 39 C C7N NAD . . . B 2 -21.846 2.028 -2.741 1 22.38 ? C7N NAD 400 A 1 HETATM 40 O O7N NAD . . . B 2 -23.049 1.714 -2.728 1 23.68 ? O7N NAD 400 A 1 HETATM 41 N N7N NAD . . . B 2 -21.011 1.581 -3.674 1 18.94 ? N7N NAD 400 A 1 HETATM 42 C C4N NAD . . . B 2 -19.932 3.35 -1.771 1 20.24 ? C4N NAD 400 A 1 HETATM 43 C C5N NAD . . . B 2 -19.411 4.129 -0.754 1 23.61 ? C5N NAD 400 A 1 HETATM 44 C C6N NAD . . . B 2 -20.208 4.423 0.364 1 22.75 ? C6N NAD 400 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 44 #