data_4MV1
#
_model_server_result.job_id            DxD9IvM2TsiGDUCyuTod1Q 
_model_server_result.datetime_utc      '2024-11-05 00:53:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4mv1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
#
_entry.id    4MV1 
#
_exptl.entry_id    4MV1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4MV1 
_cell.length_a            85.733 
_cell.length_b            85.733 
_cell.length_c            103.042 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4MV1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        172 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 64' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1,2 
A,B,C,D,E,F 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 -42.8665 74.246956 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 127 n n 
C1 C2 EDO sing 128 n n 
C1 H11 EDO sing 129 n n 
C1 H12 EDO sing 130 n n 
O1 HO1 EDO sing 131 n n 
C2 O2 EDO sing 132 n n 
C2 H21 EDO sing 133 n n 
C2 H22 EDO sing 134 n n 
O2 HO2 EDO sing 135 n n 
#
_atom_sites.entry_id                     4MV1 
_atom_sites.fract_transf_matrix[1][1]    0.011664 
_atom_sites.fract_transf_matrix[1][2]    0.006734 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013469 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009705 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 501 1 PO4 PO4 . 
C 3 ADP A 1 502 1 ADP ADP . 
D 4 EDO A 1 503 1 EDO EDO . 
E 4 EDO A 1 504 2 EDO EDO . 
F 5 HOH A 1 601 1 HOH HOH . 
F 5 HOH A 2 602 2 HOH HOH . 
F 5 HOH A 3 603 3 HOH HOH . 
F 5 HOH A 4 604 4 HOH HOH . 
F 5 HOH A 5 605 5 HOH HOH . 
F 5 HOH A 6 606 6 HOH HOH . 
F 5 HOH A 7 607 7 HOH HOH . 
F 5 HOH A 8 608 8 HOH HOH . 
F 5 HOH A 9 609 9 HOH HOH . 
F 5 HOH A 10 610 10 HOH HOH . 
F 5 HOH A 11 611 11 HOH HOH . 
F 5 HOH A 12 612 12 HOH HOH . 
F 5 HOH A 13 613 13 HOH HOH . 
F 5 HOH A 14 614 14 HOH HOH . 
F 5 HOH A 15 615 15 HOH HOH . 
F 5 HOH A 16 616 16 HOH HOH . 
F 5 HOH A 17 617 17 HOH HOH . 
F 5 HOH A 18 618 18 HOH HOH . 
F 5 HOH A 19 619 19 HOH HOH . 
F 5 HOH A 20 620 20 HOH HOH . 
F 5 HOH A 21 621 21 HOH HOH . 
F 5 HOH A 22 622 22 HOH HOH . 
F 5 HOH A 23 623 23 HOH HOH . 
F 5 HOH A 24 624 24 HOH HOH . 
F 5 HOH A 25 625 25 HOH HOH . 
F 5 HOH A 26 626 26 HOH HOH . 
F 5 HOH A 27 627 27 HOH HOH . 
F 5 HOH A 28 628 28 HOH HOH . 
F 5 HOH A 29 629 29 HOH HOH . 
F 5 HOH A 30 630 30 HOH HOH . 
F 5 HOH A 31 631 31 HOH HOH . 
F 5 HOH A 32 632 32 HOH HOH . 
F 5 HOH A 33 633 33 HOH HOH . 
F 5 HOH A 34 634 34 HOH HOH . 
F 5 HOH A 35 635 35 HOH HOH . 
F 5 HOH A 36 636 36 HOH HOH . 
F 5 HOH A 37 637 37 HOH HOH . 
F 5 HOH A 38 638 38 HOH HOH . 
F 5 HOH A 39 639 39 HOH HOH . 
F 5 HOH A 40 640 40 HOH HOH . 
F 5 HOH A 41 641 41 HOH HOH . 
F 5 HOH A 42 642 42 HOH HOH . 
F 5 HOH A 43 643 43 HOH HOH . 
F 5 HOH A 44 644 44 HOH HOH . 
F 5 HOH A 45 645 45 HOH HOH . 
F 5 HOH A 46 646 46 HOH HOH . 
F 5 HOH A 47 647 47 HOH HOH . 
F 5 HOH A 48 648 48 HOH HOH . 
F 5 HOH A 49 649 49 HOH HOH . 
F 5 HOH A 50 650 50 HOH HOH . 
F 5 HOH A 51 651 51 HOH HOH . 
F 5 HOH A 52 652 52 HOH HOH . 
F 5 HOH A 53 653 53 HOH HOH . 
F 5 HOH A 54 654 54 HOH HOH . 
F 5 HOH A 55 655 55 HOH HOH . 
F 5 HOH A 56 656 56 HOH HOH . 
F 5 HOH A 57 657 57 HOH HOH . 
F 5 HOH A 58 658 58 HOH HOH . 
F 5 HOH A 59 659 59 HOH HOH . 
F 5 HOH A 60 660 60 HOH HOH . 
F 5 HOH A 61 661 61 HOH HOH . 
F 5 HOH A 62 662 62 HOH HOH . 
F 5 HOH A 63 663 64 HOH HOH . 
F 5 HOH A 64 664 65 HOH HOH . 
F 5 HOH A 65 665 66 HOH HOH . 
F 5 HOH A 66 666 67 HOH HOH . 
F 5 HOH A 67 667 68 HOH HOH . 
F 5 HOH A 68 668 69 HOH HOH . 
F 5 HOH A 69 669 70 HOH HOH . 
F 5 HOH A 70 670 71 HOH HOH . 
F 5 HOH A 71 671 72 HOH HOH . 
F 5 HOH A 72 672 73 HOH HOH . 
F 5 HOH A 73 673 74 HOH HOH . 
F 5 HOH A 74 674 75 HOH HOH . 
F 5 HOH A 75 675 76 HOH HOH . 
F 5 HOH A 76 676 77 HOH HOH . 
F 5 HOH A 77 677 78 HOH HOH . 
F 5 HOH A 78 678 79 HOH HOH . 
F 5 HOH A 79 679 80 HOH HOH . 
F 5 HOH A 80 680 81 HOH HOH . 
F 5 HOH A 81 681 82 HOH HOH . 
F 5 HOH A 82 682 83 HOH HOH . 
F 5 HOH A 83 683 84 HOH HOH . 
F 5 HOH A 84 684 85 HOH HOH . 
F 5 HOH A 85 685 86 HOH HOH . 
F 5 HOH A 86 686 87 HOH HOH . 
F 5 HOH A 87 687 88 HOH HOH . 
F 5 HOH A 88 688 89 HOH HOH . 
F 5 HOH A 89 689 90 HOH HOH . 
F 5 HOH A 90 690 91 HOH HOH . 
F 5 HOH A 91 691 92 HOH HOH . 
F 5 HOH A 92 692 93 HOH HOH . 
F 5 HOH A 93 693 94 HOH HOH . 
F 5 HOH A 94 694 96 HOH HOH . 
F 5 HOH A 95 695 97 HOH HOH . 
F 5 HOH A 96 696 98 HOH HOH . 
F 5 HOH A 97 697 99 HOH HOH . 
F 5 HOH A 98 698 100 HOH HOH . 
F 5 HOH A 99 699 101 HOH HOH . 
F 5 HOH A 100 700 102 HOH HOH . 
F 5 HOH A 101 701 104 HOH HOH . 
F 5 HOH A 102 702 105 HOH HOH . 
F 5 HOH A 103 703 106 HOH HOH . 
F 5 HOH A 104 704 107 HOH HOH . 
F 5 HOH A 105 705 108 HOH HOH . 
F 5 HOH A 106 706 109 HOH HOH . 
F 5 HOH A 107 707 110 HOH HOH . 
F 5 HOH A 108 708 111 HOH HOH . 
F 5 HOH A 109 709 112 HOH HOH . 
F 5 HOH A 110 710 113 HOH HOH . 
F 5 HOH A 111 711 114 HOH HOH . 
F 5 HOH A 112 712 115 HOH HOH . 
F 5 HOH A 113 713 116 HOH HOH . 
F 5 HOH A 114 714 117 HOH HOH . 
F 5 HOH A 115 715 118 HOH HOH . 
F 5 HOH A 116 716 119 HOH HOH . 
F 5 HOH A 117 717 121 HOH HOH . 
F 5 HOH A 118 718 122 HOH HOH . 
F 5 HOH A 119 719 123 HOH HOH . 
F 5 HOH A 120 720 124 HOH HOH . 
F 5 HOH A 121 721 125 HOH HOH . 
F 5 HOH A 122 722 126 HOH HOH . 
F 5 HOH A 123 723 127 HOH HOH . 
F 5 HOH A 124 724 128 HOH HOH . 
F 5 HOH A 125 725 129 HOH HOH . 
F 5 HOH A 126 726 130 HOH HOH . 
F 5 HOH A 127 727 131 HOH HOH . 
F 5 HOH A 128 728 132 HOH HOH . 
F 5 HOH A 129 729 133 HOH HOH . 
F 5 HOH A 130 730 134 HOH HOH . 
F 5 HOH A 131 731 135 HOH HOH . 
F 5 HOH A 132 732 136 HOH HOH . 
F 5 HOH A 133 733 137 HOH HOH . 
F 5 HOH A 134 734 138 HOH HOH . 
F 5 HOH A 135 735 139 HOH HOH . 
F 5 HOH A 136 736 140 HOH HOH . 
F 5 HOH A 137 737 141 HOH HOH . 
F 5 HOH A 138 738 142 HOH HOH . 
F 5 HOH A 139 739 143 HOH HOH . 
F 5 HOH A 140 740 144 HOH HOH . 
F 5 HOH A 141 741 145 HOH HOH . 
F 5 HOH A 142 742 146 HOH HOH . 
F 5 HOH A 143 743 147 HOH HOH . 
F 5 HOH A 144 744 148 HOH HOH . 
F 5 HOH A 145 745 149 HOH HOH . 
F 5 HOH A 146 746 150 HOH HOH . 
F 5 HOH A 147 747 151 HOH HOH . 
F 5 HOH A 148 748 152 HOH HOH . 
F 5 HOH A 149 749 153 HOH HOH . 
F 5 HOH A 150 750 154 HOH HOH . 
F 5 HOH A 151 751 155 HOH HOH . 
F 5 HOH A 152 752 156 HOH HOH . 
F 5 HOH A 153 753 157 HOH HOH . 
F 5 HOH A 154 754 158 HOH HOH . 
F 5 HOH A 155 755 159 HOH HOH . 
F 5 HOH A 156 756 160 HOH HOH . 
F 5 HOH A 157 757 161 HOH HOH . 
F 5 HOH A 158 758 162 HOH HOH . 
F 5 HOH A 159 759 163 HOH HOH . 
F 5 HOH A 160 760 164 HOH HOH . 
F 5 HOH A 161 761 165 HOH HOH . 
F 5 HOH A 162 762 166 HOH HOH . 
F 5 HOH A 163 763 167 HOH HOH . 
F 5 HOH A 164 764 168 HOH HOH . 
F 5 HOH A 165 765 169 HOH HOH . 
F 5 HOH A 166 766 170 HOH HOH . 
F 5 HOH A 167 767 171 HOH HOH . 
F 5 HOH A 168 768 172 HOH HOH . 
F 5 HOH A 169 769 173 HOH HOH . 
F 5 HOH A 170 770 174 HOH HOH . 
F 5 HOH A 171 771 175 HOH HOH . 
F 5 HOH A 172 772 176 HOH HOH . 
F 5 HOH A 173 773 177 HOH HOH . 
F 5 HOH A 174 774 178 HOH HOH . 
F 5 HOH A 175 775 179 HOH HOH . 
F 5 HOH A 176 776 180 HOH HOH . 
F 5 HOH A 177 777 181 HOH HOH . 
F 5 HOH A 178 778 182 HOH HOH . 
F 5 HOH A 179 779 183 HOH HOH . 
F 5 HOH A 180 780 184 HOH HOH . 
F 5 HOH A 181 781 185 HOH HOH . 
F 5 HOH A 182 782 186 HOH HOH . 
F 5 HOH A 183 783 187 HOH HOH . 
F 5 HOH A 184 784 188 HOH HOH . 
F 5 HOH A 185 785 189 HOH HOH . 
F 5 HOH A 186 786 190 HOH HOH . 
F 5 HOH A 187 787 191 HOH HOH . 
F 5 HOH A 188 788 192 HOH HOH . 
F 5 HOH A 189 789 193 HOH HOH . 
F 5 HOH A 190 790 194 HOH HOH . 
F 5 HOH A 191 791 195 HOH HOH . 
F 5 HOH A 192 792 196 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 4 0.287 28.127 -10.189 1 60.59 ? C1 EDO 503 A 1 
HETATM 2 O O1 EDO . . . D 4 -1.002 27.558 -10.465 1 60.14 ? O1 EDO 503 A 1 
HETATM 3 C C2 EDO . . . D 4 1.281 27.763 -11.288 1 60.31 ? C2 EDO 503 A 1 
HETATM 4 O O2 EDO . . . D 4 1.964 28.946 -11.74 1 59.98 ? O2 EDO 503 A 1 
HETATM 5 H H11 EDO . . . D 4 0.2 29.214 -10.12 1 72.71 ? H11 EDO 503 A 1 
HETATM 6 H H12 EDO . . . D 4 0.652 27.757 -9.228 1 72.71 ? H12 EDO 503 A 1 
HETATM 7 H HO1 EDO . . . D 4 -1.618 27.798 -9.759 1 72.17 ? HO1 EDO 503 A 1 
HETATM 8 H H21 EDO . . . D 4 2.006 27.042 -10.905 1 72.38 ? H21 EDO 503 A 1 
HETATM 9 H H22 EDO . . . D 4 0.752 27.301 -12.125 1 72.38 ? H22 EDO 503 A 1 
HETATM 10 H HO2 EDO . . . D 4 2.592 28.71 -12.437 1 71.98 ? HO2 EDO 503 A 1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#