data_4MPK
#
_model_server_result.job_id            '_N_40DKQn79ym8uycfh1Rg' 
_model_server_result.datetime_utc      '2024-11-08 09:13:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4mpk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    4MPK 
#
_exptl.entry_id    4MPK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4MPK 
_cell.length_a            60.938 
_cell.length_b            67.11 
_cell.length_c            107.006 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4MPK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 5 A CYS 5 1_555 A SG CYS 30 A CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
disulf ? disulf2 A SG CYS 278 A CYS 279 1_555 A SG CYS 342 A CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
covale ? covale1 A ND2 ASN 39 A ASN 39 1_555 B C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 250 n n 
C1 O1 NAG sing 251 n n 
C1 O5 NAG sing 252 n n 
C1 H1 NAG sing 253 n n 
C2 C3 NAG sing 254 n n 
C2 N2 NAG sing 255 n n 
C2 H2 NAG sing 256 n n 
C3 C4 NAG sing 257 n n 
C3 O3 NAG sing 258 n n 
C3 H3 NAG sing 259 n n 
C4 C5 NAG sing 260 n n 
C4 O4 NAG sing 261 n n 
C4 H4 NAG sing 262 n n 
C5 C6 NAG sing 263 n n 
C5 O5 NAG sing 264 n n 
C5 H5 NAG sing 265 n n 
C6 O6 NAG sing 266 n n 
C6 H61 NAG sing 267 n n 
C6 H62 NAG sing 268 n n 
C7 C8 NAG sing 269 n n 
C7 N2 NAG sing 270 n n 
C7 O7 NAG doub 271 n n 
C8 H81 NAG sing 272 n n 
C8 H82 NAG sing 273 n n 
C8 H83 NAG sing 274 n n 
N2 HN2 NAG sing 275 n n 
O1 HO1 NAG sing 276 n n 
O3 HO3 NAG sing 277 n n 
O4 HO4 NAG sing 278 n n 
O6 HO6 NAG sing 279 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4MPK 
_atom_sites.fract_transf_matrix[1][1]    0.01641 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014901 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009345 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 401 363 NAG NAG . 
C 2 NAG A 1 402 1 NAG NAG . 
D 3 GOL A 1 403 403 GOL GOL . 
E 4 HOH A 1 501 1 HOH HOH . 
E 4 HOH A 2 502 2 HOH HOH . 
E 4 HOH A 3 503 3 HOH HOH . 
E 4 HOH A 4 504 4 HOH HOH . 
E 4 HOH A 5 505 5 HOH HOH . 
E 4 HOH A 6 506 6 HOH HOH . 
E 4 HOH A 7 507 7 HOH HOH . 
E 4 HOH A 8 508 8 HOH HOH . 
E 4 HOH A 9 509 9 HOH HOH . 
E 4 HOH A 10 510 10 HOH HOH . 
E 4 HOH A 11 511 11 HOH HOH . 
E 4 HOH A 12 512 12 HOH HOH . 
E 4 HOH A 13 513 13 HOH HOH . 
E 4 HOH A 14 514 14 HOH HOH . 
E 4 HOH A 15 515 15 HOH HOH . 
E 4 HOH A 16 516 16 HOH HOH . 
E 4 HOH A 17 517 17 HOH HOH . 
E 4 HOH A 18 518 18 HOH HOH . 
E 4 HOH A 19 519 19 HOH HOH . 
E 4 HOH A 20 520 20 HOH HOH . 
E 4 HOH A 21 521 21 HOH HOH . 
E 4 HOH A 22 522 22 HOH HOH . 
E 4 HOH A 23 523 23 HOH HOH . 
E 4 HOH A 24 524 24 HOH HOH . 
E 4 HOH A 25 525 25 HOH HOH . 
E 4 HOH A 26 526 26 HOH HOH . 
E 4 HOH A 27 527 27 HOH HOH . 
E 4 HOH A 28 528 28 HOH HOH . 
E 4 HOH A 29 529 29 HOH HOH . 
E 4 HOH A 30 530 30 HOH HOH . 
E 4 HOH A 31 531 31 HOH HOH . 
E 4 HOH A 32 532 32 HOH HOH . 
E 4 HOH A 33 533 34 HOH HOH . 
E 4 HOH A 34 534 35 HOH HOH . 
E 4 HOH A 35 535 36 HOH HOH . 
E 4 HOH A 36 536 37 HOH HOH . 
E 4 HOH A 37 537 38 HOH HOH . 
E 4 HOH A 38 538 39 HOH HOH . 
E 4 HOH A 39 539 40 HOH HOH . 
E 4 HOH A 40 540 41 HOH HOH . 
E 4 HOH A 41 541 42 HOH HOH . 
E 4 HOH A 42 542 43 HOH HOH . 
E 4 HOH A 43 543 46 HOH HOH . 
E 4 HOH A 44 544 48 HOH HOH . 
E 4 HOH A 45 545 49 HOH HOH . 
E 4 HOH A 46 546 50 HOH HOH . 
E 4 HOH A 47 547 51 HOH HOH . 
E 4 HOH A 48 548 53 HOH HOH . 
E 4 HOH A 49 549 54 HOH HOH . 
E 4 HOH A 50 550 55 HOH HOH . 
E 4 HOH A 51 551 56 HOH HOH . 
E 4 HOH A 52 552 57 HOH HOH . 
E 4 HOH A 53 553 58 HOH HOH . 
E 4 HOH A 54 554 59 HOH HOH . 
E 4 HOH A 55 555 61 HOH HOH . 
E 4 HOH A 56 556 63 HOH HOH . 
E 4 HOH A 57 557 64 HOH HOH . 
E 4 HOH A 58 558 65 HOH HOH . 
E 4 HOH A 59 559 66 HOH HOH . 
E 4 HOH A 60 560 67 HOH HOH . 
E 4 HOH A 61 561 69 HOH HOH . 
E 4 HOH A 62 562 73 HOH HOH . 
E 4 HOH A 63 563 74 HOH HOH . 
E 4 HOH A 64 564 75 HOH HOH . 
E 4 HOH A 65 565 76 HOH HOH . 
E 4 HOH A 66 566 78 HOH HOH . 
E 4 HOH A 67 567 79 HOH HOH . 
E 4 HOH A 68 568 80 HOH HOH . 
E 4 HOH A 69 569 84 HOH HOH . 
E 4 HOH A 70 570 89 HOH HOH . 
E 4 HOH A 71 571 90 HOH HOH . 
E 4 HOH A 72 572 91 HOH HOH . 
E 4 HOH A 73 573 93 HOH HOH . 
E 4 HOH A 74 574 95 HOH HOH . 
E 4 HOH A 75 575 99 HOH HOH . 
E 4 HOH A 76 576 101 HOH HOH . 
E 4 HOH A 77 577 103 HOH HOH . 
E 4 HOH A 78 578 104 HOH HOH . 
E 4 HOH A 79 579 105 HOH HOH . 
E 4 HOH A 80 580 106 HOH HOH . 
E 4 HOH A 81 581 109 HOH HOH . 
E 4 HOH A 82 582 110 HOH HOH . 
E 4 HOH A 83 583 112 HOH HOH . 
E 4 HOH A 84 584 113 HOH HOH . 
E 4 HOH A 85 585 114 HOH HOH . 
E 4 HOH A 86 586 115 HOH HOH . 
E 4 HOH A 87 587 116 HOH HOH . 
E 4 HOH A 88 588 117 HOH HOH . 
E 4 HOH A 89 589 118 HOH HOH . 
E 4 HOH A 90 590 119 HOH HOH . 
E 4 HOH A 91 591 120 HOH HOH . 
E 4 HOH A 92 592 122 HOH HOH . 
E 4 HOH A 93 593 123 HOH HOH . 
E 4 HOH A 94 594 124 HOH HOH . 
E 4 HOH A 95 595 125 HOH HOH . 
E 4 HOH A 96 596 126 HOH HOH . 
E 4 HOH A 97 597 127 HOH HOH . 
E 4 HOH A 98 598 128 HOH HOH . 
E 4 HOH A 99 599 129 HOH HOH . 
E 4 HOH A 100 600 132 HOH HOH . 
E 4 HOH A 101 601 133 HOH HOH . 
E 4 HOH A 102 602 134 HOH HOH . 
E 4 HOH A 103 603 135 HOH HOH . 
E 4 HOH A 104 604 136 HOH HOH . 
E 4 HOH A 105 605 137 HOH HOH . 
E 4 HOH A 106 606 138 HOH HOH . 
E 4 HOH A 107 607 139 HOH HOH . 
E 4 HOH A 108 608 140 HOH HOH . 
E 4 HOH A 109 609 141 HOH HOH . 
E 4 HOH A 110 610 142 HOH HOH . 
E 4 HOH A 111 611 143 HOH HOH . 
E 4 HOH A 112 612 144 HOH HOH . 
E 4 HOH A 113 613 145 HOH HOH . 
E 4 HOH A 114 614 146 HOH HOH . 
E 4 HOH A 115 615 147 HOH HOH . 
E 4 HOH A 116 616 148 HOH HOH . 
E 4 HOH A 117 617 149 HOH HOH . 
E 4 HOH A 118 618 150 HOH HOH . 
E 4 HOH A 119 619 151 HOH HOH . 
E 4 HOH A 120 620 152 HOH HOH . 
E 4 HOH A 121 621 153 HOH HOH . 
E 4 HOH A 122 622 154 HOH HOH . 
E 4 HOH A 123 623 155 HOH HOH . 
E 4 HOH A 124 624 156 HOH HOH . 
E 4 HOH A 125 625 157 HOH HOH . 
E 4 HOH A 126 626 158 HOH HOH . 
E 4 HOH A 127 627 159 HOH HOH . 
E 4 HOH A 128 628 160 HOH HOH . 
E 4 HOH A 129 629 161 HOH HOH . 
E 4 HOH A 130 630 162 HOH HOH . 
E 4 HOH A 131 631 163 HOH HOH . 
E 4 HOH A 132 632 164 HOH HOH . 
E 4 HOH A 133 633 165 HOH HOH . 
E 4 HOH A 134 634 166 HOH HOH . 
E 4 HOH A 135 635 167 HOH HOH . 
E 4 HOH A 136 636 168 HOH HOH . 
E 4 HOH A 137 637 169 HOH HOH . 
E 4 HOH A 138 638 170 HOH HOH . 
E 4 HOH A 139 639 171 HOH HOH . 
E 4 HOH A 140 640 172 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . B 2 17.778 17.886 -7.5 1 30.46 ? C1 NAG 401 A 1 
HETATM 2 C C2 NAG . . . B 2 17.192 18.489 -8.77 1 34.44 ? C2 NAG 401 A 1 
HETATM 3 C C3 NAG . . . B 2 17.983 19.734 -9.254 1 35.96 ? C3 NAG 401 A 1 
HETATM 4 C C4 NAG . . . B 2 18.266 20.678 -8.071 1 35.68 ? C4 NAG 401 A 1 
HETATM 5 C C5 NAG . . . B 2 18.988 19.817 -7.034 1 33.2 ? C5 NAG 401 A 1 
HETATM 6 C C6 NAG . . . B 2 19.551 20.592 -5.858 1 33.05 ? C6 NAG 401 A 1 
HETATM 7 C C7 NAG . . . B 2 15.929 17.048 -10.311 1 39.24 ? C7 NAG 401 A 1 
HETATM 8 C C8 NAG . . . B 2 15.934 16.032 -11.409 1 40.91 ? C8 NAG 401 A 1 
HETATM 9 N N2 NAG . . . B 2 17.098 17.471 -9.819 1 36.23 ? N2 NAG 401 A 1 
HETATM 10 O O3 NAG . . . B 2 17.269 20.431 -10.28 1 37.39 ? O3 NAG 401 A 1 
HETATM 11 O O4 NAG . . . B 2 18.92 21.907 -8.428 1 36.61 ? O4 NAG 401 A 1 
HETATM 12 O O5 NAG . . . B 2 18.026 18.909 -6.558 1 29.99 ? O5 NAG 401 A 1 
HETATM 13 O O6 NAG . . . B 2 18.495 21.343 -5.293 1 34.5 ? O6 NAG 401 A 1 
HETATM 14 O O7 NAG . . . B 2 14.838 17.443 -9.916 1 44.36 ? O7 NAG 401 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#