data_4MPK
#
_model_server_result.job_id            j8xArG_3f6quqqkyT4vP_A 
_model_server_result.datetime_utc      '2024-12-01 03:17:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4mpk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    4MPK 
#
_exptl.entry_id    4MPK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4MPK 
_cell.length_a            60.938 
_cell.length_b            67.11 
_cell.length_c            107.006 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4MPK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 5 A CYS 5 1_555 A SG CYS 30 A CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
disulf ? disulf2 A SG CYS 278 A CYS 279 1_555 A SG CYS 342 A CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
covale ? covale1 A ND2 ASN 39 A ASN 39 1_555 B C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4MPK 
_atom_sites.fract_transf_matrix[1][1]    0.01641 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014901 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009345 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 401 363 NAG NAG . 
C 2 NAG A 1 402 1 NAG NAG . 
D 3 GOL A 1 403 403 GOL GOL . 
E 4 HOH A 1 501 1 HOH HOH . 
E 4 HOH A 2 502 2 HOH HOH . 
E 4 HOH A 3 503 3 HOH HOH . 
E 4 HOH A 4 504 4 HOH HOH . 
E 4 HOH A 5 505 5 HOH HOH . 
E 4 HOH A 6 506 6 HOH HOH . 
E 4 HOH A 7 507 7 HOH HOH . 
E 4 HOH A 8 508 8 HOH HOH . 
E 4 HOH A 9 509 9 HOH HOH . 
E 4 HOH A 10 510 10 HOH HOH . 
E 4 HOH A 11 511 11 HOH HOH . 
E 4 HOH A 12 512 12 HOH HOH . 
E 4 HOH A 13 513 13 HOH HOH . 
E 4 HOH A 14 514 14 HOH HOH . 
E 4 HOH A 15 515 15 HOH HOH . 
E 4 HOH A 16 516 16 HOH HOH . 
E 4 HOH A 17 517 17 HOH HOH . 
E 4 HOH A 18 518 18 HOH HOH . 
E 4 HOH A 19 519 19 HOH HOH . 
E 4 HOH A 20 520 20 HOH HOH . 
E 4 HOH A 21 521 21 HOH HOH . 
E 4 HOH A 22 522 22 HOH HOH . 
E 4 HOH A 23 523 23 HOH HOH . 
E 4 HOH A 24 524 24 HOH HOH . 
E 4 HOH A 25 525 25 HOH HOH . 
E 4 HOH A 26 526 26 HOH HOH . 
E 4 HOH A 27 527 27 HOH HOH . 
E 4 HOH A 28 528 28 HOH HOH . 
E 4 HOH A 29 529 29 HOH HOH . 
E 4 HOH A 30 530 30 HOH HOH . 
E 4 HOH A 31 531 31 HOH HOH . 
E 4 HOH A 32 532 32 HOH HOH . 
E 4 HOH A 33 533 34 HOH HOH . 
E 4 HOH A 34 534 35 HOH HOH . 
E 4 HOH A 35 535 36 HOH HOH . 
E 4 HOH A 36 536 37 HOH HOH . 
E 4 HOH A 37 537 38 HOH HOH . 
E 4 HOH A 38 538 39 HOH HOH . 
E 4 HOH A 39 539 40 HOH HOH . 
E 4 HOH A 40 540 41 HOH HOH . 
E 4 HOH A 41 541 42 HOH HOH . 
E 4 HOH A 42 542 43 HOH HOH . 
E 4 HOH A 43 543 46 HOH HOH . 
E 4 HOH A 44 544 48 HOH HOH . 
E 4 HOH A 45 545 49 HOH HOH . 
E 4 HOH A 46 546 50 HOH HOH . 
E 4 HOH A 47 547 51 HOH HOH . 
E 4 HOH A 48 548 53 HOH HOH . 
E 4 HOH A 49 549 54 HOH HOH . 
E 4 HOH A 50 550 55 HOH HOH . 
E 4 HOH A 51 551 56 HOH HOH . 
E 4 HOH A 52 552 57 HOH HOH . 
E 4 HOH A 53 553 58 HOH HOH . 
E 4 HOH A 54 554 59 HOH HOH . 
E 4 HOH A 55 555 61 HOH HOH . 
E 4 HOH A 56 556 63 HOH HOH . 
E 4 HOH A 57 557 64 HOH HOH . 
E 4 HOH A 58 558 65 HOH HOH . 
E 4 HOH A 59 559 66 HOH HOH . 
E 4 HOH A 60 560 67 HOH HOH . 
E 4 HOH A 61 561 69 HOH HOH . 
E 4 HOH A 62 562 73 HOH HOH . 
E 4 HOH A 63 563 74 HOH HOH . 
E 4 HOH A 64 564 75 HOH HOH . 
E 4 HOH A 65 565 76 HOH HOH . 
E 4 HOH A 66 566 78 HOH HOH . 
E 4 HOH A 67 567 79 HOH HOH . 
E 4 HOH A 68 568 80 HOH HOH . 
E 4 HOH A 69 569 84 HOH HOH . 
E 4 HOH A 70 570 89 HOH HOH . 
E 4 HOH A 71 571 90 HOH HOH . 
E 4 HOH A 72 572 91 HOH HOH . 
E 4 HOH A 73 573 93 HOH HOH . 
E 4 HOH A 74 574 95 HOH HOH . 
E 4 HOH A 75 575 99 HOH HOH . 
E 4 HOH A 76 576 101 HOH HOH . 
E 4 HOH A 77 577 103 HOH HOH . 
E 4 HOH A 78 578 104 HOH HOH . 
E 4 HOH A 79 579 105 HOH HOH . 
E 4 HOH A 80 580 106 HOH HOH . 
E 4 HOH A 81 581 109 HOH HOH . 
E 4 HOH A 82 582 110 HOH HOH . 
E 4 HOH A 83 583 112 HOH HOH . 
E 4 HOH A 84 584 113 HOH HOH . 
E 4 HOH A 85 585 114 HOH HOH . 
E 4 HOH A 86 586 115 HOH HOH . 
E 4 HOH A 87 587 116 HOH HOH . 
E 4 HOH A 88 588 117 HOH HOH . 
E 4 HOH A 89 589 118 HOH HOH . 
E 4 HOH A 90 590 119 HOH HOH . 
E 4 HOH A 91 591 120 HOH HOH . 
E 4 HOH A 92 592 122 HOH HOH . 
E 4 HOH A 93 593 123 HOH HOH . 
E 4 HOH A 94 594 124 HOH HOH . 
E 4 HOH A 95 595 125 HOH HOH . 
E 4 HOH A 96 596 126 HOH HOH . 
E 4 HOH A 97 597 127 HOH HOH . 
E 4 HOH A 98 598 128 HOH HOH . 
E 4 HOH A 99 599 129 HOH HOH . 
E 4 HOH A 100 600 132 HOH HOH . 
E 4 HOH A 101 601 133 HOH HOH . 
E 4 HOH A 102 602 134 HOH HOH . 
E 4 HOH A 103 603 135 HOH HOH . 
E 4 HOH A 104 604 136 HOH HOH . 
E 4 HOH A 105 605 137 HOH HOH . 
E 4 HOH A 106 606 138 HOH HOH . 
E 4 HOH A 107 607 139 HOH HOH . 
E 4 HOH A 108 608 140 HOH HOH . 
E 4 HOH A 109 609 141 HOH HOH . 
E 4 HOH A 110 610 142 HOH HOH . 
E 4 HOH A 111 611 143 HOH HOH . 
E 4 HOH A 112 612 144 HOH HOH . 
E 4 HOH A 113 613 145 HOH HOH . 
E 4 HOH A 114 614 146 HOH HOH . 
E 4 HOH A 115 615 147 HOH HOH . 
E 4 HOH A 116 616 148 HOH HOH . 
E 4 HOH A 117 617 149 HOH HOH . 
E 4 HOH A 118 618 150 HOH HOH . 
E 4 HOH A 119 619 151 HOH HOH . 
E 4 HOH A 120 620 152 HOH HOH . 
E 4 HOH A 121 621 153 HOH HOH . 
E 4 HOH A 122 622 154 HOH HOH . 
E 4 HOH A 123 623 155 HOH HOH . 
E 4 HOH A 124 624 156 HOH HOH . 
E 4 HOH A 125 625 157 HOH HOH . 
E 4 HOH A 126 626 158 HOH HOH . 
E 4 HOH A 127 627 159 HOH HOH . 
E 4 HOH A 128 628 160 HOH HOH . 
E 4 HOH A 129 629 161 HOH HOH . 
E 4 HOH A 130 630 162 HOH HOH . 
E 4 HOH A 131 631 163 HOH HOH . 
E 4 HOH A 132 632 164 HOH HOH . 
E 4 HOH A 133 633 165 HOH HOH . 
E 4 HOH A 134 634 166 HOH HOH . 
E 4 HOH A 135 635 167 HOH HOH . 
E 4 HOH A 136 636 168 HOH HOH . 
E 4 HOH A 137 637 169 HOH HOH . 
E 4 HOH A 138 638 170 HOH HOH . 
E 4 HOH A 139 639 171 HOH HOH . 
E 4 HOH A 140 640 172 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 2.407 9.134 -15.513 1 32.8 ? C1 GOL 403 A 1 
HETATM 2 O O1 GOL . . . D 3 1.828 8.415 -16.597 1 29.39 ? O1 GOL 403 A 1 
HETATM 3 C C2 GOL . . . D 3 1.556 9.091 -14.236 1 32.15 ? C2 GOL 403 A 1 
HETATM 4 O O2 GOL . . . D 3 1.879 8.079 -13.337 1 29.56 ? O2 GOL 403 A 1 
HETATM 5 C C3 GOL . . . D 3 1.528 10.312 -13.359 1 33.29 ? C3 GOL 403 A 1 
HETATM 6 O O3 GOL . . . D 3 0.214 10.857 -13.18 1 31.7 ? O3 GOL 403 A 1 
#
_model_server_stats.io_time_ms              83 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           1144 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#