data_4MS2
#
_model_server_result.job_id            x7Zy2S87pMZZjFcT9KKAuw 
_model_server_result.datetime_utc      '2024-11-16 08:45:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ms2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":1301}' 
#
_entry.id    4MS2 
#
_exptl.entry_id    4MS2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              678.94 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    20 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          132.69 
_cell.angle_gamma         90 
_cell.entry_id            4MS2 
_cell.length_a            177.79 
_cell.length_b            177.54 
_cell.length_c            131.14 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4MS2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
? 2 AA N N 
? 2 BA N N 
? 2 CA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 F CA CA . A CA 1302 1_555 DA O HOH . A HOH 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc2 F CA CA . A CA 1302 1_555 DA O HOH . A HOH 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc3 F CA CA . A CA 1302 1_555 EA O HOH . B HOH 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc4 F CA CA . A CA 1302 1_555 EA O HOH . B HOH 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? 
metalc ? metalc5 F CA CA . A CA 1302 1_555 FA O HOH . C HOH 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc6 F CA CA . A CA 1302 1_555 FA O HOH . C HOH 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc7 F CA CA . A CA 1302 1_555 GA O HOH . D HOH 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc8 F CA CA . A CA 1302 1_555 GA O HOH . D HOH 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc9 G CA CA . A CA 1303 1_555 DA O HOH . A HOH 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.167 ? 
metalc ? metalc10 G CA CA . A CA 1303 1_555 DA O HOH . A HOH 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? 
metalc ? metalc11 G CA CA . A CA 1303 1_555 EA O HOH . B HOH 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? 
metalc ? metalc12 G CA CA . A CA 1303 1_555 FA O HOH . C HOH 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
metalc ? metalc13 G CA CA . A CA 1303 1_555 GA O HOH . D HOH 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? 
metalc ? metalc14 DA O HOH . A HOH 1410 1_555 Y CA CA . D CA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? 
metalc ? metalc15 EA O HOH . B HOH 1408 1_555 Y CA CA . D CA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
metalc ? metalc16 FA O HOH . C HOH 1409 1_555 Y CA CA . D CA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
metalc ? metalc17 Y CA CA . D CA 1302 1_555 GA O HOH . D HOH 1411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
#
_chem_comp.formula           'C36 H73 N O8 P 1' 
_chem_comp.formula_weight    678.94 
_chem_comp.id                PX4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 P1 PX4 sing 277 n n 
O1 H1P PX4 sing 278 n n 
O2 P1 PX4 doub 279 n n 
P1 O3 PX4 sing 280 n n 
P1 O4 PX4 sing 281 n n 
O3 C1 PX4 sing 282 n n 
C1 C2 PX4 sing 283 n n 
C1 H1 PX4 sing 284 n n 
C1 H2 PX4 sing 285 n n 
C2 N1 PX4 sing 286 n n 
C2 H3 PX4 sing 287 n n 
C2 H4 PX4 sing 288 n n 
N1 C3 PX4 sing 289 n n 
N1 C4 PX4 sing 290 n n 
N1 C5 PX4 sing 291 n n 
C3 H5 PX4 sing 292 n n 
C3 H6 PX4 sing 293 n n 
C3 H7 PX4 sing 294 n n 
C4 H8 PX4 sing 295 n n 
C4 H9 PX4 sing 296 n n 
C4 H10 PX4 sing 297 n n 
C5 H11 PX4 sing 298 n n 
C5 H12 PX4 sing 299 n n 
C5 H13 PX4 sing 300 n n 
O4 C6 PX4 sing 301 n n 
C6 C7 PX4 sing 302 n n 
C6 H14 PX4 sing 303 n n 
C6 H15 PX4 sing 304 n n 
C7 C8 PX4 sing 305 n n 
C7 O7 PX4 sing 306 n n 
C7 H16 PX4 sing 307 n n 
C8 O5 PX4 sing 308 n n 
C8 H17 PX4 sing 309 n n 
C8 H18 PX4 sing 310 n n 
O5 C9 PX4 sing 311 n n 
C9 O6 PX4 doub 312 n n 
C9 C10 PX4 sing 313 n n 
C10 C11 PX4 sing 314 n n 
C10 H19 PX4 sing 315 n n 
C10 H20 PX4 sing 316 n n 
C11 C12 PX4 sing 317 n n 
C11 H21 PX4 sing 318 n n 
C11 H22 PX4 sing 319 n n 
C12 C13 PX4 sing 320 n n 
C12 H23 PX4 sing 321 n n 
C12 H24 PX4 sing 322 n n 
C13 C14 PX4 sing 323 n n 
C13 H25 PX4 sing 324 n n 
C13 H26 PX4 sing 325 n n 
C14 C15 PX4 sing 326 n n 
C14 H27 PX4 sing 327 n n 
C14 H28 PX4 sing 328 n n 
C15 C16 PX4 sing 329 n n 
C15 H29 PX4 sing 330 n n 
C15 H30 PX4 sing 331 n n 
C16 C17 PX4 sing 332 n n 
C16 H31 PX4 sing 333 n n 
C16 H32 PX4 sing 334 n n 
C17 C18 PX4 sing 335 n n 
C17 H33 PX4 sing 336 n n 
C17 H34 PX4 sing 337 n n 
C18 C19 PX4 sing 338 n n 
C18 H35 PX4 sing 339 n n 
C18 H36 PX4 sing 340 n n 
C19 C20 PX4 sing 341 n n 
C19 H37 PX4 sing 342 n n 
C19 H38 PX4 sing 343 n n 
C20 C21 PX4 sing 344 n n 
C20 H39 PX4 sing 345 n n 
C20 H40 PX4 sing 346 n n 
C21 C22 PX4 sing 347 n n 
C21 H41 PX4 sing 348 n n 
C21 H42 PX4 sing 349 n n 
C22 H43 PX4 sing 350 n n 
C22 H44 PX4 sing 351 n n 
C22 H45 PX4 sing 352 n n 
O7 C23 PX4 sing 353 n n 
C23 O8 PX4 doub 354 n n 
C23 C24 PX4 sing 355 n n 
C24 C25 PX4 sing 356 n n 
C24 H46 PX4 sing 357 n n 
C24 H47 PX4 sing 358 n n 
C25 C26 PX4 sing 359 n n 
C25 H48 PX4 sing 360 n n 
C25 H49 PX4 sing 361 n n 
C26 C27 PX4 sing 362 n n 
C26 H50 PX4 sing 363 n n 
C26 H51 PX4 sing 364 n n 
C27 C28 PX4 sing 365 n n 
C27 H52 PX4 sing 366 n n 
C27 H53 PX4 sing 367 n n 
C28 C29 PX4 sing 368 n n 
C28 H54 PX4 sing 369 n n 
C28 H55 PX4 sing 370 n n 
C29 C30 PX4 sing 371 n n 
C29 H56 PX4 sing 372 n n 
C29 H57 PX4 sing 373 n n 
C30 C31 PX4 sing 374 n n 
C30 H58 PX4 sing 375 n n 
C30 H59 PX4 sing 376 n n 
C31 C32 PX4 sing 377 n n 
C31 H60 PX4 sing 378 n n 
C31 H61 PX4 sing 379 n n 
C32 C33 PX4 sing 380 n n 
C32 H62 PX4 sing 381 n n 
C32 H63 PX4 sing 382 n n 
C33 C34 PX4 sing 383 n n 
C33 H64 PX4 sing 384 n n 
C33 H65 PX4 sing 385 n n 
C34 C35 PX4 sing 386 n n 
C34 H66 PX4 sing 387 n n 
C34 H67 PX4 sing 388 n n 
C35 C36 PX4 sing 389 n n 
C35 H68 PX4 sing 390 n n 
C35 H69 PX4 sing 391 n n 
C36 H70 PX4 sing 392 n n 
C36 H71 PX4 sing 393 n n 
C36 H72 PX4 sing 394 n n 
#
_atom_sites.entry_id                     4MS2 
_atom_sites.fract_transf_matrix[1][1]    0.005625 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005188 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005633 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010374 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PX4 A 1 1301 4011 PX4 PX4 . 
F 3 CA A 1 1302 1 CA CA . 
G 3 CA A 1 1303 1 CA CA . 
H 3 CA A 1 1304 1 CA CA . 
I 2 PX4 A 1 1305 1 PX4 PX4 . 
J 2 PX4 A 1 1306 1 PX4 PX4 . 
K 2 PX4 A 1 1307 1 PX4 PX4 . 
L 2 PX4 B 1 1301 4011 PX4 PX4 . 
M 2 PX4 B 1 1302 1 PX4 PX4 . 
N 2 PX4 B 1 1303 1 PX4 PX4 . 
O 2 PX4 B 1 1304 1 PX4 PX4 . 
P 2 PX4 B 1 1305 1 PX4 PX4 . 
Q 2 PX4 B 1 1306 1 PX4 PX4 . 
R 2 PX4 C 1 1301 4011 PX4 PX4 . 
S 2 PX4 C 1 1302 1 PX4 PX4 . 
T 2 PX4 C 1 1303 1 PX4 PX4 . 
U 2 PX4 C 1 1304 1 PX4 PX4 . 
V 2 PX4 C 1 1305 1 PX4 PX4 . 
W 2 PX4 C 1 1306 1 PX4 PX4 . 
X 2 PX4 D 1 1301 4011 PX4 PX4 . 
Y 3 CA D 1 1302 1 CA CA . 
Z 3 CA D 1 1303 1 CA CA . 
AA 2 PX4 D 1 1304 1 PX4 PX4 . 
BA 2 PX4 D 1 1305 1 PX4 PX4 . 
CA 2 PX4 D 1 1306 1 PX4 PX4 . 
DA 4 HOH A 1 1401 4 HOH HOH . 
DA 4 HOH A 2 1402 5 HOH HOH . 
DA 4 HOH A 3 1403 4 HOH HOH . 
DA 4 HOH A 4 1404 5 HOH HOH . 
DA 4 HOH A 5 1405 4 HOH HOH . 
DA 4 HOH A 6 1406 7 HOH HOH . 
DA 4 HOH A 7 1407 3 HOH HOH . 
DA 4 HOH A 8 1408 1 HOH HOH . 
DA 4 HOH A 9 1409 2 HOH HOH . 
DA 4 HOH A 10 1410 3 HOH HOH . 
EA 4 HOH B 1 1401 1 HOH HOH . 
EA 4 HOH B 2 1402 8 HOH HOH . 
EA 4 HOH B 3 1403 3 HOH HOH . 
EA 4 HOH B 4 1404 1 HOH HOH . 
EA 4 HOH B 5 1405 6 HOH HOH . 
EA 4 HOH B 6 1406 4 HOH HOH . 
EA 4 HOH B 7 1407 3 HOH HOH . 
EA 4 HOH B 8 1408 2 HOH HOH . 
FA 4 HOH C 1 1401 2 HOH HOH . 
FA 4 HOH C 2 1402 6 HOH HOH . 
FA 4 HOH C 3 1403 1 HOH HOH . 
FA 4 HOH C 4 1404 6 HOH HOH . 
FA 4 HOH C 5 1405 8 HOH HOH . 
FA 4 HOH C 6 1406 2 HOH HOH . 
FA 4 HOH C 7 1407 2 HOH HOH . 
FA 4 HOH C 8 1408 4 HOH HOH . 
FA 4 HOH C 9 1409 4 HOH HOH . 
GA 4 HOH D 1 1401 3 HOH HOH . 
GA 4 HOH D 2 1402 7 HOH HOH . 
GA 4 HOH D 3 1403 2 HOH HOH . 
GA 4 HOH D 4 1404 7 HOH HOH . 
GA 4 HOH D 5 1405 8 HOH HOH . 
GA 4 HOH D 6 1406 5 HOH HOH . 
GA 4 HOH D 7 1407 1 HOH HOH . 
GA 4 HOH D 8 1408 3 HOH HOH . 
GA 4 HOH D 9 1409 4 HOH HOH . 
GA 4 HOH D 10 1410 1 HOH HOH . 
GA 4 HOH D 11 1411 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 PX4 . . . X 2 200.749 34.328 43.718 1 116.85 -1 O1 PX4 1301 D 1 
HETATM 2 O O2 PX4 . . . X 2 202.319 34.872 41.877 1 109.77 ? O2 PX4 1301 D 1 
HETATM 3 P P1 PX4 . . . X 2 201.473 33.774 42.5 1 123.04 ? P1 PX4 1301 D 1 
HETATM 4 O O3 PX4 . . . X 2 202.426 32.552 42.869 1 122.5 ? O3 PX4 1301 D 1 
HETATM 5 C C1 PX4 . . . X 2 203.78 32.568 42.45 1 110.94 ? C1 PX4 1301 D 1 
HETATM 6 O O4 PX4 . . . X 2 200.368 33.266 41.476 1 115.36 ? O4 PX4 1301 D 1 
HETATM 7 C C6 PX4 . . . X 2 200.46 31.966 40.934 1 109.48 ? C6 PX4 1301 D 1 
HETATM 8 C C7 PX4 . . . X 2 199.206 31.715 40.13 1 102.08 ? C7 PX4 1301 D 1 
HETATM 9 C C8 PX4 . . . X 2 199.036 32.845 39.128 1 96.46 ? C8 PX4 1301 D 1 
HETATM 10 O O5 PX4 . . . X 2 200.287 33.187 38.558 1 99.24 ? O5 PX4 1301 D 1 
HETATM 11 C C9 PX4 . . . X 2 200.552 32.559 37.314 1 101.98 ? C9 PX4 1301 D 1 
HETATM 12 O O6 PX4 . . . X 2 201.241 31.342 37.527 1 107.26 ? O6 PX4 1301 D 1 
HETATM 13 C C10 PX4 . . . X 2 201.359 33.459 36.389 1 94.19 ? C10 PX4 1301 D 1 
HETATM 14 C C11 PX4 . . . X 2 201.663 32.854 35.03 1 87.28 ? C11 PX4 1301 D 1 
HETATM 15 C C12 PX4 . . . X 2 202.462 33.816 34.178 1 89.68 ? C12 PX4 1301 D 1 
HETATM 16 C C13 PX4 . . . X 2 202.268 33.635 32.685 1 88.57 ? C13 PX4 1301 D 1 
HETATM 17 C C14 PX4 . . . X 2 202.646 34.868 31.876 1 90.27 ? C14 PX4 1301 D 1 
HETATM 18 C C15 PX4 . . . X 2 201.584 35.263 30.86 1 93.02 ? C15 PX4 1301 D 1 
HETATM 19 C C16 PX4 . . . X 2 201.539 36.739 30.509 1 84.12 ? C16 PX4 1301 D 1 
HETATM 20 C C17 PX4 . . . X 2 200.168 37.197 30.046 1 79.39 ? C17 PX4 1301 D 1 
HETATM 21 O O7 PX4 . . . X 2 199.309 30.449 39.509 1 100.11 ? O7 PX4 1301 D 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           21 
#