data_4MPI
#
_model_server_result.job_id            R4NuGvDUOuAtTtgJ1tU8yQ 
_model_server_result.datetime_utc      '2024-12-21 11:55:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4mpi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":101}' 
#
_entry.id    4MPI 
#
_exptl.entry_id    4MPI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              88.105 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4-DIETHYLENE DIOXIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4MPI 
_cell.length_a            38.515 
_cell.length_b            38.515 
_cell.length_c            100.934 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4MPI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 5 A CYS 3 1_555 A SG CYS 20 A CYS 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 14 A CYS 12 1_555 A SG CYS 26 A CYS 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 A SG CYS 19 A CYS 17 1_555 A SG CYS 33 A CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf4 A SG CYS 37 A CYS 35 1_555 A SG CYS 41 A CYS 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf5 B SG CYS 5 B CYS 3 1_555 B SG CYS 20 B CYS 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf6 B SG CYS 14 B CYS 12 1_555 B SG CYS 26 B CYS 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf7 B SG CYS 19 B CYS 17 1_555 B SG CYS 33 B CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf8 B SG CYS 37 B CYS 35 1_555 B SG CYS 41 B CYS 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
#
_chem_comp.formula           'C4 H8 O2' 
_chem_comp.formula_weight    88.105 
_chem_comp.id                DIO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,4-DIETHYLENE DIOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C1' DIO sing 83 n n 
C1 O1 DIO sing 84 n n 
C1 H11 DIO sing 85 n n 
C1 H12 DIO sing 86 n n 
C2 C2' DIO sing 87 n n 
C2 O1 DIO sing 88 n n 
C2 H21 DIO sing 89 n n 
C2 H22 DIO sing 90 n n 
C1' O1' DIO sing 91 n n 
C1' "H1'1" DIO sing 92 n n 
C1' "H1'2" DIO sing 93 n n 
C2' O1' DIO sing 94 n n 
C2' "H2'1" DIO sing 95 n n 
C2' "H2'2" DIO sing 96 n n 
#
_atom_sites.entry_id                     4MPI 
_atom_sites.fract_transf_matrix[1][1]    0.025964 
_atom_sites.fract_transf_matrix[1][2]    0.01499 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.029981 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009907 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MES A 1 101 250 MES MES . 
D 3 DIO B 1 101 1159 DIO DIO . 
E 4 HOH A 1 201 1 HOH HOH . 
E 4 HOH A 2 202 3 HOH HOH . 
E 4 HOH A 3 203 4 HOH HOH . 
E 4 HOH A 4 204 5 HOH HOH . 
E 4 HOH A 5 205 8 HOH HOH . 
E 4 HOH A 6 206 9 HOH HOH . 
E 4 HOH A 7 207 13 HOH HOH . 
E 4 HOH A 8 208 14 HOH HOH . 
E 4 HOH A 9 209 16 HOH HOH . 
E 4 HOH A 10 210 18 HOH HOH . 
E 4 HOH A 11 211 22 HOH HOH . 
E 4 HOH A 12 212 23 HOH HOH . 
E 4 HOH A 13 213 24 HOH HOH . 
E 4 HOH A 14 214 27 HOH HOH . 
E 4 HOH A 15 215 29 HOH HOH . 
E 4 HOH A 16 216 30 HOH HOH . 
E 4 HOH A 17 217 31 HOH HOH . 
E 4 HOH A 18 218 32 HOH HOH . 
E 4 HOH A 19 219 38 HOH HOH . 
E 4 HOH A 20 220 39 HOH HOH . 
E 4 HOH A 21 221 40 HOH HOH . 
E 4 HOH A 22 222 42 HOH HOH . 
E 4 HOH A 23 223 43 HOH HOH . 
E 4 HOH A 24 224 44 HOH HOH . 
E 4 HOH A 25 225 46 HOH HOH . 
E 4 HOH A 26 226 50 HOH HOH . 
E 4 HOH A 27 227 51 HOH HOH . 
E 4 HOH A 28 228 52 HOH HOH . 
E 4 HOH A 29 229 53 HOH HOH . 
E 4 HOH A 30 230 54 HOH HOH . 
