data_4MT2 # _model_server_result.job_id Fo8bTVq9Tn4832U5jNUF2A _model_server_result.datetime_utc '2024-12-24 17:15:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mt2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":66}' # _entry.id 4MT2 # _exptl.entry_id 4MT2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4MT2 _cell.length_a 30.9 _cell.length_b 30.9 _cell.length_c 120.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MT2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 30.9 30.9 60.2 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? metalc ? metalc1 A SG CYS 6 A CYS 5 1_555 F CD CD . A CD 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc2 A SG CYS 8 A CYS 7 1_555 F CD CD . A CD 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc3 A SG CYS 8 A CYS 7 1_555 H ZN ZN . A ZN 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc4 A SG CYS 14 A CYS 13 1_555 H ZN ZN . A ZN 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc5 A SG CYS 16 A CYS 15 1_555 G ZN ZN . A ZN 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc6 A SG CYS 16 A CYS 15 1_555 H ZN ZN . A ZN 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc7 A SG CYS 20 A CYS 19 1_555 G ZN ZN . A ZN 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc8 A SG CYS 22 A CYS 21 1_555 F CD CD . A CD 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc9 A SG CYS 25 A CYS 24 1_555 F CD CD . A CD 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc10 A SG CYS 25 A CYS 24 1_555 G ZN ZN . A ZN 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc11 A SG CYS 27 A CYS 26 1_555 H ZN ZN . A ZN 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc12 A SG CYS 30 A CYS 29 1_555 G ZN ZN . A ZN 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc13 A O CYS 30 A CYS 29 1_555 I NA NA . A NA 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? metalc ? metalc14 A SG CYS 34 A CYS 33 1_555 C CD CD . A CD 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc15 A SG CYS 35 A CYS 34 1_555 C CD CD . A CD 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc16 A SG CYS 35 A CYS 34 1_555 E CD CD . A CD 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc17 A SG CYS 37 A CYS 36 1_555 E CD CD . A CD 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc18 A SG CYS 38 A CYS 37 1_555 D CD CD . A CD 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc19 A SG CYS 38 A CYS 37 1_555 E CD CD . A CD 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc20 A SG CYS 42 A CYS 41 1_555 D CD CD . A CD 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc21 A O ALA 43 A ALA 42 8_665 I NA NA . A NA 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc22 A SG CYS 45 A CYS 44 1_555 C CD CD . A CD 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc23 A SG CYS 45 A CYS 44 1_555 D CD CD . A CD 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc24 A SG CYS 49 A CYS 48 1_555 C CD CD . A CD 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc25 A SG CYS 51 A CYS 50 1_555 B CD CD . A CD 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc26 A SG CYS 51 A CYS 50 1_555 E CD CD . A CD 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc27 A SG CYS 58 A CYS 57 1_555 B CD CD . A CD 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc28 A SG CYS 60 A CYS 59 1_555 B CD CD . A CD 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc29 A SG CYS 61 A CYS 60 1_555 B CD CD . A CD 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc30 A SG CYS 61 A CYS 60 1_555 D CD CD . A CD 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc31 I NA NA . A NA 69 1_555 J O HOH . A HOH 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.754 ? metalc ? metalc32 I NA NA . A NA 69 1_555 J O HOH . A HOH 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc33 I NA NA . A NA 69 1_555 J O HOH . A HOH 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.708 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4MT2 _atom_sites.fract_transf_matrix[1][1] 0.032362 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.032362 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008306 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 62 62 CD CD . C 2 CD A 1 63 63 CD CD . D 2 CD A 1 64 64 CD CD . E 2 CD A 1 65 65 CD CD . F 2 CD A 1 66 66 CD CD . G 3 ZN A 1 67 67 ZN ZN . H 3 ZN A 1 68 68 ZN ZN . I 4 NA A 1 69 69 NA NA . J 5 HOH A 1 70 70 HOH HOH . J 5 HOH A 2 71 71 HOH HOH . J 5 HOH A 3 72 72 HOH HOH . J 5 HOH A 4 73 73 HOH HOH . J 5 HOH A 5 74 74 HOH HOH . J 5 HOH A 6 75 75 HOH HOH . J 5 HOH A 7 76 76 HOH HOH . J 5 HOH A 8 77 77 HOH HOH . J 5 HOH A 9 78 78 HOH HOH . J 5 HOH A 10 79 79 HOH HOH . J 5 HOH A 11 80 80 HOH HOH . J 5 HOH A 12 81 81 HOH HOH . J 5 HOH A 13 82 82 HOH HOH . J 5 HOH A 14 83 83 HOH HOH . J 5 HOH A 15 84 84 HOH HOH . J 5 HOH A 16 85 85 HOH HOH . J 5 HOH A 17 86 86 HOH HOH . J 5 HOH A 18 87 87 HOH HOH . J 5 HOH A 19 88 88 HOH HOH . J 5 HOH A 20 89 89 HOH HOH . J 5 HOH A 21 90 90 HOH HOH . J 5 HOH A 22 91 91 HOH HOH . J 5 HOH A 23 92 92 HOH HOH . J 5 HOH A 24 93 93 HOH HOH . J 5 HOH A 25 94 94 HOH HOH . J 5 HOH A 26 95 95 HOH HOH . J 5 HOH A 27 96 96 HOH HOH . J 5 HOH A 28 97 97 HOH HOH . J 5 HOH A 29 98 98 HOH HOH . J 5 HOH A 30 99 99 HOH HOH . J 5 HOH A 31 100 100 HOH HOH . J 5 HOH A 32 101 101 HOH HOH . J 5 HOH A 33 102 102 HOH HOH . J 5 HOH A 34 103 103 HOH HOH . J 5 HOH A 35 104 104 HOH HOH . J 5 HOH A 36 105 105 HOH HOH . J 5 HOH A 37 106 106 HOH HOH . J 5 HOH A 38 107 107 HOH HOH . J 5 HOH A 39 108 108 HOH HOH . J 5 HOH A 40 110 110 HOH HOH . J 5 HOH A 41 111 111 HOH HOH . J 5 HOH A 42 112 112 HOH HOH . J 5 HOH A 43 113 113 HOH HOH . J 5 HOH A 44 114 114 HOH HOH . J 5 HOH A 45 115 115 HOH HOH . J 5 HOH A 46 116 116 HOH HOH . J 5 HOH A 47 117 117 HOH HOH . J 5 HOH A 48 118 118 HOH HOH . J 5 HOH A 49 119 119 HOH HOH . J 5 HOH A 50 120 120 HOH HOH . J 5 HOH A 51 122 122 HOH HOH . J 5 HOH A 52 123 123 HOH HOH . J 5 HOH A 53 124 124 HOH HOH . J 5 HOH A 54 125 125 HOH HOH . J 5 HOH A 55 126 126 HOH HOH . J 5 HOH A 56 127 127 HOH HOH . J 5 HOH A 57 128 128 HOH HOH . J 5 HOH A 58 129 129 HOH HOH . J 5 HOH A 59 130 130 HOH HOH . J 5 HOH A 60 131 131 HOH HOH . J 5 HOH A 61 132 132 HOH HOH . J 5 HOH A 62 133 133 HOH HOH . J 5 HOH A 63 134 134 HOH HOH . J 5 HOH A 64 135 135 HOH HOH . J 5 HOH A 65 136 136 HOH HOH . J 5 HOH A 66 137 137 HOH HOH . J 5 HOH A 67 138 138 HOH HOH . J 5 HOH A 68 139 139 HOH HOH . J 5 HOH A 69 199 199 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 17.596 _atom_site.Cartn_y 13.044 _atom_site.Cartn_z 46.207 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.93 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 66 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #