data_4MS2
#
_model_server_result.job_id            RQWGEx_vDBXzHUseiuhezg 
_model_server_result.datetime_utc      '2024-11-16 08:52:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ms2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Y","auth_seq_id":1302}' 
#
_entry.id    4MS2 
#
_exptl.entry_id    4MS2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          132.69 
_cell.angle_gamma         90 
_cell.entry_id            4MS2 
_cell.length_a            177.79 
_cell.length_b            177.54 
_cell.length_c            131.14 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4MS2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 Y N N 
? 3 Z N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 F CA CA . A CA 1302 1_555 DA O HOH . A HOH 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc2 F CA CA . A CA 1302 1_555 DA O HOH . A HOH 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc3 F CA CA . A CA 1302 1_555 EA O HOH . B HOH 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc4 F CA CA . A CA 1302 1_555 EA O HOH . B HOH 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? 
metalc ? metalc5 F CA CA . A CA 1302 1_555 FA O HOH . C HOH 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc6 F CA CA . A CA 1302 1_555 FA O HOH . C HOH 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc7 F CA CA . A CA 1302 1_555 GA O HOH . D HOH 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc8 F CA CA . A CA 1302 1_555 GA O HOH . D HOH 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc9 G CA CA . A CA 1303 1_555 DA O HOH . A HOH 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.167 ? 
metalc ? metalc10 G CA CA . A CA 1303 1_555 DA O HOH . A HOH 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? 
metalc ? metalc11 G CA CA . A CA 1303 1_555 EA O HOH . B HOH 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? 
metalc ? metalc12 G CA CA . A CA 1303 1_555 FA O HOH . C HOH 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
metalc ? metalc13 G CA CA . A CA 1303 1_555 GA O HOH . D HOH 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? 
metalc ? metalc14 DA O HOH . A HOH 1410 1_555 Y CA CA . D CA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? 
metalc ? metalc15 EA O HOH . B HOH 1408 1_555 Y CA CA . D CA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
metalc ? metalc16 FA O HOH . C HOH 1409 1_555 Y CA CA . D CA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
metalc ? metalc17 Y CA CA . D CA 1302 1_555 GA O HOH . D HOH 1411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4MS2 
_atom_sites.fract_transf_matrix[1][1]    0.005625 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005188 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005633 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010374 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PX4 A 1 1301 4011 PX4 PX4 . 
F 3 CA A 1 1302 1 CA CA . 
G 3 CA A 1 1303 1 CA CA . 
H 3 CA A 1 1304 1 CA CA . 
I 2 PX4 A 1 1305 1 PX4 PX4 . 
J 2 PX4 A 1 1306 1 PX4 PX4 . 
K 2 PX4 A 1 1307 1 PX4 PX4 . 
L 2 PX4 B 1 1301 4011 PX4 PX4 . 
M 2 PX4 B 1 1302 1 PX4 PX4 . 
N 2 PX4 B 1 1303 1 PX4 PX4 . 
O 2 PX4 B 1 1304 1 PX4 PX4 . 
P 2 PX4 B 1 1305 1 PX4 PX4 . 
Q 2 PX4 B 1 1306 1 PX4 PX4 . 
R 2 PX4 C 1 1301 4011 PX4 PX4 . 
S 2 PX4 C 1 1302 1 PX4 PX4 . 
T 2 PX4 C 1 1303 1 PX4 PX4 . 
U 2 PX4 C 1 1304 1 PX4 PX4 . 
V 2 PX4 C 1 1305 1 PX4 PX4 . 
W 2 PX4 C 1 1306 1 PX4 PX4 . 
X 2 PX4 D 1 1301 4011 PX4 PX4 . 
Y 3 CA D 1 1302 1 CA CA . 
Z 3 CA D 1 1303 1 CA CA . 
AA 2 PX4 D 1 1304 1 PX4 PX4 . 
BA 2 PX4 D 1 1305 1 PX4 PX4 . 
CA 2 PX4 D 1 1306 1 PX4 PX4 . 
DA 4 HOH A 1 1401 4 HOH HOH . 
DA 4 HOH A 2 1402 5 HOH HOH . 
DA 4 HOH A 3 1403 4 HOH HOH . 
DA 4 HOH A 4 1404 5 HOH HOH . 
DA 4 HOH A 5 1405 4 HOH HOH . 
DA 4 HOH A 6 1406 7 HOH HOH . 
DA 4 HOH A 7 1407 3 HOH HOH . 
DA 4 HOH A 8 1408 1 HOH HOH . 
DA 4 HOH A 9 1409 2 HOH HOH . 
DA 4 HOH A 10 1410 3 HOH HOH . 
EA 4 HOH B 1 1401 1 HOH HOH . 
EA 4 HOH B 2 1402 8 HOH HOH . 
EA 4 HOH B 3 1403 3 HOH HOH . 
EA 4 HOH B 4 1404 1 HOH HOH . 
EA 4 HOH B 5 1405 6 HOH HOH . 
EA 4 HOH B 6 1406 4 HOH HOH . 
EA 4 HOH B 7 1407 3 HOH HOH . 
EA 4 HOH B 8 1408 2 HOH HOH . 
FA 4 HOH C 1 1401 2 HOH HOH . 
FA 4 HOH C 2 1402 6 HOH HOH . 
FA 4 HOH C 3 1403 1 HOH HOH . 
FA 4 HOH C 4 1404 6 HOH HOH . 
FA 4 HOH C 5 1405 8 HOH HOH . 
FA 4 HOH C 6 1406 2 HOH HOH . 
FA 4 HOH C 7 1407 2 HOH HOH . 
FA 4 HOH C 8 1408 4 HOH HOH . 
FA 4 HOH C 9 1409 4 HOH HOH . 
GA 4 HOH D 1 1401 3 HOH HOH . 
GA 4 HOH D 2 1402 7 HOH HOH . 
GA 4 HOH D 3 1403 2 HOH HOH . 
GA 4 HOH D 4 1404 7 HOH HOH . 
GA 4 HOH D 5 1405 8 HOH HOH . 
GA 4 HOH D 6 1406 5 HOH HOH . 
GA 4 HOH D 7 1407 1 HOH HOH . 
GA 4 HOH D 8 1408 3 HOH HOH . 
GA 4 HOH D 9 1409 4 HOH HOH . 
GA 4 HOH D 10 1410 1 HOH HOH . 
GA 4 HOH D 11 1411 1 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         Y 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               177.847 
_atom_site.Cartn_y               43.27 
_atom_site.Cartn_z               11.004 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        59.78 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           1302 
_atom_site.auth_asym_id          D 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#