data_4MSV
#
_model_server_result.job_id            wRs4SbYohkvwbU3zRb2U2A 
_model_server_result.datetime_utc      '2024-10-12 19:23:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4msv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    4MSV 
#
_exptl.entry_id    4MSV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4MSV 
_cell.length_a            126.909 
_cell.length_b            126.909 
_cell.length_c            205.729 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4MSV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 20 B CYS 49 1_555 A SG CYS 33 B CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
disulf ? disulf2 A SG CYS 23 B CYS 52 1_555 A SG CYS 41 B CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
disulf ? disulf3 A SG CYS 44 B CYS 73 1_555 A SG CYS 59 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
disulf ? disulf4 A SG CYS 62 B CYS 91 1_555 A SG CYS 76 B CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
disulf ? disulf5 A SG CYS 66 B CYS 95 1_555 A SG CYS 84 B CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
disulf ? disulf6 A SG CYS 86 B CYS 115 1_555 A SG CYS 97 B CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
disulf ? disulf7 A SG CYS 103 B CYS 132 1_555 A SG CYS 121 B CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
disulf ? disulf8 A SG CYS 124 B CYS 153 1_555 A SG CYS 139 B CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? 
disulf ? disulf9 A SG CYS 145 B CYS 174 1_555 A SG CYS 164 B CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf10 B SG CYS 73 A CYS 202 1_555 B SG CYS 104 A CYS 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
metalc ? metalc1 A O CYS 103 B CYS 132 1_555 C MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? 
metalc ? metalc2 A O PRO 104 B PRO 133 1_555 C MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? 
metalc ? metalc3 A O ALA 107 B ALA 136 1_555 C MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc4 A OG SER 130 B SER 159 1_555 C MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? 
metalc ? metalc5 A O SER 132 B SER 161 1_555 C MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? 
metalc ? metalc6 C MG MG . B MG 301 1_555 E O HOH . B HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4MSV 
_atom_sites.fract_transf_matrix[1][1]    0.00788 
_atom_sites.fract_transf_matrix[1][2]    0.004549 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009099 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004861 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MG B 1 301 1 MG MG . 
D 4 GOL A 1 301 1 GOL GOL . 
E 5 HOH B 1 401 12 HOH HOH . 
E 5 HOH B 2 402 16 HOH HOH . 
E 5 HOH B 3 403 22 HOH HOH . 
E 5 HOH B 4 404 23 HOH HOH . 
E 5 HOH B 5 405 28 HOH HOH . 
E 5 HOH B 6 406 29 HOH HOH . 
E 5 HOH B 7 407 31 HOH HOH . 
E 5 HOH B 8 408 32 HOH HOH . 
E 5 HOH B 9 409 33 HOH HOH . 
E 5 HOH B 10 410 34 HOH HOH . 
E 5 HOH B 11 411 35 HOH HOH . 
E 5 HOH B 12 412 36 HOH HOH . 
E 5 HOH B 13 413 37 HOH HOH . 
E 5 HOH B 14 414 38 HOH HOH . 
E 5 HOH B 15 415 39 HOH HOH . 
E 5 HOH B 16 416 40 HOH HOH . 
E 5 HOH B 17 417 41 HOH HOH . 
E 5 HOH B 18 418 42 HOH HOH . 
E 5 HOH B 19 419 43 HOH HOH . 
E 5 HOH B 20 420 44 HOH HOH . 
E 5 HOH B 21 421 45 HOH HOH . 
E 5 HOH B 22 422 46 HOH HOH . 
E 5 HOH B 23 423 47 HOH HOH . 
E 5 HOH B 24 424 65 HOH HOH . 
E 5 HOH B 25 425 66 HOH HOH . 
E 5 HOH B 26 426 67 HOH HOH . 
E 5 HOH B 27 427 68 HOH HOH . 
E 5 HOH B 28 428 69 HOH HOH . 
F 5 HOH A 1 401 2 HOH HOH . 
F 5 HOH A 2 402 3 HOH HOH . 
F 5 HOH A 3 403 8 HOH HOH . 
F 5 HOH A 4 404 9 HOH HOH . 
F 5 HOH A 5 405 10 HOH HOH . 
F 5 HOH A 6 406 11 HOH HOH . 
F 5 HOH A 7 407 13 HOH HOH . 
F 5 HOH A 8 408 14 HOH HOH . 
F 5 HOH A 9 409 15 HOH HOH . 
F 5 HOH A 10 410 17 HOH HOH . 
F 5 HOH A 11 411 18 HOH HOH . 
F 5 HOH A 12 412 19 HOH HOH . 
F 5 HOH A 13 413 20 HOH HOH . 
F 5 HOH A 14 414 21 HOH HOH . 
F 5 HOH A 15 415 24 HOH HOH . 
F 5 HOH A 16 416 25 HOH HOH . 
F 5 HOH A 17 417 26 HOH HOH . 
F 5 HOH A 18 418 27 HOH HOH . 
F 5 HOH A 19 419 48 HOH HOH . 
F 5 HOH A 20 420 49 HOH HOH . 
F 5 HOH A 21 421 50 HOH HOH . 
F 5 HOH A 22 422 51 HOH HOH . 
F 5 HOH A 23 423 52 HOH HOH . 
F 5 HOH A 24 424 53 HOH HOH . 
F 5 HOH A 25 425 54 HOH HOH . 
F 5 HOH A 26 426 55 HOH HOH . 
F 5 HOH A 27 427 56 HOH HOH . 
F 5 HOH A 28 428 57 HOH HOH . 
F 5 HOH A 29 429 58 HOH HOH . 
F 5 HOH A 30 430 59 HOH HOH . 
F 5 HOH A 31 431 60 HOH HOH . 
F 5 HOH A 32 432 61 HOH HOH . 
F 5 HOH A 33 433 62 HOH HOH . 
F 5 HOH A 34 434 63 HOH HOH . 
F 5 HOH A 35 435 64 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 -23.539 -6.437 -50.577 1 42.48 ? C1 GOL 301 A 1 
HETATM 2 O O1 GOL . . . D 4 -24.25 -5.773 -49.459 1 39.93 ? O1 GOL 301 A 1 
HETATM 3 C C2 GOL . . . D 4 -22.771 -7.671 -50.136 1 40.04 ? C2 GOL 301 A 1 
HETATM 4 O O2 GOL . . . D 4 -22.115 -7.348 -48.869 1 34.94 ? O2 GOL 301 A 1 
HETATM 5 C C3 GOL . . . D 4 -21.857 -8.171 -51.26 1 38.54 ? C3 GOL 301 A 1 
HETATM 6 O O3 GOL . . . D 4 -21.718 -9.612 -51.063 1 43.6 ? O3 GOL 301 A 1 
#
_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#