data_4MSC # _model_server_result.job_id bkHgn3DY7235cKV2ORppnQ _model_server_result.datetime_utc '2024-11-08 15:36:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4msc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":902}' # _entry.id 4MSC # _exptl.entry_id 4MSC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4MSC _cell.length_a 51.38 _cell.length_b 82.085 _cell.length_c 155.926 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MSC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 A CYS 498 1_555 A SG CYS 58 A CYS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc1 A NE2 HIS 85 A HIS 529 1_555 D NI NI . A NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc2 A NE2 HIS 119 A HIS 563 1_555 D NI NI . A NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc3 A OD2 ASP 120 A ASP 564 1_555 D NI NI . A NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc4 A OD1 ASP 120 A ASP 564 1_555 E NI NI . A NI 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc5 A OD2 ASP 230 A ASP 674 1_555 D NI NI . A NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc6 D NI NI . A NI 901 1_555 H O HOH . A HOH 1019 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? metalc ? metalc7 E NI NI . A NI 902 1_555 H O HOH . A HOH 1018 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.9 ? metalc ? metalc8 E NI NI . A NI 902 1_555 H O HOH . A HOH 1019 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc9 E NI NI . A NI 902 1_555 H O HOH . A HOH 1020 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc10 E NI NI . A NI 902 1_555 H O HOH . A HOH 1021 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc11 E NI NI . A NI 902 1_555 H O HOH . A HOH 1022 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc12 B NE2 HIS 85 B HIS 529 1_555 F NI NI . B NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc13 B NE2 HIS 119 B HIS 563 1_555 F NI NI . B NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc14 B OD2 ASP 120 B ASP 564 1_555 F NI NI . B NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc15 B OD1 ASP 120 B ASP 564 1_555 G NI NI . B NI 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc16 B OD1 ASP 230 B ASP 674 1_555 F NI NI . B NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc17 F NI NI . B NI 901 1_555 I O HOH . B HOH 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc18 F NI NI . B NI 901 1_555 I O HOH . B HOH 1011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc19 G NI NI . B NI 902 1_555 I O HOH . B HOH 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc20 G NI NI . B NI 902 1_555 I O HOH . B HOH 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc21 G NI NI . B NI 902 1_555 I O HOH . B HOH 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc22 G NI NI . B NI 902 1_555 I O HOH . B HOH 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc23 G NI NI . B NI 902 1_555 I O HOH . B HOH 1011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4MSC _atom_sites.fract_transf_matrix[1][1] 0.019463 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012182 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006413 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2ZT A 1 900 900 2ZT 2ZT . D 3 NI A 1 901 901 NI NI . E 3 NI A 1 902 902 NI NI . F 3 NI B 1 901 901 NI NI . G 3 NI B 1 902 902 NI NI . H 4 HOH A 1 1001 2 HOH HOH . H 4 HOH A 2 1002 3 HOH HOH . H 4 HOH A 3 1003 4 HOH HOH . H 4 HOH A 4 1004 5 HOH HOH . H 4 HOH A 5 1005 6 HOH HOH . H 4 HOH A 6 1006 7 HOH HOH . H 4 HOH A 7 1007 10 HOH HOH . H 4 HOH A 8 1008 13 HOH HOH . H 4 HOH A 9 1009 14 HOH HOH . H 4 HOH A 10 1010 15 HOH HOH . H 4 HOH A 11 1011 16 HOH HOH . H 4 HOH A 12 1012 17 HOH HOH . H 4 HOH A 13 1013 18 HOH HOH . H 4 HOH A 14 1014 19 HOH HOH . H 4 HOH A 15 1015 20 HOH HOH . H 4 HOH A 16 1016 21 HOH HOH . H 4 HOH A 17 1017 23 HOH HOH . H 4 HOH A 18 1018 24 HOH HOH . H 4 HOH A 19 1019 25 HOH HOH . H 4 HOH A 20 1020 26 HOH HOH . H 4 HOH A 21 1021 27 HOH HOH . H 4 HOH A 22 1022 28 HOH HOH . H 4 HOH A 23 1023 34 HOH HOH . H 4 HOH A 24 1024 35 HOH HOH . I 4 HOH B 1 1001 1 HOH HOH . I 4 HOH B 2 1002 8 HOH HOH . I 4 HOH B 3 1003 9 HOH HOH . I 4 HOH B 4 1004 11 HOH HOH . I 4 HOH B 5 1005 12 HOH HOH . I 4 HOH B 6 1006 22 HOH HOH . I 4 HOH B 7 1007 29 HOH HOH . I 4 HOH B 8 1008 30 HOH HOH . I 4 HOH B 9 1009 31 HOH HOH . I 4 HOH B 10 1010 32 HOH HOH . I 4 HOH B 11 1011 33 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 10.773 _atom_site.Cartn_y 4.488 _atom_site.Cartn_z 45.441 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 67.41 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 902 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #