data_4MQ0 # _model_server_result.job_id yvJauUwMOFAJIdCb8dg6_Q _model_server_result.datetime_utc '2024-11-05 04:14:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mq0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 4MQ0 # _exptl.entry_id 4MQ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.182 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'methyl alpha-D-mannopyranoside' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4MQ0 _cell.length_a 77.139 _cell.length_b 86.659 _cell.length_c 127.857 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MQ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 63.9285 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C7 H14 O6' _chem_comp.formula_weight 194.182 _chem_comp.id MMA _chem_comp.mon_nstd_flag n _chem_comp.name 'methyl alpha-D-mannopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'O1-METHYL-MANNOSE;methyl alpha-D-mannoside;methyl D-mannoside;methyl mannoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MMA sing 237 n n C1 O1 MMA sing 238 n n C1 O5 MMA sing 239 n n C1 H1 MMA sing 240 n n C2 C3 MMA sing 241 n n C2 O2 MMA sing 242 n n C2 H2 MMA sing 243 n n C3 C4 MMA sing 244 n n C3 O3 MMA sing 245 n n C3 H3 MMA sing 246 n n C4 C5 MMA sing 247 n n C4 O4 MMA sing 248 n n C4 H4 MMA sing 249 n n C5 C6 MMA sing 250 n n C5 O5 MMA sing 251 n n C5 H5 MMA sing 252 n n C6 O6 MMA sing 253 n n C6 H61 MMA sing 254 n n C6 H62 MMA sing 255 n n C7 O1 MMA sing 256 n n C7 H71 MMA sing 257 n n C7 H72 MMA sing 258 n n C7 H73 MMA sing 259 n n O2 HO2 MMA sing 260 n n O3 HO3 MMA sing 261 n n O4 HO4 MMA sing 262 n n O6 HO6 MMA sing 263 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MMA DManp[1Me]a 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MMA 1-methyl-a-D-mannopyranose 'COMMON NAME' GMML 1 MMA o1-methyl-mannose 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 # _atom_sites.entry_id 4MQ0 _atom_sites.fract_transf_matrix[1][1] 0.012964 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011539 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007821 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MMA A 1 501 444 MMA MMA . C 2 MMA A 1 502 445 MMA MMA . D 2 MMA A 1 503 446 MMA MMA . E 3 HOH A 1 601 1 HOH HOH . E 3 HOH A 2 602 2 HOH HOH . E 3 HOH A 3 603 3 HOH HOH . E 3 HOH A 4 604 4 HOH HOH . E 3 HOH A 5 605 5 HOH HOH . E 3 HOH A 6 606 6 HOH HOH . E 3 HOH A 7 607 7 HOH HOH . E 3 HOH A 8 608 8 HOH HOH . E 3 HOH A 9 609 9 HOH HOH . E 3 HOH A 10 610 10 HOH HOH . E 3 HOH A 11 611 11 HOH HOH . E 3 HOH A 12 612 12 HOH HOH . E 3 HOH A 13 613 13 HOH HOH . E 3 HOH A 14 614 14 HOH HOH . E 3 HOH A 15 615 15 HOH HOH . E 3 HOH A 16 616 16 HOH HOH . E 3 HOH A 17 617 17 HOH HOH . E 3 HOH A 18 618 18 HOH HOH . E 3 HOH A 19 619 19 HOH HOH . E 3 HOH A 20 620 20 HOH HOH . E 3 HOH A 21 621 21 HOH HOH . E 3 HOH A 22 622 22 HOH HOH . E 3 HOH A 23 623 23 HOH HOH . E 3 HOH A 24 624 24 HOH HOH . E 3 HOH A 25 625 25 HOH HOH . E 3 HOH A 26 626 26 HOH HOH . E 3 HOH A 27 627 27 HOH HOH . E 3 HOH A 28 628 28 HOH HOH . E 3 HOH A 29 629 29 HOH HOH . E 3 HOH A 30 630 30 HOH HOH . E 3 HOH A 31 631 31 HOH HOH . E 3 HOH A 32 632 32 HOH HOH . E 3 HOH A 33 633 33 HOH HOH . E 3 HOH A 34 634 34 HOH HOH . E 3 HOH A 35 635 35 HOH HOH . E 3 HOH A 36 636 36 HOH HOH . E 3 HOH A 37 637 37 HOH HOH . E 3 HOH A 38 638 38 HOH HOH . E 3 HOH A 39 639 39 HOH HOH . E 3 HOH A 40 640 40 HOH HOH . E 3 HOH A 41 641 41 HOH HOH . E 3 HOH A 42 642 42 HOH HOH . E 3 HOH A 43 643 43 HOH HOH . E 3 HOH A 44 644 44 HOH HOH . E 3 HOH A 45 645 45 HOH HOH . E 3 HOH A 46 646 46 HOH HOH . E 3 HOH A 47 647 47 HOH HOH . E 3 HOH A 48 648 48 HOH HOH . E 3 HOH A 49 649 49 HOH HOH . E 3 HOH A 50 650 50 HOH HOH . E 3 HOH A 51 651 51 HOH HOH . E 3 HOH A 52 652 52 HOH HOH . E 3 HOH A 53 653 53 HOH HOH . E 3 HOH A 54 654 54 HOH HOH . E 3 HOH A 55 655 55 HOH HOH . E 3 HOH A 56 656 56 HOH HOH . E 3 HOH A 57 657 57 HOH HOH . E 3 HOH A 58 658 58 HOH HOH . E 3 HOH A 59 659 59 HOH HOH . E 3 HOH A 60 660 60 HOH HOH . E 3 HOH A 61 661 61 HOH HOH . E 3 HOH A 62 662 62 HOH HOH . E 3 HOH A 63 663 63 HOH HOH . E 3 HOH A 64 664 64 HOH HOH . E 3 HOH A 65 665 65 HOH HOH . E 3 HOH A 66 666 66 HOH HOH . E 3 HOH A 67 667 67 HOH HOH . E 3 HOH A 68 668 68 HOH HOH . E 3 HOH A 69 669 69 HOH HOH . E 3 HOH A 70 670 70 HOH HOH . E 3 HOH A 71 671 71 HOH HOH . E 3 HOH A 72 672 72 HOH HOH . E 3 HOH A 73 673 73 HOH HOH . E 3 HOH A 74 674 74 HOH HOH . E 3 HOH A 75 675 75 HOH HOH . E 3 HOH A 76 676 76 HOH HOH . E 3 HOH A 77 677 77 HOH HOH . E 3 HOH A 78 678 78 HOH HOH . E 3 HOH A 79 679 79 HOH HOH . E 3 HOH A 80 680 80 HOH HOH . E 3 HOH A 81 681 81 HOH HOH . E 3 HOH A 82 682 82 HOH HOH . E 3 HOH A 83 683 83 HOH HOH . E 3 HOH A 84 684 84 HOH HOH . E 3 HOH A 85 685 85 HOH HOH . E 3 HOH A 86 686 86 HOH HOH . E 3 HOH A 87 687 87 HOH HOH . E 3 HOH A 88 688 88 HOH HOH . E 3 HOH A 89 689 89 HOH HOH . E 3 HOH A 90 690 90 HOH HOH . E 3 HOH A 91 691 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MMA . . . C 2 18.693 -5.338 13.407 1 24.47 ? C1 MMA 502 A 1 HETATM 2 C C2 MMA . . . C 2 19.426 -4.829 14.651 1 23.71 ? C2 MMA 502 A 1 HETATM 3 C C3 MMA . . . C 2 19.036 -5.64 15.877 1 23.12 ? C3 MMA 502 A 1 HETATM 4 C C4 MMA . . . C 2 17.524 -5.65 16.044 1 23.15 ? C4 MMA 502 A 1 HETATM 5 C C5 MMA . . . C 2 16.838 -6.117 14.766 1 23.95 ? C5 MMA 502 A 1 HETATM 6 C C6 MMA . . . C 2 15.322 -5.919 14.85 1 24.42 ? C6 MMA 502 A 1 HETATM 7 C C7 MMA . . . C 2 18.684 -7.146 11.817 1 25.83 ? C7 MMA 502 A 1 HETATM 8 O O1 MMA . . . C 2 19.174 -6.589 13.055 1 24.91 ? O1 MMA 502 A 1 HETATM 9 O O2 MMA . . . C 2 19.097 -3.462 14.854 1 23.15 ? O2 MMA 502 A 1 HETATM 10 O O3 MMA . . . C 2 19.607 -5.06 17.044 1 23.25 ? O3 MMA 502 A 1 HETATM 11 O O4 MMA . . . C 2 17.186 -6.522 17.115 1 22.56 ? O4 MMA 502 A 1 HETATM 12 O O5 MMA . . . C 2 17.288 -5.399 13.615 1 24.47 ? O5 MMA 502 A 1 HETATM 13 O O6 MMA . . . C 2 14.744 -6.042 13.56 1 25.34 ? O6 MMA 502 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #