data_4MUU # _model_server_result.job_id aD60hke7KRKXqpDCAT1FDg _model_server_result.datetime_utc '2024-11-05 04:58:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4muu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AA","auth_seq_id":203}' # _entry.id 4MUU # _exptl.entry_id 4MUU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.395 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'nonyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.61 _cell.angle_gamma 90 _cell.entry_id 4MUU _cell.length_a 61.56 _cell.length_b 84.59 _cell.length_c 127.26 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MUU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,RA 1 1 B,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,SA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 Z N N ? 3 AA N N # _chem_comp.formula 'C15 H30 O6' _chem_comp.formula_weight 306.395 _chem_comp.id BNG _chem_comp.mon_nstd_flag n _chem_comp.name 'nonyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-NONYLGLUCOSIDE;nonyl beta-D-glucoside;nonyl D-glucoside;nonyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BNG sing 131 n n C1 O1 BNG sing 132 n n C1 O5 BNG sing 133 n n C1 H1 BNG sing 134 n n C2 C3 BNG sing 135 n n C2 O2 BNG sing 136 n n C2 H2 BNG sing 137 n n C3 C4 BNG sing 138 n n C3 O3 BNG sing 139 n n C3 H3 BNG sing 140 n n C4 C5 BNG sing 141 n n C4 O4 BNG sing 142 n n C4 H4 BNG sing 143 n n C5 C6 BNG sing 144 n n C5 O5 BNG sing 145 n n C5 H5 BNG sing 146 n n C6 O6 BNG sing 147 n n C6 H61 BNG sing 148 n n C6 H62 BNG sing 149 n n C1' C2' BNG sing 150 n n C1' O1 BNG sing 151 n n C1' "H1'1" BNG sing 152 n n C1' "H1'2" BNG sing 153 n n C2' C3' BNG sing 154 n n C2' "H2'1" BNG sing 155 n n C2' "H2'2" BNG sing 156 n n C3' C4' BNG sing 157 n n C3' "H3'1" BNG sing 158 n n C3' "H3'2" BNG sing 159 n n C4' C5' BNG sing 160 n n C4' "H4'1" BNG sing 161 n n C4' "H4'2" BNG sing 162 n n C5' C6' BNG sing 163 n n C5' "H5'1" BNG sing 164 n n C5' "H5'2" BNG sing 165 n n C6' C7' BNG sing 166 n n C6' "H6'1" BNG sing 167 n n C6' "H6'2" BNG sing 168 n n C7' C8' BNG sing 169 n n C7' "H7'1" BNG sing 170 n n C7' "H7'2" BNG sing 171 n n C8' C9' BNG sing 172 n n C8' "H8'1" BNG sing 173 n n C8' "H8'2" BNG sing 174 n n C9' "H9'1" BNG sing 175 n n C9' "H9'2" BNG sing 176 n n C9' "H9'3" BNG sing 177 n n O2 HO2 BNG sing 178 n n O3 HO3 BNG sing 179 n n O4 HO4 BNG sing 180 n n O6 HO6 BNG sing 181 n n # _pdbx_chem_comp_identifier.comp_id BNG _pdbx_chem_comp_identifier.identifier b-nonylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 4MUU _atom_sites.fract_transf_matrix[1][1] 0.016244 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001595 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011822 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007896 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 218 A 1 201 1 218 PXJ . D 3 BNG A 1 202 3 BNG BNG . E 4 PEG A 1 203 9 PEG PEG . F 4 PEG A 1 204 11 PEG PEG . G 4 PEG A 1 205 12 PEG PEG . H 4 PEG A 1 206 14 PEG PEG . I 4 PEG A 1 207 15 PEG PEG . J 4 PEG A 1 208 17 PEG PEG . K 4 PEG A 1 209 18 PEG PEG . L 5 PG0 A 1 210 5 PG0 PG0 . M 5 PG0 A 1 211 6 PG0 PG0 . N 5 PG0 A 1 212 8 PG0 PG0 . O 5 PG0 A 1 213 9 PG0 PG0 . P 5 PG0 A 1 214 11 PG0 PG0 . Q 5 PG0 A 1 215 12 PG0 PG0 . R 6 PG4 A 1 216 3 PG4 PG4 . S 6 PG4 A 1 217 4 PG4 PG4 . T 6 PG4 A 1 218 5 PG4 PG4 . U 6 PG4 A 1 219 8 PG4 PG4 . V 6 PG4 A 1 220 10 PG4 PG4 . W 7 1PE A 1 221 3 1PE 1PE . X 8 PGE A 1 222 2 PGE PGE . Y 2 218 B 1 201 2 218 PXJ . Z 3 BNG B 1 202 1 BNG BNG . AA 3 BNG B 1 203 4 BNG BNG . BA 4 PEG B 1 204 13 PEG PEG . CA 4 PEG B 1 205 20 PEG PEG . DA 4 PEG B 1 206 21 PEG PEG . EA 9 P6G B 1 207 3 P6G P6G . FA 9 P6G B 1 208 4 P6G P6G . GA 9 P6G B 1 209 5 P6G P6G . HA 9 P6G B 1 210 6 P6G P6G . IA 5 PG0 B 1 211 7 PG0 PG0 . JA 5 PG0 B 1 212 13 PG0 PG0 . KA 6 PG4 B 1 213 2 PG4 PG4 . LA 6 PG4 B 1 214 9 PG4 PG4 . MA 6 PG4 B 1 215 11 PG4 PG4 . NA 6 PG4 B 1 216 12 PG4 PG4 . OA 10 PE5 B 1 217 1 PE5 PE5 . PA 8 PGE B 1 218 1 PGE PGE . QA 8 PGE B 1 219 3 PGE PGE . RA 11 HOH A 1 301 2 HOH HOH . RA 11 HOH A 2 302 3 HOH HOH . RA 11 HOH A 3 303 7 HOH HOH . RA 11 HOH A 4 304 9 HOH HOH . RA 11 HOH A 5 305 10 HOH HOH . RA 11 HOH A 6 306 11 HOH HOH . RA 11 HOH A 7 307 12 HOH HOH . RA 11 HOH A 8 308 13 HOH HOH . RA 11 HOH A 9 309 16 HOH HOH . RA 11 HOH A 10 310 20 HOH HOH . RA 11 HOH A 11 311 21 HOH HOH . RA 11 HOH A 12 312 22 HOH HOH . RA 11 HOH A 13 313 25 HOH HOH . RA 11 HOH A 14 314 27 HOH HOH . RA 11 HOH A 15 315 29 HOH HOH . RA 11 HOH A 16 316 36 HOH HOH . RA 11 HOH A 17 317 37 HOH HOH . RA 11 HOH A 18 318 38 HOH HOH . RA 11 HOH A 19 319 39 HOH HOH . RA 11 HOH A 20 320 42 HOH HOH . RA 11 HOH A 21 321 43 HOH HOH . RA 11 HOH A 22 322 44 HOH HOH . RA 11 HOH A 23 323 45 HOH HOH . RA 11 HOH A 24 324 50 HOH HOH . RA 11 HOH A 25 325 51 HOH HOH . RA 11 HOH A 26 326 58 HOH HOH . RA 11 HOH A 27 327 60 HOH HOH . RA 11 HOH A 28 328 63 HOH HOH . RA 11 HOH A 29 329 65 HOH HOH . RA 11 HOH A 30 330 69 HOH HOH . RA 11 HOH A 31 331 71 HOH HOH . RA 11 HOH A 32 332 73 HOH HOH . RA 11 HOH A 33 333 75 HOH HOH . RA 11 HOH A 34 334 84 HOH HOH . RA 11 HOH A 35 335 86 HOH HOH . RA 11 HOH A 36 336 95 HOH HOH . RA 11 HOH A 37 337 96 HOH HOH . RA 11 HOH A 38 338 101 HOH HOH . RA 11 HOH A 39 339 103 HOH HOH . RA 11 HOH A 40 340 105 HOH HOH . RA 11 HOH A 41 341 106 HOH HOH . RA 11 HOH A 42 342 108 HOH HOH . RA 11 HOH A 43 343 111 HOH HOH . RA 11 HOH A 44 344 116 HOH HOH . RA 11 HOH A 45 345 131 HOH HOH . RA 11 HOH A 46 346 147 HOH HOH . RA 11 HOH A 47 347 153 HOH HOH . RA 11 HOH A 48 348 154 HOH HOH . RA 11 HOH A 49 349 155 HOH HOH . RA 11 HOH A 50 350 158 HOH HOH . RA 11 HOH A 51 351 159 HOH HOH . RA 11 HOH A 52 352 171 HOH HOH . RA 11 HOH A 53 353 177 HOH HOH . RA 11 HOH A 54 354 195 HOH HOH . RA 11 HOH A 55 355 196 HOH HOH . RA 11 HOH A 56 356 197 HOH HOH . RA 11 HOH A 57 357 202 HOH HOH . SA 11 HOH B 1 301 1 HOH HOH . SA 11 HOH B 2 302 4 HOH HOH . SA 11 HOH B 3 303 5 HOH HOH . SA 11 HOH B 4 304 8 HOH HOH . SA 11 HOH B 5 305 14 HOH HOH . SA 11 HOH B 6 306 15 HOH HOH . SA 11 HOH B 7 307 17 HOH HOH . SA 11 HOH B 8 308 18 HOH HOH . SA 11 HOH B 9 309 19 HOH HOH . SA 11 HOH B 10 310 23 HOH HOH . SA 11 HOH B 11 311 24 HOH HOH . SA 11 HOH B 12 312 26 HOH HOH . SA 11 HOH B 13 313 28 HOH HOH . SA 11 HOH B 14 314 33 HOH HOH . SA 11 HOH B 15 315 34 HOH HOH . SA 11 HOH B 16 316 35 HOH HOH . SA 11 HOH B 17 317 41 HOH HOH . SA 11 HOH B 18 318 46 HOH HOH . SA 11 HOH B 19 319 47 HOH HOH . SA 11 HOH B 20 320 48 HOH HOH . SA 11 HOH B 21 321 49 HOH HOH . SA 11 HOH B 22 322 52 HOH HOH . SA 11 HOH B 23 323 53 HOH HOH . SA 11 HOH B 24 324 54 HOH HOH . SA 11 HOH B 25 325 59 HOH HOH . SA 11 HOH B 26 326 61 HOH HOH . SA 11 HOH B 27 327 62 HOH HOH . SA 11 HOH B 28 328 67 HOH HOH . SA 11 HOH B 29 329 68 HOH HOH . SA 11 HOH B 30 330 74 HOH HOH . SA 11 HOH B 31 331 77 HOH HOH . SA 11 HOH B 32 332 78 HOH HOH . SA 11 HOH B 33 333 80 HOH HOH . SA 11 HOH B 34 334 81 HOH HOH . SA 11 HOH B 35 335 83 HOH HOH . SA 11 HOH B 36 336 91 HOH HOH . SA 11 HOH B 37 337 92 HOH HOH . SA 11 HOH B 38 338 121 HOH HOH . SA 11 HOH B 39 339 124 HOH HOH . SA 11 HOH B 40 340 133 HOH HOH . SA 11 HOH B 41 341 160 HOH HOH . SA 11 HOH B 42 342 162 HOH HOH . SA 11 HOH B 43 343 166 HOH HOH . SA 11 HOH B 44 344 167 HOH HOH . SA 11 HOH B 45 345 169 HOH HOH . SA 11 HOH B 46 346 173 HOH HOH . SA 11 HOH B 47 347 180 HOH HOH . SA 11 HOH B 48 348 182 HOH HOH . SA 11 HOH B 49 349 189 HOH HOH . SA 11 HOH B 50 350 190 HOH HOH . SA 11 HOH B 51 351 199 HOH HOH . SA 11 HOH B 52 352 201 HOH HOH . SA 11 HOH B 53 353 203 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BNG . . . AA 3 18.773 13.129 29.61 1 80.69 ? C1 BNG 203 B 1 HETATM 2 C C2 BNG . . . AA 3 19.623 12.301 28.643 1 70.64 ? C2 BNG 203 B 1 HETATM 3 C C3 BNG . . . AA 3 19.531 12.749 27.199 1 64.94 ? C3 BNG 203 B 1 HETATM 4 C C4 BNG . . . AA 3 18.152 13.216 26.855 1 77.7 ? C4 BNG 203 B 1 HETATM 5 C C5 BNG . . . AA 3 17.711 14.207 27.911 1 80.67 ? C5 BNG 203 B 1 HETATM 6 C C6 BNG . . . AA 3 16.35 14.74 27.575 1 82.48 ? C6 BNG 203 B 1 HETATM 7 C C1' BNG . . . AA 3 18.102 13.146 31.958 1 75.31 ? C1' BNG 203 B 1 HETATM 8 C C2' BNG . . . AA 3 16.663 13.659 31.76 1 70.78 ? C2' BNG 203 B 1 HETATM 9 C C3' BNG . . . AA 3 16.49 15.048 32.526 1 59.92 ? C3' BNG 203 B 1 HETATM 10 C C4' BNG . . . AA 3 15.291 15.839 31.951 1 60.81 ? C4' BNG 203 B 1 HETATM 11 C C5' BNG . . . AA 3 15.778 16.813 30.845 1 63.15 ? C5' BNG 203 B 1 HETATM 12 C C6' BNG . . . AA 3 16.88 17.746 31.397 1 54.06 ? C6' BNG 203 B 1 HETATM 13 C C7' BNG . . . AA 3 16.587 19.217 31.041 1 51.21 ? C7' BNG 203 B 1 HETATM 14 C C8' BNG . . . AA 3 17.541 19.66 29.936 1 54.05 ? C8' BNG 203 B 1 HETATM 15 C C9' BNG . . . AA 3 18.475 18.515 29.609 1 46.66 ? C9' BNG 203 B 1 HETATM 16 O O1 BNG . . . AA 3 18.541 12.383 30.808 1 81.99 ? O1 BNG 203 B 1 HETATM 17 O O2 BNG . . . AA 3 20.971 12.383 29.004 1 67.28 ? O2 BNG 203 B 1 HETATM 18 O O3 BNG . . . AA 3 19.799 11.659 26.356 1 67.65 ? O3 BNG 203 B 1 HETATM 19 O O4 BNG . . . AA 3 18.239 13.814 25.596 1 90.06 ? O4 BNG 203 B 1 HETATM 20 O O5 BNG . . . AA 3 17.538 13.459 29.077 1 85.37 ? O5 BNG 203 B 1 HETATM 21 O O6 BNG . . . AA 3 15.489 14.37 28.643 1 81.7 ? O6 BNG 203 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #