data_4MV1 # _model_server_result.job_id dkfeO3EnJV0n9V7qT2Pztw _model_server_result.datetime_utc '2025-01-11 02:12:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mv1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 4MV1 # _exptl.entry_id 4MV1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4MV1 _cell.length_a 85.733 _cell.length_b 85.733 _cell.length_c 103.042 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MV1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1,2 A,B,C,D,E,F 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 -42.8665 74.246956 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 4MV1 _atom_sites.fract_transf_matrix[1][1] 0.011664 _atom_sites.fract_transf_matrix[1][2] 0.006734 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013469 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009705 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 501 1 PO4 PO4 . C 3 ADP A 1 502 1 ADP ADP . D 4 EDO A 1 503 1 EDO EDO . E 4 EDO A 1 504 2 EDO EDO . F 5 HOH A 1 601 1 HOH HOH . F 5 HOH A 2 602 2 HOH HOH . F 5 HOH A 3 603 3 HOH HOH . F 5 HOH A 4 604 4 HOH HOH . F 5 HOH A 5 605 5 HOH HOH . F 5 HOH A 6 606 6 HOH HOH . F 5 HOH A 7 607 7 HOH HOH . F 5 HOH A 8 608 8 HOH HOH . F 5 HOH A 9 609 9 HOH HOH . F 5 HOH A 10 610 10 HOH HOH . F 5 HOH A 11 611 11 HOH HOH . F 5 HOH A 12 612 12 HOH HOH . F 5 HOH A 13 613 13 HOH HOH . F 5 HOH A 14 614 14 HOH HOH . F 5 HOH A 15 615 15 HOH HOH . F 5 HOH A 16 616 16 HOH HOH . F 5 HOH A 17 617 17 HOH HOH . F 5 HOH A 18 618 18 HOH HOH . F 5 HOH A 19 619 19 HOH HOH . F 5 HOH A 20 620 20 HOH HOH . F 5 HOH A 21 621 21 HOH HOH . F 5 HOH A 22 622 22 HOH HOH . F 5 HOH A 23 623 23 HOH HOH . F 5 HOH A 24 624 24 HOH HOH . F 5 HOH A 25 625 25 HOH HOH . F 5 HOH A 26 626 26 HOH HOH . F 5 HOH A 27 627 27 HOH HOH . F 5 HOH A 28 628 28 HOH HOH . F 5 HOH A 29 629 29 HOH HOH . F 5 HOH A 30 630 30 HOH HOH . F 5 HOH A 31 631 31 HOH HOH . F 5 HOH A 32 632 32 HOH HOH . F 5 HOH A 33 633 33 HOH HOH . F 5 HOH A 34 634 34 HOH HOH . F 5 HOH A 35 635 35 HOH HOH . F 5 HOH A 36 636 36 HOH HOH . F 5 HOH A 37 637 37 HOH HOH . F 5 HOH A 38 638 38 HOH HOH . F 5 HOH A 39 639 39 HOH HOH . F 5 HOH A 40 640 40 HOH HOH . F 5 HOH A 41 641 41 HOH HOH . F 5 HOH A 42 642 42 HOH HOH . F 5 HOH A 43 643 43 HOH HOH . F 5 HOH A 44 644 44 HOH HOH . F 5 HOH A 45 645 45 HOH HOH . F 5 HOH A 46 646 46 HOH HOH . F 5 HOH A 47 647 47 HOH HOH . F 5 HOH A 48 648 48 HOH HOH . F 5 HOH A 49 649 49 HOH HOH . F 5 HOH A 50 650 50 HOH HOH . F 5 HOH A 51 651 51 HOH HOH . F 5 HOH A 52 652 52 HOH HOH . F 5 HOH A 53 653 53 HOH HOH . F 5 HOH A 54 654 54 HOH HOH . F 5 HOH A 55 655 55 HOH HOH . F 5 HOH A 56 656 56 HOH HOH . F 5 HOH A 57 657 57 HOH HOH . F 5 HOH A 58 658 58 HOH HOH . F 5 HOH A 59 659 59 HOH HOH . F 5 HOH A 60 660 60 HOH HOH . F 5 HOH A 61 661 61 HOH HOH . F 5 HOH A 62 662 62 HOH HOH . F 5 HOH A 63 663 64 HOH HOH . F 5 HOH A 64 664 65 HOH HOH . F 5 HOH A 65 665 66 HOH HOH . F 5 HOH A 66 666 67 HOH HOH . F 5 HOH A 67 667 68 HOH HOH . F 5 HOH A 68 668 69 HOH HOH . F 5 HOH A 69 669 70 HOH HOH . F 5 HOH A 70 670 71 HOH HOH . F 5 HOH A 71 671 72 HOH HOH . F 5 HOH A 72 672 73 HOH HOH . F 5 HOH A 73 673 74 HOH HOH . F 5 HOH A 74 674 75 HOH HOH . F 5 HOH A 75 675 76 HOH HOH . F 5 HOH A 76 676 77 HOH HOH . F 5 HOH A 77 677 78 HOH HOH . F 5 HOH A 78 678 79 HOH HOH . F 5 HOH A 79 679 80 HOH HOH . F 5 HOH A 80 680 81 HOH HOH . F 5 HOH A 81 681 82 HOH HOH . F 5 HOH A 82 682 83 HOH HOH . F 5 HOH A 83 683 84 HOH HOH . F 5 HOH A 84 684 85 HOH HOH . F 5 HOH A 85 685 86 HOH HOH . F 5 HOH A 86 686 87 HOH HOH . F 5 HOH A 87 687 88 HOH HOH . F 5 HOH A 88 688 89 HOH HOH . F 5 HOH A 89 689 90 HOH HOH . F 5 HOH A 90 690 91 HOH HOH . F 5 HOH A 91 691 92 HOH HOH . F 5 HOH A 92 692 93 HOH HOH . F 5 HOH A 93 693 94 HOH HOH . F 5 HOH A 94 694 96 HOH HOH . F 5 HOH A 95 695 97 HOH HOH . F 5 HOH A 96 696 98 HOH HOH . F 5 HOH A 97 697 99 HOH HOH . F 5 HOH A 98 698 100 HOH HOH . F 5 HOH A 99 699 101 HOH HOH . F 5 HOH A 100 700 102 HOH HOH . F 5 HOH A 101 701 104 HOH HOH . F 5 HOH A 102 702 105 HOH HOH . F 5 HOH A 103 703 106 HOH HOH . F 5 HOH A 104 704 107 HOH HOH . F 5 HOH A 105 705 108 HOH HOH . F 5 HOH A 106 706 109 HOH HOH . F 5 HOH A 107 707 110 HOH HOH . F 5 HOH A 108 708 111 HOH HOH . F 5 HOH A 109 709 112 HOH HOH . F 5 HOH A 110 710 113 HOH HOH . F 5 HOH A 111 711 114 HOH HOH . F 5 HOH A 112 712 115 HOH HOH . F 5 HOH A 113 713 116 HOH HOH . F 5 HOH A 114 714 117 HOH HOH . F 5 HOH A 115 715 118 HOH HOH . F 5 HOH A 116 716 119 HOH HOH . F 5 HOH A 117 717 121 HOH HOH . F 5 HOH A 118 718 122 HOH HOH . F 5 HOH A 119 719 123 HOH HOH . F 5 HOH A 120 720 124 HOH HOH . F 5 HOH A 121 721 125 HOH HOH . F 5 HOH A 122 722 126 HOH HOH . F 5 HOH A 123 723 127 HOH HOH . F 5 HOH A 124 724 128 HOH HOH . F 5 HOH A 125 725 129 HOH HOH . F 5 HOH A 126 726 130 HOH HOH . F 5 HOH A 127 727 131 HOH HOH . F 5 HOH A 128 728 132 HOH HOH . F 5 HOH A 129 729 133 HOH HOH . F 5 HOH A 130 730 134 HOH HOH . F 5 HOH A 131 731 135 HOH HOH . F 5 HOH A 132 732 136 HOH HOH . F 5 HOH A 133 733 137 HOH HOH . F 5 HOH A 134 734 138 HOH HOH . F 5 HOH A 135 735 139 HOH HOH . F 5 HOH A 136 736 140 HOH HOH . F 5 HOH A 137 737 141 HOH HOH . F 5 HOH A 138 738 142 HOH HOH . F 5 HOH A 139 739 143 HOH HOH . F 5 HOH A 140 740 144 HOH HOH . F 5 HOH A 141 741 145 HOH HOH . F 5 HOH A 142 742 146 HOH HOH . F 5 HOH A 143 743 147 HOH HOH . F 5 HOH A 144 744 148 HOH HOH . F 5 HOH A 145 745 149 HOH HOH . F 5 HOH A 146 746 150 HOH HOH . F 5 HOH A 147 747 151 HOH HOH . F 5 HOH A 148 748 152 HOH HOH . F 5 HOH A 149 749 153 HOH HOH . F 5 HOH A 150 750 154 HOH HOH . F 5 HOH A 151 751 155 HOH HOH . F 5 HOH A 152 752 156 HOH HOH . F 5 HOH A 153 753 157 HOH HOH . F 5 HOH A 154 754 158 HOH HOH . F 5 HOH A 155 755 159 HOH HOH . F 5 HOH A 156 756 160 HOH HOH . F 5 HOH A 157 757 161 HOH HOH . F 5 HOH A 158 758 162 HOH HOH . F 5 HOH A 159 759 163 HOH HOH . F 5 HOH A 160 760 164 HOH HOH . F 5 HOH A 161 761 165 HOH HOH . F 5 HOH A 162 762 166 HOH HOH . F 5 HOH A 163 763 167 HOH HOH . F 5 HOH A 164 764 168 HOH HOH . F 5 HOH A 165 765 169 HOH HOH . F 5 HOH A 166 766 170 HOH HOH . F 5 HOH A 167 767 171 HOH HOH . F 5 HOH A 168 768 172 HOH HOH . F 5 HOH A 169 769 173 HOH HOH . F 5 HOH A 170 770 174 HOH HOH . F 5 HOH A 171 771 175 HOH HOH . F 5 HOH A 172 772 176 HOH HOH . F 5 HOH A 173 773 177 HOH HOH . F 5 HOH A 174 774 178 HOH HOH . F 5 HOH A 175 775 179 HOH HOH . F 5 HOH A 176 776 180 HOH HOH . F 5 HOH A 177 777 181 HOH HOH . F 5 HOH A 178 778 182 HOH HOH . F 5 HOH A 179 779 183 HOH HOH . F 5 HOH A 180 780 184 HOH HOH . F 5 HOH A 181 781 185 HOH HOH . F 5 HOH A 182 782 186 HOH HOH . F 5 HOH A 183 783 187 HOH HOH . F 5 HOH A 184 784 188 HOH HOH . F 5 HOH A 185 785 189 HOH HOH . F 5 HOH A 186 786 190 HOH HOH . F 5 HOH A 187 787 191 HOH HOH . F 5 HOH A 188 788 192 HOH HOH . F 5 HOH A 189 789 193 HOH HOH . F 5 HOH A 190 790 194 HOH HOH . F 5 HOH A 191 791 195 HOH HOH . F 5 HOH A 192 792 196 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 3 -23.255 7.26 -15.244 1 113.76 ? PB ADP 502 A 1 HETATM 2 O O1B ADP . . . C 3 -21.875 6.984 -15.795 1 115.05 ? O1B ADP 502 A 1 HETATM 3 O O2B ADP . . . C 3 -23.634 8.722 -15.254 1 112.86 ? O2B ADP 502 A 1 HETATM 4 O O3B ADP . . . C 3 -23.566 6.573 -13.93 1 112.64 ? O3B ADP 502 A 1 HETATM 5 P PA ADP . . . C 3 -24.547 4.996 -16.421 1 113.38 ? PA ADP 502 A 1 HETATM 6 O O1A ADP . . . C 3 -24.446 4.592 -17.88 1 113.75 ? O1A ADP 502 A 1 HETATM 7 O O2A ADP . . . C 3 -23.705 4.325 -15.363 1 112.65 ? O2A ADP 502 A 1 HETATM 8 O O3A ADP . . . C 3 -24.276 6.592 -16.311 1 111.68 ? O3A ADP 502 A 1 HETATM 9 O O5' ADP . . . C 3 -26.101 4.89 -15.967 1 73.19 ? O5' ADP 502 A 1 HETATM 10 C C5' ADP . . . C 3 -26.545 5.52 -14.762 1 70.49 ? C5' ADP 502 A 1 HETATM 11 C C4' ADP . . . C 3 -28.062 5.625 -14.771 1 66.69 ? C4' ADP 502 A 1 HETATM 12 O O4' ADP . . . C 3 -28.643 4.334 -14.53 1 63.88 ? O4' ADP 502 A 1 HETATM 13 C C3' ADP . . . C 3 -28.618 6.552 -13.69 1 64.45 ? C3' ADP 502 A 1 HETATM 14 O O3' ADP . . . C 3 -28.735 7.916 -14.082 1 65.44 ? O3' ADP 502 A 1 HETATM 15 C C2' ADP . . . C 3 -29.99 5.978 -13.426 1 61.9 ? C2' ADP 502 A 1 HETATM 16 O O2' ADP . . . C 3 -30.985 6.528 -14.29 1 59.58 ? O2' ADP 502 A 1 HETATM 17 C C1' ADP . . . C 3 -29.826 4.503 -13.724 1 62.53 ? C1' ADP 502 A 1 HETATM 18 N N9 ADP . . . C 3 -29.719 3.888 -12.382 1 61.57 ? N9 ADP 502 A 1 HETATM 19 C C8 ADP . . . C 3 -28.592 3.454 -11.792 1 61.5 ? C8 ADP 502 A 1 HETATM 20 N N7 ADP . . . C 3 -28.866 2.966 -10.557 1 60.42 ? N7 ADP 502 A 1 HETATM 21 C C5 ADP . . . C 3 -30.185 3.101 -10.349 1 58.5 ? C5 ADP 502 A 1 HETATM 22 C C6 ADP . . . C 3 -31.13 2.788 -9.258 1 56.4 ? C6 ADP 502 A 1 HETATM 23 N N6 ADP . . . C 3 -30.686 2.216 -8.116 1 54.35 ? N6 ADP 502 A 1 HETATM 24 N N1 ADP . . . C 3 -32.436 3.086 -9.44 1 56.56 ? N1 ADP 502 A 1 HETATM 25 C C2 ADP . . . C 3 -32.886 3.656 -10.573 1 57.43 ? C2 ADP 502 A 1 HETATM 26 N N3 ADP . . . C 3 -32.075 3.969 -11.599 1 58.37 ? N3 ADP 502 A 1 HETATM 27 C C4 ADP . . . C 3 -30.745 3.716 -11.551 1 59.56 ? C4 ADP 502 A 1 HETATM 28 H "H5'1" ADP . . . C 3 -26.106 6.516 -14.682 1 84.59 ? "H5'1" ADP 502 A 1 HETATM 29 H "H5'2" ADP . . . C 3 -26.22 4.934 -13.898 1 84.59 ? "H5'2" ADP 502 A 1 HETATM 30 H H4' ADP . . . C 3 -28.382 5.999 -15.753 1 80.03 ? H4' ADP 502 A 1 HETATM 31 H H3' ADP . . . C 3 -28.006 6.462 -12.782 1 77.34 ? H3' ADP 502 A 1 HETATM 32 H HO3' ADP . . . C 3 -29.093 8.433 -13.347 1 78.53 ? HO3' ADP 502 A 1 HETATM 33 H H2' ADP . . . C 3 -30.258 6.118 -12.37 1 74.28 ? H2' ADP 502 A 1 HETATM 34 H HO2' ADP . . . C 3 -31.047 7.482 -14.143 1 71.5 ? HO2' ADP 502 A 1 HETATM 35 H H1' ADP . . . C 3 -30.715 4.133 -14.253 1 75.04 ? H1' ADP 502 A 1 HETATM 36 H H8 ADP . . . C 3 -27.608 3.479 -12.243 1 73.8 ? H8 ADP 502 A 1 HETATM 37 H HN61 ADP . . . C 3 -31.335 2.004 -7.372 1 65.21 ? HN61 ADP 502 A 1 HETATM 38 H HN62 ADP . . . C 3 -29.705 2.001 -8.007 1 65.21 ? HN62 ADP 502 A 1 HETATM 39 H H2 ADP . . . C 3 -33.943 3.875 -10.66 1 68.91 ? H2 ADP 502 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 39 #