data_4MSD # _model_server_result.job_id 2Io4fKaIx3wSEBOnvrnkrA _model_server_result.datetime_utc '2025-03-01 07:30:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4msd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":508}' # _entry.id 4MSD # _exptl.entry_id 4MSD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.41 _cell.angle_gamma 90 _cell.entry_id 4MSD _cell.length_a 58.048 _cell.length_b 74.117 _cell.length_c 64.865 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MSD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,V 1 1 B,M,N,O,P,Q,R,S,T,U,W 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 103 A HIS 341 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc2 A NE2 HIS 105 A HIS 343 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc3 A OD2 ASP 116 A ASP 354 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc4 A NE2 HIS 118 A HIS 356 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc5 A SG CYS 159 A CYS 397 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc6 A NE2 HIS 166 A HIS 404 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc7 A NE2 HIS 168 A HIS 406 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? metalc ? metalc8 C ZN ZN . A ZN 501 1_555 V O HOH . A HOH 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc9 B NE2 HIS 103 B HIS 341 1_555 M ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc10 B NE2 HIS 105 B HIS 343 1_555 M ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc11 B OD2 ASP 116 B ASP 354 1_555 M ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? metalc ? metalc12 B OD1 ASP 116 B ASP 354 1_555 M ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc13 B NE2 HIS 118 B HIS 356 1_555 N ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc14 B SG CYS 159 B CYS 397 1_555 N ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc15 B NE2 HIS 166 B HIS 404 1_555 N ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc16 B NE2 HIS 168 B HIS 406 1_555 N ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc17 M ZN ZN . B ZN 501 1_555 W O HOH . B HOH 624 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.884 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 100 n n C1 C2 EDO sing 101 n n C1 H11 EDO sing 102 n n C1 H12 EDO sing 103 n n O1 HO1 EDO sing 104 n n C2 O2 EDO sing 105 n n C2 H21 EDO sing 106 n n C2 H22 EDO sing 107 n n O2 HO2 EDO sing 108 n n # _atom_sites.entry_id 4MSD _atom_sites.fract_transf_matrix[1][1] 0.017227 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007457 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013492 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016799 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 501 1 ZN ZN . D 2 ZN A 1 502 2 ZN ZN . E 3 EDO A 1 503 4 EDO EDO . F 3 EDO A 1 504 5 EDO EDO . G 3 EDO A 1 505 6 EDO EDO . H 3 EDO A 1 506 9 EDO EDO . I 3 EDO A 1 507 14 EDO EDO . J 3 EDO A 1 508 16 EDO EDO . K 3 EDO A 1 509 18 EDO EDO . L 4 DTT A 1 510 1 DTT DTT . M 2 ZN B 1 501 3 ZN ZN . N 2 ZN B 1 502 4 ZN ZN . O 3 EDO B 1 503 1 EDO EDO . P 3 EDO B 1 504 2 EDO EDO . Q 3 EDO B 1 505 3 EDO EDO . R 3 EDO B 1 506 7 EDO EDO . S 3 EDO B 1 507 8 EDO EDO . T 3 EDO B 1 508 10 EDO EDO . U 3 EDO B 1 509 15 EDO EDO . V 5 HOH A 1 601 9 HOH HOH . V 5 HOH A 2 602 11 HOH HOH . V 5 HOH A 3 603 14 HOH HOH . V 5 HOH A 4 604 15 HOH HOH . V 5 HOH A 5 605 16 HOH HOH . V 5 HOH A 6 606 17 HOH HOH . V 5 HOH A 7 607 27 HOH HOH . V 5 HOH A 8 608 28 HOH HOH . V 5 HOH A 9 609 33 HOH HOH . V 5 HOH A 10 610 36 HOH HOH . V 5 HOH A 11 611 37 HOH HOH . V 5 HOH A 12 612 40 HOH HOH . V 5 HOH A 13 613 42 HOH HOH . V 5 HOH A 14 614 46 HOH HOH . V 5 HOH A 15 615 49 HOH HOH . V 5 HOH A 16 616 51 HOH HOH . V 5 HOH A 17 617 57 HOH HOH . V 5 HOH A 18 618 58 HOH HOH . V 5 HOH A 19 619 62 HOH HOH . V 5 HOH A 20 620 63 HOH HOH . V 5 HOH A 21 621 64 HOH HOH . V 5 HOH A 22 622 65 HOH HOH . V 5 HOH A 23 623 67 HOH HOH . V 5 HOH A 24 624 72 HOH HOH . V 5 HOH A 25 625 75 HOH HOH . V 5 HOH A 26 626 77 HOH HOH . V 5 HOH A 27 627 80 HOH HOH . V 5 HOH A 28 628 81 HOH HOH . V 5 HOH A 29 629 86 HOH HOH . V 5 HOH A 30 630 89 HOH HOH . V 5 HOH A 31 631 103 HOH HOH . V 5 HOH A 32 632 104 HOH HOH . V 5 HOH A 33 633 108 HOH HOH . V 5 HOH A 34 634 110 HOH HOH . V 5 HOH A 35 635 111 HOH HOH . V 5 HOH A 36 636 112 HOH HOH . V 5 HOH A 37 637 113 HOH HOH . V 5 HOH A 38 638 118 HOH HOH . V 5 HOH A 39 639 125 HOH HOH . V 5 HOH A 40 640 126 HOH HOH . V 5 HOH A 41 641 127 HOH HOH . V 5 HOH A 42 642 128 HOH HOH . V 5 HOH A 43 643 129 HOH HOH . V 5 HOH A 44 644 130 HOH HOH . V 5 HOH A 45 645 131 HOH HOH . V 5 HOH A 46 646 132 HOH HOH . V 5 HOH A 47 647 133 HOH HOH . V 5 HOH A 48 648 134 HOH HOH . V 5 HOH A 49 649 135 HOH HOH . V 5 HOH A 50 650 136 HOH HOH . V 5 HOH A 51 651 137 HOH HOH . V 5 HOH A 52 652 138 HOH HOH . V 5 HOH A 53 653 139 HOH HOH . V 5 HOH A 54 654 140 HOH HOH . V 5 HOH A 55 655 141 HOH HOH . V 5 HOH A 56 656 142 HOH HOH . V 5 HOH A 57 657 143 HOH HOH . V 5 HOH A 58 658 144 HOH HOH . V 5 HOH A 59 659 145 HOH HOH . V 5 HOH A 60 660 146 HOH HOH . V 5 HOH A 61 661 147 HOH HOH . V 5 HOH A 62 662 151 HOH HOH . V 5 HOH A 63 663 152 HOH HOH . V 5 HOH A 64 664 154 HOH HOH . V 5 HOH A 65 665 155 HOH HOH . V 5 HOH A 66 666 156 HOH HOH . V 5 HOH A 67 667 157 HOH HOH . V 5 HOH A 68 668 158 HOH HOH . V 5 HOH A 69 669 184 HOH HOH . V 5 HOH A 70 670 185 HOH HOH . V 5 HOH A 71 671 186 HOH HOH . V 5 HOH A 72 672 187 HOH HOH . V 5 HOH A 73 673 188 HOH HOH . V 5 HOH A 74 674 189 HOH HOH . V 5 HOH A 75 675 190 HOH HOH . V 5 HOH A 76 676 191 HOH HOH . V 5 HOH A 77 677 192 HOH HOH . W 5 HOH B 1 601 5 HOH HOH . W 5 HOH B 2 602 6 HOH HOH . W 5 HOH B 3 603 8 HOH HOH . W 5 HOH B 4 604 10 HOH HOH . W 5 HOH B 5 605 13 HOH HOH . W 5 HOH B 6 606 19 HOH HOH . W 5 HOH B 7 607 20 HOH HOH . W 5 HOH B 8 608 23 HOH HOH . W 5 HOH B 9 609 24 HOH HOH . W 5 HOH B 10 610 25 HOH HOH . W 5 HOH B 11 611 29 HOH HOH . W 5 HOH B 12 612 31 HOH HOH . W 5 HOH B 13 613 32 HOH HOH . W 5 HOH B 14 614 34 HOH HOH . W 5 HOH B 15 615 35 HOH HOH . W 5 HOH B 16 616 38 HOH HOH . W 5 HOH B 17 617 41 HOH HOH . W 5 HOH B 18 618 43 HOH HOH . W 5 HOH B 19 619 44 HOH HOH . W 5 HOH B 20 620 47 HOH HOH . W 5 HOH B 21 621 48 HOH HOH . W 5 HOH B 22 622 50 HOH HOH . W 5 HOH B 23 623 52 HOH HOH . W 5 HOH B 24 624 54 HOH HOH . W 5 HOH B 25 625 55 HOH HOH . W 5 HOH B 26 626 56 HOH HOH . W 5 HOH B 27 627 59 HOH HOH . W 5 HOH B 28 628 61 HOH HOH . W 5 HOH B 29 629 66 HOH HOH . W 5 HOH B 30 630 68 HOH HOH . W 5 HOH B 31 631 69 HOH HOH . W 5 HOH B 32 632 70 HOH HOH . W 5 HOH B 33 633 71 HOH HOH . W 5 HOH B 34 634 73 HOH HOH . W 5 HOH B 35 635 76 HOH HOH . W 5 HOH B 36 636 78 HOH HOH . W 5 HOH B 37 637 79 HOH HOH . W 5 HOH B 38 638 82 HOH HOH . W 5 HOH B 39 639 92 HOH HOH . W 5 HOH B 40 640 94 HOH HOH . W 5 HOH B 41 641 95 HOH HOH . W 5 HOH B 42 642 96 HOH HOH . W 5 HOH B 43 643 97 HOH HOH . W 5 HOH B 44 644 98 HOH HOH . W 5 HOH B 45 645 101 HOH HOH . W 5 HOH B 46 646 105 HOH HOH . W 5 HOH B 47 647 106 HOH HOH . W 5 HOH B 48 648 107 HOH HOH . W 5 HOH B 49 649 109 HOH HOH . W 5 HOH B 50 650 114 HOH HOH . W 5 HOH B 51 651 115 HOH HOH . W 5 HOH B 52 652 116 HOH HOH . W 5 HOH B 53 653 117 HOH HOH . W 5 HOH B 54 654 119 HOH HOH . W 5 HOH B 55 655 120 HOH HOH . W 5 HOH B 56 656 121 HOH HOH . W 5 HOH B 57 657 122 HOH HOH . W 5 HOH B 58 658 123 HOH HOH . W 5 HOH B 59 659 124 HOH HOH . W 5 HOH B 60 660 149 HOH HOH . W 5 HOH B 61 661 150 HOH HOH . W 5 HOH B 62 662 153 HOH HOH . W 5 HOH B 63 663 159 HOH HOH . W 5 HOH B 64 664 160 HOH HOH . W 5 HOH B 65 665 161 HOH HOH . W 5 HOH B 66 666 162 HOH HOH . W 5 HOH B 67 667 163 HOH HOH . W 5 HOH B 68 668 164 HOH HOH . W 5 HOH B 69 669 165 HOH HOH . W 5 HOH B 70 670 166 HOH HOH . W 5 HOH B 71 671 167 HOH HOH . W 5 HOH B 72 672 168 HOH HOH . W 5 HOH B 73 673 169 HOH HOH . W 5 HOH B 74 674 170 HOH HOH . W 5 HOH B 75 675 171 HOH HOH . W 5 HOH B 76 676 172 HOH HOH . W 5 HOH B 77 677 173 HOH HOH . W 5 HOH B 78 678 174 HOH HOH . W 5 HOH B 79 679 175 HOH HOH . W 5 HOH B 80 680 176 HOH HOH . W 5 HOH B 81 681 177 HOH HOH . W 5 HOH B 82 682 178 HOH HOH . W 5 HOH B 83 683 179 HOH HOH . W 5 HOH B 84 684 180 HOH HOH . W 5 HOH B 85 685 181 HOH HOH . W 5 HOH B 86 686 182 HOH HOH . W 5 HOH B 87 687 183 HOH HOH . W 5 HOH B 88 688 193 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . T 3 -9.257 -18.146 21.417 1 33.46 ? C1 EDO 508 B 1 HETATM 2 O O1 EDO . . . T 3 -8.252 -18.54 22.36 1 31.54 ? O1 EDO 508 B 1 HETATM 3 C C2 EDO . . . T 3 -9.129 -19.008 20.161 1 33.85 ? C2 EDO 508 B 1 HETATM 4 O O2 EDO . . . T 3 -8.288 -18.359 19.192 1 37.93 ? O2 EDO 508 B 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #