data_4MPD # _model_server_result.job_id ftIp_HZpldshamSzcV5IZQ _model_server_result.datetime_utc '2025-07-15 08:38:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mpd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4MPD # _exptl.entry_id 4MPD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4MPD _cell.length_a 61.931 _cell.length_b 61.931 _cell.length_c 151.718 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MPD _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_465 y-1,x+1,-z 0 1 0 1 0 0 0 0 -1 -61.931 61.931 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAJ _chem_comp.mon_nstd_flag . _chem_comp.name 'NICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAJ doub 252 n n PA O2A NAJ sing 253 n n PA O5B NAJ sing 254 n n PA O3 NAJ sing 255 n n O5B C5B NAJ sing 256 n n C5B C4B NAJ sing 257 n n C5B H51A NAJ sing 258 n n C5B H52A NAJ sing 259 n n C4B O4B NAJ sing 260 n n C4B C3B NAJ sing 261 n n C4B H4B NAJ sing 262 n n O4B C1B NAJ sing 263 n n C3B O3B NAJ sing 264 n n C3B C2B NAJ sing 265 n n C3B H3B NAJ sing 266 n n O3B HO3A NAJ sing 267 n n C2B O2B NAJ sing 268 n n C2B C1B NAJ sing 269 n n C2B H2B NAJ sing 270 n n O2B HO2A NAJ sing 271 n n C1B N9A NAJ sing 272 n n C1B H1B NAJ sing 273 n n N9A C8A NAJ sing 274 n y N9A C4A NAJ sing 275 n y C8A N7A NAJ doub 276 n y C8A H8A NAJ sing 277 n n N7A C5A NAJ sing 278 n y C5A C6A NAJ sing 279 n y C5A C4A NAJ doub 280 n y C6A N6A NAJ sing 281 n n C6A N1A NAJ doub 282 n y N6A H61A NAJ sing 283 n n N6A H62A NAJ sing 284 n n N1A C2A NAJ sing 285 n y N1A H1A NAJ sing 286 n n C2A N3A NAJ doub 287 n y C2A H2A NAJ sing 288 n n N3A C4A NAJ sing 289 n y O3 PN NAJ sing 290 n n PN O1N NAJ doub 291 n n PN O2N NAJ sing 292 n n PN O5D NAJ sing 293 n n O5D C5D NAJ sing 294 n n C5D C4D NAJ sing 295 n n C5D H51N NAJ sing 296 n n C5D H52N NAJ sing 297 n n C4D O4D NAJ sing 298 n n C4D C3D NAJ sing 299 n n C4D H4D NAJ sing 300 n n O4D C1D NAJ sing 301 n n C3D O3D NAJ sing 302 n n C3D C2D NAJ sing 303 n n C3D H3D NAJ sing 304 n n O3D HO3N NAJ sing 305 n n C2D O2D NAJ sing 306 n n C2D C1D NAJ sing 307 n n C2D H2D NAJ sing 308 n n O2D HO2N NAJ sing 309 n n C1D N1N NAJ sing 310 n n C1D H1D NAJ sing 311 n n N1N C2N NAJ sing 312 n y N1N C6N NAJ doub 313 n y C2N C3N NAJ doub 314 n y C2N H2N NAJ sing 315 n n C3N C7N NAJ sing 316 n n C3N C4N NAJ sing 317 n y C7N O7N NAJ doub 318 n n C7N N7N NAJ sing 319 n n N7N H71N NAJ sing 320 n n N7N H72N NAJ sing 321 n n C4N C5N NAJ doub 322 n y C4N H4N NAJ sing 323 n n C5N C6N NAJ sing 324 n y C5N H5N NAJ sing 325 n n C6N H6N NAJ sing 326 n n # _atom_sites.entry_id 4MPD _atom_sites.fract_transf_matrix[1][1] 0.016147 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016147 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006591 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAJ A 1 401 1 NAJ NAJ . C 3 AKG A 1 402 1 AKG AKG . D 4 HOH A 1 501 1 HOH HOH . D 4 HOH A 2 502 2 HOH HOH . D 4 HOH A 3 503 3 HOH HOH . D 4 HOH A 4 504 4 HOH HOH . D 4 HOH A 5 505 5 HOH HOH . D 4 HOH A 6 506 6 HOH HOH . D 4 HOH A 7 507 7 HOH HOH . D 4 HOH A 8 508 8 HOH HOH . D 4 HOH A 9 509 9 HOH HOH . D 4 HOH A 10 510 10 HOH HOH . D 4 HOH A 11 511 11 HOH HOH . D 4 HOH A 12 512 12 HOH HOH . D 4 HOH A 13 513 13 HOH HOH . D 4 HOH A 14 514 14 HOH HOH . D 4 HOH A 15 515 15 HOH HOH . D 4 HOH A 16 516 16 HOH HOH . D 4 HOH A 17 517 17 HOH HOH . D 4 HOH A 18 518 18 HOH HOH . D 4 HOH A 19 519 20 HOH HOH . D 4 HOH A 20 520 21 HOH HOH . D 4 HOH A 21 521 22 HOH HOH . D 4 HOH A 22 522 23 HOH HOH . D 4 HOH A 23 523 24 HOH HOH . D 4 HOH A 24 524 25 HOH HOH . D 4 HOH A 25 525 26 HOH HOH . D 4 HOH A 26 526 27 HOH HOH . D 4 HOH A 27 527 28 HOH HOH . D 4 HOH A 28 528 30 HOH HOH . D 4 HOH A 29 529 31 HOH HOH . D 4 HOH A 30 530 32 HOH HOH . D 4 HOH A 31 531 33 HOH HOH . D 4 HOH A 32 532 34 HOH HOH . D 4 HOH A 33 533 35 HOH HOH . D 4 HOH A 34 534 36 HOH HOH . D 4 HOH A 35 535 37 HOH HOH . D 4 HOH A 36 536 38 HOH HOH . D 4 HOH A 37 537 39 HOH HOH . D 4 HOH A 38 538 41 HOH HOH . D 4 HOH A 39 539 42 HOH HOH . D 4 HOH A 40 540 43 HOH HOH . D 4 HOH A 41 541 44 HOH HOH . D 4 HOH A 42 542 46 HOH HOH . D 4 HOH A 43 543 47 HOH HOH . D 4 HOH A 44 544 48 HOH HOH . D 4 HOH A 45 545 49 HOH HOH . D 4 HOH A 46 546 51 HOH HOH . D 4 HOH A 47 547 52 HOH HOH . D 4 HOH A 48 548 53 HOH HOH . D 4 HOH A 49 549 54 HOH HOH . D 4 HOH A 50 550 58 HOH HOH . D 4 HOH A 51 551 59 HOH HOH . D 4 HOH A 52 552 60 HOH HOH . D 4 HOH A 53 553 61 HOH HOH . D 4 HOH A 54 554 62 HOH HOH . D 4 HOH A 55 555 63 HOH HOH . D 4 HOH A 56 556 64 HOH HOH . D 4 HOH A 57 557 66 HOH HOH . D 4 HOH A 58 558 67 HOH HOH . D 4 HOH A 59 559 68 HOH HOH . D 4 HOH A 60 560 70 HOH HOH . D 4 HOH A 61 561 71 HOH HOH . D 4 HOH A 62 562 72 HOH HOH . D 4 HOH A 63 563 73 HOH HOH . D 4 HOH A 64 564 74 HOH HOH . D 4 HOH A 65 565 75 HOH HOH . D 4 HOH A 66 566 77 HOH HOH . D 4 HOH A 67 567 78 HOH HOH . D 4 HOH A 68 568 79 HOH HOH . D 4 HOH A 69 569 80 HOH HOH . D 4 HOH A 70 570 82 HOH HOH . D 4 HOH A 71 571 83 HOH HOH . D 4 HOH A 72 572 84 HOH HOH . D 4 HOH A 73 573 85 HOH HOH . D 4 HOH A 74 574 86 HOH HOH . D 4 HOH A 75 575 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAJ . . . B 2 -11.564 20.044 6.312 0.8 30.44 ? PA NAJ 401 A 1 HETATM 2 O O1A NAJ . . . B 2 -11.636 20.46 7.753 0.8 31.83 ? O1A NAJ 401 A 1 HETATM 3 O O2A NAJ . . . B 2 -12.674 19.072 6.019 0.8 28.21 ? O2A NAJ 401 A 1 HETATM 4 O O5B NAJ . . . B 2 -10.155 19.364 6.016 0.8 47.56 ? O5B NAJ 401 A 1 HETATM 5 C C5B NAJ . . . B 2 -9 19.888 6.602 0.8 47.19 ? C5B NAJ 401 A 1 HETATM 6 C C4B NAJ . . . B 2 -8.012 18.786 6.861 0.8 47.19 ? C4B NAJ 401 A 1 HETATM 7 O O4B NAJ . . . B 2 -6.717 19.233 6.648 0.8 47.53 ? O4B NAJ 401 A 1 HETATM 8 C C3B NAJ . . . B 2 -8.048 18.265 8.259 0.8 47.36 ? C3B NAJ 401 A 1 HETATM 9 O O3B NAJ . . . B 2 -8.436 16.966 8.219 0.8 47.09 ? O3B NAJ 401 A 1 HETATM 10 C C2B NAJ . . . B 2 -6.672 18.397 8.75 0.8 47.6 ? C2B NAJ 401 A 1 HETATM 11 O O2B NAJ . . . B 2 -6.264 17.276 9.449 0.8 47.51 ? O2B NAJ 401 A 1 HETATM 12 C C1B NAJ . . . B 2 -5.866 18.538 7.499 0.8 47.42 ? C1B NAJ 401 A 1 HETATM 13 N N9A NAJ . . . B 2 -4.537 19.147 7.657 0.8 47.28 ? N9A NAJ 401 A 1 HETATM 14 C C8A NAJ . . . B 2 -3.397 18.664 7.079 0.8 47.08 ? C8A NAJ 401 A 1 HETATM 15 N N7A NAJ . . . B 2 -2.36 19.426 7.398 0.8 47.05 ? N7A NAJ 401 A 1 HETATM 16 C C5A NAJ . . . B 2 -2.78 20.432 8.193 0.8 47.14 ? C5A NAJ 401 A 1 HETATM 17 C C6A NAJ . . . B 2 -2.14 21.52 8.823 0.8 47.36 ? C6A NAJ 401 A 1 HETATM 18 N N6A NAJ . . . B 2 -0.734 21.726 8.678 0.8 47.3 ? N6A NAJ 401 A 1 HETATM 19 N N1A NAJ . . . B 2 -2.883 22.356 9.57 0.8 47.36 ? N1A NAJ 401 A 1 HETATM 20 C C2A NAJ . . . B 2 -4.192 22.172 9.711 0.8 47.04 ? C2A NAJ 401 A 1 HETATM 21 N N3A NAJ . . . B 2 -4.843 21.154 9.129 0.8 46.9 ? N3A NAJ 401 A 1 HETATM 22 C C4A NAJ . . . B 2 -4.189 20.271 8.372 0.8 47.22 ? C4A NAJ 401 A 1 HETATM 23 O O3 NAJ . . . B 2 -11.723 21.315 5.401 0.8 30.13 ? O3 NAJ 401 A 1 HETATM 24 P PN NAJ . . . B 2 -11.775 21.192 3.832 0.8 27.21 ? PN NAJ 401 A 1 HETATM 25 O O1N NAJ . . . B 2 -13.221 21.014 3.377 0.8 28.72 ? O1N NAJ 401 A 1 HETATM 26 O O2N NAJ . . . B 2 -10.953 20.006 3.375 0.8 29.57 ? O2N NAJ 401 A 1 HETATM 27 O O5D NAJ . . . B 2 -11.18 22.522 3.207 0.8 28.9 ? O5D NAJ 401 A 1 HETATM 28 C C5D NAJ . . . B 2 -9.805 22.777 3.311 0.8 28.75 ? C5D NAJ 401 A 1 HETATM 29 C C4D NAJ . . . B 2 -9.471 24.149 2.685 0.8 29.21 ? C4D NAJ 401 A 1 HETATM 30 O O4D NAJ . . . B 2 -9.999 24.302 1.39 0.8 29.14 ? O4D NAJ 401 A 1 HETATM 31 C C3D NAJ . . . B 2 -9.918 25.331 3.515 0.8 29 ? C3D NAJ 401 A 1 HETATM 32 O O3D NAJ . . . B 2 -8.852 25.933 4.197 0.8 28.02 ? O3D NAJ 401 A 1 HETATM 33 C C2D NAJ . . . B 2 -10.576 26.219 2.511 0.8 28.97 ? C2D NAJ 401 A 1 HETATM 34 O O2D NAJ . . . B 2 -10.228 27.522 2.717 0.8 29.52 ? O2D NAJ 401 A 1 HETATM 35 C C1D NAJ . . . B 2 -10.061 25.684 1.211 0.8 28.08 ? C1D NAJ 401 A 1 HETATM 36 N N1N NAJ . . . B 2 -10.872 26.077 0.062 0.8 27.53 ? N1N NAJ 401 A 1 HETATM 37 C C2N NAJ . . . B 2 -10.313 26.83 -0.887 0.8 26.02 ? C2N NAJ 401 A 1 HETATM 38 C C3N NAJ . . . B 2 -11.052 27.232 -2.02 0.8 26.13 ? C3N NAJ 401 A 1 HETATM 39 C C7N NAJ . . . B 2 -10.4 28.079 -3.066 0.8 25.68 ? C7N NAJ 401 A 1 HETATM 40 O O7N NAJ . . . B 2 -11.068 28.491 -3.999 0.8 25.34 ? O7N NAJ 401 A 1 HETATM 41 N N7N NAJ . . . B 2 -9.005 28.418 -3.003 0.8 25.19 ? N7N NAJ 401 A 1 HETATM 42 C C4N NAJ . . . B 2 -12.404 26.814 -2.13 0.8 26.77 ? C4N NAJ 401 A 1 HETATM 43 C C5N NAJ . . . B 2 -12.945 26.023 -1.117 0.8 27.29 ? C5N NAJ 401 A 1 HETATM 44 C C6N NAJ . . . B 2 -12.149 25.667 -0.022 0.8 27.5 ? C6N NAJ 401 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #