data_4MPK # _model_server_result.job_id NMeH7Qy11FjXGDGSdLZMKg _model_server_result.datetime_utc '2024-11-08 09:12:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mpk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 4MPK # _exptl.entry_id 4MPK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4MPK _cell.length_a 60.938 _cell.length_b 67.11 _cell.length_c 107.006 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MPK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 5 1_555 A SG CYS 30 A CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? disulf ? disulf2 A SG CYS 278 A CYS 279 1_555 A SG CYS 342 A CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? covale ? covale1 A ND2 ASN 39 A ASN 39 1_555 B C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 250 n n C1 O1 NAG sing 251 n n C1 O5 NAG sing 252 n n C1 H1 NAG sing 253 n n C2 C3 NAG sing 254 n n C2 N2 NAG sing 255 n n C2 H2 NAG sing 256 n n C3 C4 NAG sing 257 n n C3 O3 NAG sing 258 n n C3 H3 NAG sing 259 n n C4 C5 NAG sing 260 n n C4 O4 NAG sing 261 n n C4 H4 NAG sing 262 n n C5 C6 NAG sing 263 n n C5 O5 NAG sing 264 n n C5 H5 NAG sing 265 n n C6 O6 NAG sing 266 n n C6 H61 NAG sing 267 n n C6 H62 NAG sing 268 n n C7 C8 NAG sing 269 n n C7 N2 NAG sing 270 n n C7 O7 NAG doub 271 n n C8 H81 NAG sing 272 n n C8 H82 NAG sing 273 n n C8 H83 NAG sing 274 n n N2 HN2 NAG sing 275 n n O1 HO1 NAG sing 276 n n O3 HO3 NAG sing 277 n n O4 HO4 NAG sing 278 n n O6 HO6 NAG sing 279 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4MPK _atom_sites.fract_transf_matrix[1][1] 0.01641 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014901 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009345 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 401 363 NAG NAG . C 2 NAG A 1 402 1 NAG NAG . D 3 GOL A 1 403 403 GOL GOL . E 4 HOH A 1 501 1 HOH HOH . E 4 HOH A 2 502 2 HOH HOH . E 4 HOH A 3 503 3 HOH HOH . E 4 HOH A 4 504 4 HOH HOH . E 4 HOH A 5 505 5 HOH HOH . E 4 HOH A 6 506 6 HOH HOH . E 4 HOH A 7 507 7 HOH HOH . E 4 HOH A 8 508 8 HOH HOH . E 4 HOH A 9 509 9 HOH HOH . E 4 HOH A 10 510 10 HOH HOH . E 4 HOH A 11 511 11 HOH HOH . E 4 HOH A 12 512 12 HOH HOH . E 4 HOH A 13 513 13 HOH HOH . E 4 HOH A 14 514 14 HOH HOH . E 4 HOH A 15 515 15 HOH HOH . E 4 HOH A 16 516 16 HOH HOH . E 4 HOH A 17 517 17 HOH HOH . E 4 HOH A 18 518 18 HOH HOH . E 4 HOH A 19 519 19 HOH HOH . E 4 HOH A 20 520 20 HOH HOH . E 4 HOH A 21 521 21 HOH HOH . E 4 HOH A 22 522 22 HOH HOH . E 4 HOH A 23 523 23 HOH HOH . E 4 HOH A 24 524 24 HOH HOH . E 4 HOH A 25 525 25 HOH HOH . E 4 HOH A 26 526 26 HOH HOH . E 4 HOH A 27 527 27 HOH HOH . E 4 HOH A 28 528 28 HOH HOH . E 4 HOH A 29 529 29 HOH HOH . E 4 HOH A 30 530 30 HOH HOH . E 4 HOH A 31 531 31 HOH HOH . E 4 HOH A 32 532 32 HOH HOH . E 4 HOH A 33 533 34 HOH HOH . E 4 HOH A 34 534 35 HOH HOH . E 4 HOH A 35 535 36 HOH HOH . E 4 HOH A 36 536 37 HOH HOH . E 4 HOH A 37 537 38 HOH HOH . E 4 HOH A 38 538 39 HOH HOH . E 4 HOH A 39 539 40 HOH HOH . E 4 HOH A 40 540 41 HOH HOH . E 4 HOH A 41 541 42 HOH HOH . E 4 HOH A 42 542 43 HOH HOH . E 4 HOH A 43 543 46 HOH HOH . E 4 HOH A 44 544 48 HOH HOH . E 4 HOH A 45 545 49 HOH HOH . E 4 HOH A 46 546 50 HOH HOH . E 4 HOH A 47 547 51 HOH HOH . E 4 HOH A 48 548 53 HOH HOH . E 4 HOH A 49 549 54 HOH HOH . E 4 HOH A 50 550 55 HOH HOH . E 4 HOH A 51 551 56 HOH HOH . E 4 HOH A 52 552 57 HOH HOH . E 4 HOH A 53 553 58 HOH HOH . E 4 HOH A 54 554 59 HOH HOH . E 4 HOH A 55 555 61 HOH HOH . E 4 HOH A 56 556 63 HOH HOH . E 4 HOH A 57 557 64 HOH HOH . E 4 HOH A 58 558 65 HOH HOH . E 4 HOH A 59 559 66 HOH HOH . E 4 HOH A 60 560 67 HOH HOH . E 4 HOH A 61 561 69 HOH HOH . E 4 HOH A 62 562 73 HOH HOH . E 4 HOH A 63 563 74 HOH HOH . E 4 HOH A 64 564 75 HOH HOH . E 4 HOH A 65 565 76 HOH HOH . E 4 HOH A 66 566 78 HOH HOH . E 4 HOH A 67 567 79 HOH HOH . E 4 HOH A 68 568 80 HOH HOH . E 4 HOH A 69 569 84 HOH HOH . E 4 HOH A 70 570 89 HOH HOH . E 4 HOH A 71 571 90 HOH HOH . E 4 HOH A 72 572 91 HOH HOH . E 4 HOH A 73 573 93 HOH HOH . E 4 HOH A 74 574 95 HOH HOH . E 4 HOH A 75 575 99 HOH HOH . E 4 HOH A 76 576 101 HOH HOH . E 4 HOH A 77 577 103 HOH HOH . E 4 HOH A 78 578 104 HOH HOH . E 4 HOH A 79 579 105 HOH HOH . E 4 HOH A 80 580 106 HOH HOH . E 4 HOH A 81 581 109 HOH HOH . E 4 HOH A 82 582 110 HOH HOH . E 4 HOH A 83 583 112 HOH HOH . E 4 HOH A 84 584 113 HOH HOH . E 4 HOH A 85 585 114 HOH HOH . E 4 HOH A 86 586 115 HOH HOH . E 4 HOH A 87 587 116 HOH HOH . E 4 HOH A 88 588 117 HOH HOH . E 4 HOH A 89 589 118 HOH HOH . E 4 HOH A 90 590 119 HOH HOH . E 4 HOH A 91 591 120 HOH HOH . E 4 HOH A 92 592 122 HOH HOH . E 4 HOH A 93 593 123 HOH HOH . E 4 HOH A 94 594 124 HOH HOH . E 4 HOH A 95 595 125 HOH HOH . E 4 HOH A 96 596 126 HOH HOH . E 4 HOH A 97 597 127 HOH HOH . E 4 HOH A 98 598 128 HOH HOH . E 4 HOH A 99 599 129 HOH HOH . E 4 HOH A 100 600 132 HOH HOH . E 4 HOH A 101 601 133 HOH HOH . E 4 HOH A 102 602 134 HOH HOH . E 4 HOH A 103 603 135 HOH HOH . E 4 HOH A 104 604 136 HOH HOH . E 4 HOH A 105 605 137 HOH HOH . E 4 HOH A 106 606 138 HOH HOH . E 4 HOH A 107 607 139 HOH HOH . E 4 HOH A 108 608 140 HOH HOH . E 4 HOH A 109 609 141 HOH HOH . E 4 HOH A 110 610 142 HOH HOH . E 4 HOH A 111 611 143 HOH HOH . E 4 HOH A 112 612 144 HOH HOH . E 4 HOH A 113 613 145 HOH HOH . E 4 HOH A 114 614 146 HOH HOH . E 4 HOH A 115 615 147 HOH HOH . E 4 HOH A 116 616 148 HOH HOH . E 4 HOH A 117 617 149 HOH HOH . E 4 HOH A 118 618 150 HOH HOH . E 4 HOH A 119 619 151 HOH HOH . E 4 HOH A 120 620 152 HOH HOH . E 4 HOH A 121 621 153 HOH HOH . E 4 HOH A 122 622 154 HOH HOH . E 4 HOH A 123 623 155 HOH HOH . E 4 HOH A 124 624 156 HOH HOH . E 4 HOH A 125 625 157 HOH HOH . E 4 HOH A 126 626 158 HOH HOH . E 4 HOH A 127 627 159 HOH HOH . E 4 HOH A 128 628 160 HOH HOH . E 4 HOH A 129 629 161 HOH HOH . E 4 HOH A 130 630 162 HOH HOH . E 4 HOH A 131 631 163 HOH HOH . E 4 HOH A 132 632 164 HOH HOH . E 4 HOH A 133 633 165 HOH HOH . E 4 HOH A 134 634 166 HOH HOH . E 4 HOH A 135 635 167 HOH HOH . E 4 HOH A 136 636 168 HOH HOH . E 4 HOH A 137 637 169 HOH HOH . E 4 HOH A 138 638 170 HOH HOH . E 4 HOH A 139 639 171 HOH HOH . E 4 HOH A 140 640 172 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 2 19.001 1.571 -18.114 0.6 51.8 ? C1 NAG 402 A 1 HETATM 2 C C2 NAG . . . C 2 19.204 3.011 -17.658 0.6 54.83 ? C2 NAG 402 A 1 HETATM 3 C C3 NAG . . . C 2 20.398 3.123 -16.717 0.6 59.22 ? C3 NAG 402 A 1 HETATM 4 C C4 NAG . . . C 2 20.322 2.075 -15.613 0.6 54.25 ? C4 NAG 402 A 1 HETATM 5 C C5 NAG . . . C 2 20.052 0.691 -16.191 0.6 59.09 ? C5 NAG 402 A 1 HETATM 6 C C6 NAG . . . C 2 19.901 -0.344 -15.082 0.6 55.33 ? C6 NAG 402 A 1 HETATM 7 C C7 NAG . . . C 2 18.458 4.729 -19.201 0.6 50.44 ? C7 NAG 402 A 1 HETATM 8 C C8 NAG . . . C 2 18.745 6.176 -18.932 0.6 52.81 ? C8 NAG 402 A 1 HETATM 9 N N2 NAG . . . C 2 19.398 3.872 -18.809 0.6 56.04 ? N2 NAG 402 A 1 HETATM 10 O O1 NAG . . . C 2 17.819 1.487 -18.919 0.6 53.28 ? O1 NAG 402 A 1 HETATM 11 O O3 NAG . . . C 2 20.424 4.43 -16.133 0.6 51.53 ? O3 NAG 402 A 1 HETATM 12 O O4 NAG . . . C 2 21.557 2.056 -14.889 0.6 59.28 ? O4 NAG 402 A 1 HETATM 13 O O5 NAG . . . C 2 18.86 0.727 -16.974 0.6 57.27 ? O5 NAG 402 A 1 HETATM 14 O O6 NAG . . . C 2 18.973 0.138 -14.104 0.6 54.86 ? O6 NAG 402 A 1 HETATM 15 O O7 NAG . . . C 2 17.43 4.36 -19.746 0.6 58.29 ? O7 NAG 402 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 15 #