E 4 HOH A 31 231 55 HOH HOH . 
E 4 HOH A 32 232 56 HOH HOH . 
E 4 HOH A 33 233 58 HOH HOH . 
E 4 HOH A 34 234 60 HOH HOH . 
E 4 HOH A 35 235 62 HOH HOH . 
E 4 HOH A 36 236 63 HOH HOH . 
E 4 HOH A 37 237 64 HOH HOH . 
E 4 HOH A 38 238 68 HOH HOH . 
E 4 HOH A 39 239 71 HOH HOH . 
E 4 HOH A 40 240 77 HOH HOH . 
E 4 HOH A 41 241 78 HOH HOH . 
E 4 HOH A 42 242 81 HOH HOH . 
E 4 HOH A 43 243 83 HOH HOH . 
E 4 HOH A 44 244 84 HOH HOH . 
E 4 HOH A 45 245 85 HOH HOH . 
F 4 HOH B 1 201 2 HOH HOH . 
F 4 HOH B 2 202 6 HOH HOH . 
F 4 HOH B 3 203 7 HOH HOH . 
F 4 HOH B 4 204 10 HOH HOH . 
F 4 HOH B 5 205 11 HOH HOH . 
F 4 HOH B 6 206 12 HOH HOH . 
F 4 HOH B 7 207 15 HOH HOH . 
F 4 HOH B 8 208 17 HOH HOH . 
F 4 HOH B 9 209 19 HOH HOH . 
F 4 HOH B 10 210 20 HOH HOH . 
F 4 HOH B 11 211 21 HOH HOH . 
F 4 HOH B 12 212 25 HOH HOH . 
F 4 HOH B 13 213 26 HOH HOH . 
F 4 HOH B 14 214 28 HOH HOH . 
F 4 HOH B 15 215 33 HOH HOH . 
F 4 HOH B 16 216 34 HOH HOH . 
F 4 HOH B 17 217 35 HOH HOH . 
F 4 HOH B 18 218 36 HOH HOH . 
F 4 HOH B 19 219 37 HOH HOH . 
F 4 HOH B 20 220 41 HOH HOH . 
F 4 HOH B 21 221 45 HOH HOH . 
F 4 HOH B 22 222 47 HOH HOH . 
F 4 HOH B 23 223 48 HOH HOH . 
F 4 HOH B 24 224 49 HOH HOH . 
F 4 HOH B 25 225 57 HOH HOH . 
F 4 HOH B 26 226 59 HOH HOH . 
F 4 HOH B 27 227 61 HOH HOH . 
F 4 HOH B 28 228 65 HOH HOH . 
F 4 HOH B 29 229 66 HOH HOH . 
F 4 HOH B 30 230 67 HOH HOH . 
F 4 HOH B 31 231 69 HOH HOH . 
F 4 HOH B 32 232 70 HOH HOH . 
F 4 HOH B 33 233 72 HOH HOH . 
F 4 HOH B 34 234 73 HOH HOH . 
F 4 HOH B 35 235 74 HOH HOH . 
F 4 HOH B 36 236 75 HOH HOH . 
F 4 HOH B 37 237 76 HOH HOH . 
F 4 HOH B 38 238 79 HOH HOH . 
F 4 HOH B 39 239 80 HOH HOH . 
F 4 HOH B 40 240 82 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DIO . . . D 3 -14.505 78.908 2.176 1 39.4 ? C1 DIO 101 B 1 
HETATM 2 C C2 DIO . . . D 3 -14.768 78.248 4.347 1 32.63 ? C2 DIO 101 B 1 
HETATM 3 C C1' DIO . . . D 3 -15.789 78.143 1.935 1 41.19 ? C1' DIO 101 B 1 
HETATM 4 C C2' DIO . . . D 3 -16.204 77.825 4.143 1 34.27 ? C2' DIO 101 B 1 
HETATM 5 O O1 DIO . . . D 3 -14.455 79.34 3.516 1 41.67 ? O1 DIO 101 B 1 
HETATM 6 O O1' DIO . . . D 3 -16.708 78.416 2.969 1 46.1 ? O1' DIO 101 B 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           6 
#