data_4MSC
#
_model_server_result.job_id            AmIxK_XmzMceAIGQBDKbSQ 
_model_server_result.datetime_utc      '2024-11-08 15:34:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4msc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":901}' 
#
_entry.id    4MSC 
#
_exptl.entry_id    4MSC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4MSC 
_cell.length_a            51.38 
_cell.length_b            82.085 
_cell.length_c            155.926 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4MSC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,H 1 1 
B,F,G,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 54 A CYS 498 1_555 A SG CYS 58 A CYS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc1 A NE2 HIS 85 A HIS 529 1_555 D NI NI . A NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
metalc ? metalc2 A NE2 HIS 119 A HIS 563 1_555 D NI NI . A NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc3 A OD2 ASP 120 A ASP 564 1_555 D NI NI . A NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
metalc ? metalc4 A OD1 ASP 120 A ASP 564 1_555 E NI NI . A NI 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc5 A OD2 ASP 230 A ASP 674 1_555 D NI NI . A NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc6 D NI NI . A NI 901 1_555 H O HOH . A HOH 1019 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? 
metalc ? metalc7 E NI NI . A NI 902 1_555 H O HOH . A HOH 1018 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.9 ? 
metalc ? metalc8 E NI NI . A NI 902 1_555 H O HOH . A HOH 1019 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc9 E NI NI . A NI 902 1_555 H O HOH . A HOH 1020 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
metalc ? metalc10 E NI NI . A NI 902 1_555 H O HOH . A HOH 1021 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc11 E NI NI . A NI 902 1_555 H O HOH . A HOH 1022 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc12 B NE2 HIS 85 B HIS 529 1_555 F NI NI . B NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc13 B NE2 HIS 119 B HIS 563 1_555 F NI NI . B NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc14 B OD2 ASP 120 B ASP 564 1_555 F NI NI . B NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc15 B OD1 ASP 120 B ASP 564 1_555 G NI NI . B NI 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
metalc ? metalc16 B OD1 ASP 230 B ASP 674 1_555 F NI NI . B NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc17 F NI NI . B NI 901 1_555 I O HOH . B HOH 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc18 F NI NI . B NI 901 1_555 I O HOH . B HOH 1011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? 
metalc ? metalc19 G NI NI . B NI 902 1_555 I O HOH . B HOH 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
metalc ? metalc20 G NI NI . B NI 902 1_555 I O HOH . B HOH 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc21 G NI NI . B NI 902 1_555 I O HOH . B HOH 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc22 G NI NI . B NI 902 1_555 I O HOH . B HOH 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc23 G NI NI . B NI 902 1_555 I O HOH . B HOH 1011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4MSC 
_atom_sites.fract_transf_matrix[1][1]    0.019463 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012182 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006413 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 2ZT A 1 900 900 2ZT 2ZT . 
D 3 NI A 1 901 901 NI NI . 
E 3 NI A 1 902 902 NI NI . 
F 3 NI B 1 901 901 NI NI . 
G 3 NI B 1 902 902 NI NI . 
H 4 HOH A 1 1001 2 HOH HOH . 
H 4 HOH A 2 1002 3 HOH HOH . 
H 4 HOH A 3 1003 4 HOH HOH . 
H 4 HOH A 4 1004 5 HOH HOH . 
H 4 HOH A 5 1005 6 HOH HOH . 
H 4 HOH A 6 1006 7 HOH HOH . 
H 4 HOH A 7 1007 10 HOH HOH . 
H 4 HOH A 8 1008 13 HOH HOH . 
H 4 HOH A 9 1009 14 HOH HOH . 
H 4 HOH A 10 1010 15 HOH HOH . 
H 4 HOH A 11 1011 16 HOH HOH . 
H 4 HOH A 12 1012 17 HOH HOH . 
H 4 HOH A 13 1013 18 HOH HOH . 
H 4 HOH A 14 1014 19 HOH HOH . 
H 4 HOH A 15 1015 20 HOH HOH . 
H 4 HOH A 16 1016 21 HOH HOH . 
H 4 HOH A 17 1017 23 HOH HOH . 
H 4 HOH A 18 1018 24 HOH HOH . 
H 4 HOH A 19 1019 25 HOH HOH . 
H 4 HOH A 20 1020 26 HOH HOH . 
H 4 HOH A 21 1021 27 HOH HOH . 
H 4 HOH A 22 1022 28 HOH HOH . 
H 4 HOH A 23 1023 34 HOH HOH . 
H 4 HOH A 24 1024 35 HOH HOH . 
I 4 HOH B 1 1001 1 HOH HOH . 
I 4 HOH B 2 1002 8 HOH HOH . 
I 4 HOH B 3 1003 9 HOH HOH . 
I 4 HOH B 4 1004 11 HOH HOH . 
I 4 HOH B 5 1005 12 HOH HOH . 
I 4 HOH B 6 1006 22 HOH HOH . 
I 4 HOH B 7 1007 29 HOH HOH . 
I 4 HOH B 8 1008 30 HOH HOH . 
I 4 HOH B 9 1009 31 HOH HOH . 
I 4 HOH B 10 1010 32 HOH HOH . 
I 4 HOH B 11 1011 33 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               9.781 
_atom_site.Cartn_y               6.624 
_atom_site.Cartn_z               48.33 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        48.89 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           901 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           222 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#