data_4MP8 # _model_server_result.job_id FHtiOZx8jGrx4RklmZKyeg _model_server_result.datetime_utc '2024-11-07 06:10:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mp8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":400}' # _entry.id 4MP8 # _exptl.entry_id 4MP8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4MP8 _cell.length_a 62.402 _cell.length_b 62.402 _cell.length_c 157.687 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MP8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 245 n n PA O2A NAD sing 246 n n PA O5B NAD sing 247 n n PA O3 NAD sing 248 n n O2A HOA2 NAD sing 249 n n O5B C5B NAD sing 250 n n C5B C4B NAD sing 251 n n C5B H51A NAD sing 252 n n C5B H52A NAD sing 253 n n C4B O4B NAD sing 254 n n C4B C3B NAD sing 255 n n C4B H4B NAD sing 256 n n O4B C1B NAD sing 257 n n C3B O3B NAD sing 258 n n C3B C2B NAD sing 259 n n C3B H3B NAD sing 260 n n O3B HO3A NAD sing 261 n n C2B O2B NAD sing 262 n n C2B C1B NAD sing 263 n n C2B H2B NAD sing 264 n n O2B HO2A NAD sing 265 n n C1B N9A NAD sing 266 n n C1B H1B NAD sing 267 n n N9A C8A NAD sing 268 n y N9A C4A NAD sing 269 n y C8A N7A NAD doub 270 n y C8A H8A NAD sing 271 n n N7A C5A NAD sing 272 n y C5A C6A NAD sing 273 n y C5A C4A NAD doub 274 n y C6A N6A NAD sing 275 n n C6A N1A NAD doub 276 n y N6A H61A NAD sing 277 n n N6A H62A NAD sing 278 n n N1A C2A NAD sing 279 n y C2A N3A NAD doub 280 n y C2A H2A NAD sing 281 n n N3A C4A NAD sing 282 n y O3 PN NAD sing 283 n n PN O1N NAD doub 284 n n PN O2N NAD sing 285 n n PN O5D NAD sing 286 n n O5D C5D NAD sing 287 n n C5D C4D NAD sing 288 n n C5D H51N NAD sing 289 n n C5D H52N NAD sing 290 n n C4D O4D NAD sing 291 n n C4D C3D NAD sing 292 n n C4D H4D NAD sing 293 n n O4D C1D NAD sing 294 n n C3D O3D NAD sing 295 n n C3D C2D NAD sing 296 n n C3D H3D NAD sing 297 n n O3D HO3N NAD sing 298 n n C2D O2D NAD sing 299 n n C2D C1D NAD sing 300 n n C2D H2D NAD sing 301 n n O2D HO2N NAD sing 302 n n C1D N1N NAD sing 303 n n C1D H1D NAD sing 304 n n N1N C2N NAD sing 305 n y N1N C6N NAD doub 306 n y C2N C3N NAD doub 307 n y C2N H2N NAD sing 308 n n C3N C7N NAD sing 309 n n C3N C4N NAD sing 310 n y C7N O7N NAD doub 311 n n C7N N7N NAD sing 312 n n N7N H71N NAD sing 313 n n N7N H72N NAD sing 314 n n C4N C5N NAD doub 315 n y C4N H4N NAD sing 316 n n C5N C6N NAD sing 317 n y C5N H5N NAD sing 318 n n C6N H6N NAD sing 319 n n # _atom_sites.entry_id 4MP8 _atom_sites.fract_transf_matrix[1][1] 0.016025 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016025 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006342 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 400 400 NAD NAD . C 3 MLI A 1 401 401 MLI MLI . D 4 HOH A 1 501 1 HOH HOH . D 4 HOH A 2 502 2 HOH HOH . D 4 HOH A 3 503 3 HOH HOH . D 4 HOH A 4 504 4 HOH HOH . D 4 HOH A 5 505 5 HOH HOH . D 4 HOH A 6 506 6 HOH HOH . D 4 HOH A 7 507 7 HOH HOH . D 4 HOH A 8 508 8 HOH HOH . D 4 HOH A 9 509 9 HOH HOH . D 4 HOH A 10 510 10 HOH HOH . D 4 HOH A 11 511 11 HOH HOH . D 4 HOH A 12 512 12 HOH HOH . D 4 HOH A 13 513 13 HOH HOH . D 4 HOH A 14 514 14 HOH HOH . D 4 HOH A 15 515 15 HOH HOH . D 4 HOH A 16 516 16 HOH HOH . D 4 HOH A 17 517 17 HOH HOH . D 4 HOH A 18 518 18 HOH HOH . D 4 HOH A 19 519 19 HOH HOH . D 4 HOH A 20 520 20 HOH HOH . D 4 HOH A 21 521 21 HOH HOH . D 4 HOH A 22 522 22 HOH HOH . D 4 HOH A 23 523 23 HOH HOH . D 4 HOH A 24 524 24 HOH HOH . D 4 HOH A 25 525 25 HOH HOH . D 4 HOH A 26 526 26 HOH HOH . D 4 HOH A 27 527 27 HOH HOH . D 4 HOH A 28 528 28 HOH HOH . D 4 HOH A 29 529 29 HOH HOH . D 4 HOH A 30 530 30 HOH HOH . D 4 HOH A 31 531 31 HOH HOH . D 4 HOH A 32 532 32 HOH HOH . D 4 HOH A 33 533 33 HOH HOH . D 4 HOH A 34 534 34 HOH HOH . D 4 HOH A 35 535 35 HOH HOH . D 4 HOH A 36 536 36 HOH HOH . D 4 HOH A 37 537 37 HOH HOH . D 4 HOH A 38 538 38 HOH HOH . D 4 HOH A 39 539 39 HOH HOH . D 4 HOH A 40 540 40 HOH HOH . D 4 HOH A 41 541 41 HOH HOH . D 4 HOH A 42 542 42 HOH HOH . D 4 HOH A 43 543 43 HOH HOH . D 4 HOH A 44 544 44 HOH HOH . D 4 HOH A 45 545 45 HOH HOH . D 4 HOH A 46 546 46 HOH HOH . D 4 HOH A 47 547 47 HOH HOH . D 4 HOH A 48 548 48 HOH HOH . D 4 HOH A 49 549 49 HOH HOH . D 4 HOH A 50 550 50 HOH HOH . D 4 HOH A 51 551 51 HOH HOH . D 4 HOH A 52 552 52 HOH HOH . D 4 HOH A 53 553 53 HOH HOH . D 4 HOH A 54 554 54 HOH HOH . D 4 HOH A 55 555 55 HOH HOH . D 4 HOH A 56 556 56 HOH HOH . D 4 HOH A 57 557 57 HOH HOH . D 4 HOH A 58 558 58 HOH HOH . D 4 HOH A 59 559 59 HOH HOH . D 4 HOH A 60 560 60 HOH HOH . D 4 HOH A 61 561 61 HOH HOH . D 4 HOH A 62 562 62 HOH HOH . D 4 HOH A 63 563 63 HOH HOH . D 4 HOH A 64 564 64 HOH HOH . D 4 HOH A 65 565 65 HOH HOH . D 4 HOH A 66 566 66 HOH HOH . D 4 HOH A 67 567 67 HOH HOH . D 4 HOH A 68 568 68 HOH HOH . D 4 HOH A 69 569 69 HOH HOH . D 4 HOH A 70 570 70 HOH HOH . D 4 HOH A 71 571 71 HOH HOH . D 4 HOH A 72 572 72 HOH HOH . D 4 HOH A 73 573 73 HOH HOH . D 4 HOH A 74 574 74 HOH HOH . D 4 HOH A 75 575 75 HOH HOH . D 4 HOH A 76 576 76 HOH HOH . D 4 HOH A 77 577 77 HOH HOH . D 4 HOH A 78 578 78 HOH HOH . D 4 HOH A 79 579 79 HOH HOH . D 4 HOH A 80 580 80 HOH HOH . D 4 HOH A 81 581 81 HOH HOH . D 4 HOH A 82 582 82 HOH HOH . D 4 HOH A 83 583 83 HOH HOH . D 4 HOH A 84 584 84 HOH HOH . D 4 HOH A 85 585 85 HOH HOH . D 4 HOH A 86 586 86 HOH HOH . D 4 HOH A 87 587 87 HOH HOH . D 4 HOH A 88 588 88 HOH HOH . D 4 HOH A 89 589 89 HOH HOH . D 4 HOH A 90 590 90 HOH HOH . D 4 HOH A 91 591 91 HOH HOH . D 4 HOH A 92 592 92 HOH HOH . D 4 HOH A 93 593 93 HOH HOH . D 4 HOH A 94 594 94 HOH HOH . D 4 HOH A 95 595 95 HOH HOH . D 4 HOH A 96 596 96 HOH HOH . D 4 HOH A 97 597 97 HOH HOH . D 4 HOH A 98 598 98 HOH HOH . D 4 HOH A 99 599 99 HOH HOH . D 4 HOH A 100 600 100 HOH HOH . D 4 HOH A 101 601 101 HOH HOH . D 4 HOH A 102 602 103 HOH HOH . D 4 HOH A 103 603 104 HOH HOH . D 4 HOH A 104 604 105 HOH HOH . D 4 HOH A 105 605 106 HOH HOH . D 4 HOH A 106 606 107 HOH HOH . D 4 HOH A 107 607 108 HOH HOH . D 4 HOH A 108 608 109 HOH HOH . D 4 HOH A 109 609 110 HOH HOH . D 4 HOH A 110 610 111 HOH HOH . D 4 HOH A 111 611 112 HOH HOH . D 4 HOH A 112 612 113 HOH HOH . D 4 HOH A 113 613 114 HOH HOH . D 4 HOH A 114 614 115 HOH HOH . D 4 HOH A 115 615 116 HOH HOH . D 4 HOH A 116 616 117 HOH HOH . D 4 HOH A 117 617 119 HOH HOH . D 4 HOH A 118 618 120 HOH HOH . D 4 HOH A 119 619 121 HOH HOH . D 4 HOH A 120 620 122 HOH HOH . D 4 HOH A 121 621 123 HOH HOH . D 4 HOH A 122 622 124 HOH HOH . D 4 HOH A 123 623 125 HOH HOH . D 4 HOH A 124 624 126 HOH HOH . D 4 HOH A 125 625 127 HOH HOH . D 4 HOH A 126 626 128 HOH HOH . D 4 HOH A 127 627 129 HOH HOH . D 4 HOH A 128 628 130 HOH HOH . D 4 HOH A 129 629 131 HOH HOH . D 4 HOH A 130 630 132 HOH HOH . D 4 HOH A 131 631 133 HOH HOH . D 4 HOH A 132 632 134 HOH HOH . D 4 HOH A 133 633 135 HOH HOH . D 4 HOH A 134 634 136 HOH HOH . D 4 HOH A 135 635 137 HOH HOH . D 4 HOH A 136 636 139 HOH HOH . D 4 HOH A 137 637 140 HOH HOH . D 4 HOH A 138 638 141 HOH HOH . D 4 HOH A 139 639 142 HOH HOH . D 4 HOH A 140 640 143 HOH HOH . D 4 HOH A 141 641 144 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 -20.379 9.787 6.809 1 24.57 ? PA NAD 400 A 1 HETATM 2 O O1A NAD . . . B 2 -20.339 9.227 8.208 1 26.79 ? O1A NAD 400 A 1 HETATM 3 O O2A NAD . . . B 2 -19.356 10.833 6.382 1 24.16 ? O2A NAD 400 A 1 HETATM 4 O O5B NAD . . . B 2 -21.83 10.513 6.688 1 26.77 ? O5B NAD 400 A 1 HETATM 5 C C5B NAD . . . B 2 -23.085 9.897 6.9 1 24.07 ? C5B NAD 400 A 1 HETATM 6 C C4B NAD . . . B 2 -24.062 11.065 7.121 1 26.47 ? C4B NAD 400 A 1 HETATM 7 O O4B NAD . . . B 2 -25.362 10.527 7.208 1 25.37 ? O4B NAD 400 A 1 HETATM 8 C C3B NAD . . . B 2 -23.818 11.818 8.445 1 28.82 ? C3B NAD 400 A 1 HETATM 9 O O3B NAD . . . B 2 -23.795 13.23 8.213 1 27.04 ? O3B NAD 400 A 1 HETATM 10 C C2B NAD . . . B 2 -24.93 11.344 9.353 1 28 ? C2B NAD 400 A 1 HETATM 11 O O2B NAD . . . B 2 -25.328 12.293 10.362 1 30.9 ? O2B NAD 400 A 1 HETATM 12 C C1B NAD . . . B 2 -26.025 11.086 8.338 1 27.28 ? C1B NAD 400 A 1 HETATM 13 N N9A NAD . . . B 2 -27.051 10.096 8.714 1 25.72 ? N9A NAD 400 A 1 HETATM 14 C C8A NAD . . . B 2 -26.84 8.922 9.355 1 26.01 ? C8A NAD 400 A 1 HETATM 15 N N7A NAD . . . B 2 -28.005 8.255 9.475 1 25.45 ? N7A NAD 400 A 1 HETATM 16 C C5A NAD . . . B 2 -28.96 8.992 8.892 1 24.67 ? C5A NAD 400 A 1 HETATM 17 C C6A NAD . . . B 2 -30.406 8.827 8.7 1 26.95 ? C6A NAD 400 A 1 HETATM 18 N N6A NAD . . . B 2 -30.987 7.7 9.183 1 29.22 ? N6A NAD 400 A 1 HETATM 19 N N1A NAD . . . B 2 -31.076 9.809 8.044 1 26.97 ? N1A NAD 400 A 1 HETATM 20 C C2A NAD . . . B 2 -30.447 10.907 7.616 1 26.31 ? C2A NAD 400 A 1 HETATM 21 N N3A NAD . . . B 2 -29.117 11.143 7.771 1 25.79 ? N3A NAD 400 A 1 HETATM 22 C C4A NAD . . . B 2 -28.34 10.212 8.396 1 25.76 ? C4A NAD 400 A 1 HETATM 23 O O3 NAD . . . B 2 -20.528 8.528 5.805 1 23.92 ? O3 NAD 400 A 1 HETATM 24 P PN NAD . . . B 2 -20.078 8.577 4.26 1 24.89 ? PN NAD 400 A 1 HETATM 25 O O1N NAD . . . B 2 -18.61 8.192 4.204 1 24.29 ? O1N NAD 400 A 1 HETATM 26 O O2N NAD . . . B 2 -20.464 9.866 3.68 1 23.2 -1 O2N NAD 400 A 1 HETATM 27 O O5D NAD . . . B 2 -20.895 7.287 3.719 1 21.48 ? O5D NAD 400 A 1 HETATM 28 C C5D NAD . . . B 2 -22.292 7.311 3.362 1 22.19 ? C5D NAD 400 A 1 HETATM 29 C C4D NAD . . . B 2 -22.702 5.908 2.918 1 22.21 ? C4D NAD 400 A 1 HETATM 30 O O4D NAD . . . B 2 -22.177 5.634 1.599 1 20.56 ? O4D NAD 400 A 1 HETATM 31 C C3D NAD . . . B 2 -22.143 4.802 3.798 1 20.51 ? C3D NAD 400 A 1 HETATM 32 O O3D NAD . . . B 2 -23.265 4.023 4.216 1 21.4 ? O3D NAD 400 A 1 HETATM 33 C C2D NAD . . . B 2 -21.272 3.954 2.861 1 20.94 ? C2D NAD 400 A 1 HETATM 34 O O2D NAD . . . B 2 -21.288 2.556 3.178 1 22.24 ? O2D NAD 400 A 1 HETATM 35 C C1D NAD . . . B 2 -21.992 4.212 1.561 1 20.7 ? C1D NAD 400 A 1 HETATM 36 N N1N NAD . . . B 2 -21.205 3.905 0.373 1 21.66 ? N1N NAD 400 A 1 HETATM 37 C C2N NAD . . . B 2 -21.796 3.216 -0.606 1 21.44 ? C2N NAD 400 A 1 HETATM 38 C C3N NAD . . . B 2 -21.072 2.94 -1.766 1 22.27 ? C3N NAD 400 A 1 HETATM 39 C C7N NAD . . . B 2 -21.668 2.111 -2.886 1 24.13 ? C7N NAD 400 A 1 HETATM 40 O O7N NAD . . . B 2 -20.908 1.67 -3.742 1 24.52 ? O7N NAD 400 A 1 HETATM 41 N N7N NAD . . . B 2 -22.977 1.83 -2.929 1 23.27 ? N7N NAD 400 A 1 HETATM 42 C C4N NAD . . . B 2 -19.757 3.397 -1.888 1 20.49 ? C4N NAD 400 A 1 HETATM 43 C C5N NAD . . . B 2 -19.164 4.134 -0.867 1 21.8 ? C5N NAD 400 A 1 HETATM 44 C C6N NAD . . . B 2 -19.945 4.393 0.265 1 19.67 ? C6N NAD 400 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 44 #