data_4MRI # _model_server_result.job_id tO2c3vb9Ecgzy9i-NXO-oA _model_server_result.datetime_utc '2024-11-24 18:51:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mri # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 4MRI # _exptl.entry_id 4MRI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 211.11 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-[HYDROXY(METHYL)PHOSPHORYL]-L-ASPARTIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4MRI _cell.length_a 146.17 _cell.length_b 146.17 _cell.length_c 103.134 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MRI _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 21 A HIS 21 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc2 A OE1 GLU 24 A GLU 24 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc3 A OE2 GLU 24 A GLU 24 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc4 A ND1 HIS 116 A HIS 116 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc5 C ZN ZN . A ZN 401 1_555 D OAD AS9 . A AS9 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc6 C ZN ZN . A ZN 401 1_555 D OAG AS9 . A AS9 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc7 B ND1 HIS 21 B HIS 21 1_555 E ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc8 B OE1 GLU 24 B GLU 24 1_555 E ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? metalc ? metalc9 B ND1 HIS 116 B HIS 116 1_555 E ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc10 E ZN ZN . B ZN 401 1_555 F OAD AS9 . B AS9 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc11 E ZN ZN . B ZN 401 1_555 F OAG AS9 . B AS9 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? # _chem_comp.formula 'C5 H10 N O6 P' _chem_comp.formula_weight 211.11 _chem_comp.id AS9 _chem_comp.mon_nstd_flag . _chem_comp.name 'N-[HYDROXY(METHYL)PHOSPHORYL]-L-ASPARTIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms 'N-PHOSPHONOMETHYL-L-ASPARTIC ACID;(2S)-2-(HYDROPEROXY(METHOXY)PHOSPHORYLAMINO)SUCCINIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA PAM AS9 sing 39 n n CAA HAA1 AS9 sing 40 n n CAA HAA2 AS9 sing 41 n n CAA HAA3 AS9 sing 42 n n PAM OAG AS9 doub 43 n n PAM N AS9 sing 44 n n PAM OAD AS9 sing 45 n n OAD HOAD AS9 sing 46 n n N CA AS9 sing 47 n n N H AS9 sing 48 n n CA C AS9 sing 49 n n CA CB AS9 sing 50 n n CA HA AS9 sing 51 n n C O AS9 doub 52 n n C OXT AS9 sing 53 n n OXT HXT AS9 sing 54 n n CB CG AS9 sing 55 n n CB HB2 AS9 sing 56 n n CB HB3 AS9 sing 57 n n CG OD2 AS9 doub 58 n n CG OD1 AS9 sing 59 n n OD1 HD1 AS9 sing 60 n n # _atom_sites.entry_id 4MRI _atom_sites.fract_transf_matrix[1][1] 0.006841 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009696 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 401 401 ZN ZN . D 3 AS9 A 1 402 501 AS9 AS9 . E 2 ZN B 1 401 401 ZN ZN . F 3 AS9 B 1 402 501 AS9 AS9 . G 4 HOH A 1 501 502 HOH HOH . G 4 HOH A 2 502 503 HOH HOH . G 4 HOH A 3 503 504 HOH HOH . G 4 HOH A 4 504 505 HOH HOH . G 4 HOH A 5 505 506 HOH HOH . G 4 HOH A 6 506 507 HOH HOH . G 4 HOH A 7 507 508 HOH HOH . G 4 HOH A 8 508 509 HOH HOH . G 4 HOH A 9 509 510 HOH HOH . G 4 HOH A 10 510 513 HOH HOH . G 4 HOH A 11 511 514 HOH HOH . G 4 HOH A 12 512 515 HOH HOH . G 4 HOH A 13 513 516 HOH HOH . G 4 HOH A 14 514 517 HOH HOH . G 4 HOH A 15 515 519 HOH HOH . G 4 HOH A 16 516 520 HOH HOH . G 4 HOH A 17 517 521 HOH HOH . G 4 HOH A 18 518 522 HOH HOH . G 4 HOH A 19 519 523 HOH HOH . G 4 HOH A 20 520 525 HOH HOH . G 4 HOH A 21 521 526 HOH HOH . G 4 HOH A 22 522 528 HOH HOH . G 4 HOH A 23 523 529 HOH HOH . G 4 HOH A 24 524 531 HOH HOH . G 4 HOH A 25 525 532 HOH HOH . G 4 HOH A 26 526 534 HOH HOH . G 4 HOH A 27 527 536 HOH HOH . G 4 HOH A 28 528 537 HOH HOH . G 4 HOH A 29 529 504 HOH HOH . G 4 HOH A 30 530 1 HOH HOH . G 4 HOH A 31 531 2 HOH HOH . G 4 HOH A 32 532 11 HOH HOH . G 4 HOH A 33 533 12 HOH HOH . H 4 HOH B 1 501 502 HOH HOH . H 4 HOH B 2 502 503 HOH HOH . H 4 HOH B 3 503 506 HOH HOH . H 4 HOH B 4 504 507 HOH HOH . H 4 HOH B 5 505 508 HOH HOH . H 4 HOH B 6 506 511 HOH HOH . H 4 HOH B 7 507 512 HOH HOH . H 4 HOH B 8 508 513 HOH HOH . H 4 HOH B 9 509 515 HOH HOH . H 4 HOH B 10 510 516 HOH HOH . H 4 HOH B 11 511 517 HOH HOH . H 4 HOH B 12 512 518 HOH HOH . H 4 HOH B 13 513 519 HOH HOH . H 4 HOH B 14 514 520 HOH HOH . H 4 HOH B 15 515 521 HOH HOH . H 4 HOH B 16 516 522 HOH HOH . H 4 HOH B 17 517 523 HOH HOH . H 4 HOH B 18 518 524 HOH HOH . H 4 HOH B 19 519 525 HOH HOH . H 4 HOH B 20 520 526 HOH HOH . H 4 HOH B 21 521 527 HOH HOH . H 4 HOH B 22 522 529 HOH HOH . H 4 HOH B 23 523 530 HOH HOH . H 4 HOH B 24 524 531 HOH HOH . H 4 HOH B 25 525 532 HOH HOH . H 4 HOH B 26 526 533 HOH HOH . H 4 HOH B 27 527 534 HOH HOH . H 4 HOH B 28 528 3 HOH HOH . H 4 HOH B 29 529 4 HOH HOH . H 4 HOH B 30 530 5 HOH HOH . H 4 HOH B 31 531 6 HOH HOH . H 4 HOH B 32 532 7 HOH HOH . H 4 HOH B 33 533 8 HOH HOH . H 4 HOH B 34 534 9 HOH HOH . H 4 HOH B 35 535 10 HOH HOH . H 4 HOH B 36 536 13 HOH HOH . H 4 HOH B 37 537 14 HOH HOH . H 4 HOH B 38 538 15 HOH HOH . H 4 HOH B 39 539 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA AS9 . . . F 3 -49.831 21.653 -20.985 1 37.4 ? CAA AS9 402 B 1 HETATM 2 P PAM AS9 . . . F 3 -50.674 21.054 -19.512 1 40.13 ? PAM AS9 402 B 1 HETATM 3 O OAG AS9 . . . F 3 -51.944 20.365 -19.864 1 37.66 ? OAG AS9 402 B 1 HETATM 4 O OAD AS9 . . . F 3 -49.682 20.119 -18.667 1 37.46 ? OAD AS9 402 B 1 HETATM 5 N N AS9 . . . F 3 -51.091 22.401 -18.505 1 40.03 ? N AS9 402 B 1 HETATM 6 C CA AS9 . . . F 3 -52.009 22.226 -17.4 1 40.56 ? CA AS9 402 B 1 HETATM 7 C C AS9 . . . F 3 -53.433 22.19 -17.88 1 40.89 ? C AS9 402 B 1 HETATM 8 O OXT AS9 . . . F 3 -54.325 21.608 -17.212 1 41.46 ? OXT AS9 402 B 1 HETATM 9 O O AS9 . . . F 3 -53.678 22.777 -18.961 1 39.76 ? O AS9 402 B 1 HETATM 10 C CB AS9 . . . F 3 -51.774 23.427 -16.491 1 40.64 ? CB AS9 402 B 1 HETATM 11 C CG AS9 . . . F 3 -51.85 23.084 -15.03 1 39.11 ? CG AS9 402 B 1 HETATM 12 O OD2 AS9 . . . F 3 -51.087 22.213 -14.566 1 39.41 ? OD2 AS9 402 B 1 HETATM 13 O OD1 AS9 . . . F 3 -52.654 23.732 -14.337 1 37.61 ? OD1 AS9 402 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #