data_4MVC
#
_model_server_result.job_id            3Z1Z3oba3oVfxVV96wjurQ 
_model_server_result.datetime_utc      '2024-12-02 02:18:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4mvc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    4MVC 
#
_exptl.entry_id    4MVC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              488.324 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "[2-CYTIDYLATE-O'-PHOSPHONYLOXYL]-ETHYL-TRIMETHYL-AMMONIUM" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.21 
_cell.angle_gamma         90 
_cell.entry_id            4MVC 
_cell.length_a            87.26 
_cell.length_b            44.55 
_cell.length_c            97.13 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4MVC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C14 H26 N4 O11 P2' 
_chem_comp.formula_weight    488.324 
_chem_comp.id                CDC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "[2-CYTIDYLATE-O'-PHOSPHONYLOXYL]-ETHYL-TRIMETHYL-AMMONIUM" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 CDC sing 70 n n 
N1 C6 CDC sing 71 n n 
N1 C1' CDC sing 72 n n 
C2 N3 CDC sing 73 n n 
C2 O2 CDC doub 74 n n 
N3 C4 CDC doub 75 n n 
C4 C5 CDC sing 76 n n 
C4 N4 CDC sing 77 n n 
C5 C6 CDC doub 78 n n 
C5 H5 CDC sing 79 n n 
C6 H6 CDC sing 80 n n 
N4 H41 CDC sing 81 n n 
N4 H42 CDC sing 82 n n 
C1' C2' CDC sing 83 n n 
C1' O4' CDC sing 84 n n 
C1' H1' CDC sing 85 n n 
C2' O2' CDC sing 86 n n 
C2' C3' CDC sing 87 n n 
C2' H2' CDC sing 88 n n 
O2' "HO'2" CDC sing 89 n n 
C3' C4' CDC sing 90 n n 
C3' O3' CDC sing 91 n n 
C3' H3' CDC sing 92 n n 
C4' O4' CDC sing 93 n n 
C4' C5' CDC sing 94 n n 
C4' H4' CDC sing 95 n n 
O3' H3T CDC sing 96 n n 
C5' O5' CDC sing 97 n n 
C5' "H5'1" CDC sing 98 n n 
C5' "H5'2" CDC sing 99 n n 
O5' PA CDC sing 100 n n 
PA O1A CDC doub 101 n n 
PA O2A CDC sing 102 n n 
PA O3A CDC sing 103 n n 
O2A HO2A CDC sing 104 n n 
O3A PB CDC sing 105 n n 
PB O1B CDC sing 106 n n 
PB O2B CDC sing 107 n n 
PB O3B CDC doub 108 n n 
O1B C14 CDC sing 109 n n 
C14 C15 CDC sing 110 n n 
C14 H141 CDC sing 111 n n 
C14 H142 CDC sing 112 n n 
C15 N11 CDC sing 113 n n 
C15 H151 CDC sing 114 n n 
C15 H152 CDC sing 115 n n 
N11 C16 CDC sing 116 n n 
N11 C17 CDC sing 117 n n 
N11 C18 CDC sing 118 n n 
C16 H161 CDC sing 119 n n 
C16 H162 CDC sing 120 n n 
C16 H163 CDC sing 121 n n 
C17 H171 CDC sing 122 n n 
C17 H172 CDC sing 123 n n 
C17 H173 CDC sing 124 n n 
C18 H181 CDC sing 125 n n 
C18 H182 CDC sing 126 n n 
C18 H183 CDC sing 127 n n 
#
_atom_sites.entry_id                     4MVC 
_atom_sites.fract_transf_matrix[1][1]    0.01146 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004447 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022447 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011044 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CDC A 1 401 237 CDC CDC . 
D 2 CDC B 1 401 237 CDC CDC . 
E 3 HOH A 1 501 1 HOH HOH . 
E 3 HOH A 2 502 2 HOH HOH . 
E 3 HOH A 3 503 3 HOH HOH . 
E 3 HOH A 4 504 4 HOH HOH . 
E 3 HOH A 5 505 8 HOH HOH . 
E 3 HOH A 6 506 9 HOH HOH . 
E 3 HOH A 7 507 11 HOH HOH . 
E 3 HOH A 8 508 12 HOH HOH . 
E 3 HOH A 9 509 14 HOH HOH . 
E 3 HOH A 10 510 18 HOH HOH . 
E 3 HOH A 11 511 19 HOH HOH . 
F 3 HOH B 1 501 5 HOH HOH . 
F 3 HOH B 2 502 6 HOH HOH . 
F 3 HOH B 3 503 7 HOH HOH . 
F 3 HOH B 4 504 10 HOH HOH . 
F 3 HOH B 5 505 13 HOH HOH . 
F 3 HOH B 6 506 15 HOH HOH . 
F 3 HOH B 7 507 16 HOH HOH . 
F 3 HOH B 8 508 17 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 CDC . . . D 2 8.326 -10.788 -33.409 1 36.66 ? N1 CDC 401 B 1 
HETATM 2 C C2 CDC . . . D 2 8.892 -9.601 -33.677 1 37.58 ? C2 CDC 401 B 1 
HETATM 3 N N3 CDC . . . D 2 8.777 -8.563 -32.816 1 37.52 ? N3 CDC 401 B 1 
HETATM 4 C C4 CDC . . . D 2 8.091 -8.702 -31.661 1 49.61 ? C4 CDC 401 B 1 
HETATM 5 C C5 CDC . . . D 2 7.504 -9.927 -31.368 1 34.62 ? C5 CDC 401 B 1 
HETATM 6 C C6 CDC . . . D 2 7.641 -10.973 -32.273 1 37.25 ? C6 CDC 401 B 1 
HETATM 7 O O2 CDC . . . D 2 9.589 -9.436 -34.836 1 37.2 ? O2 CDC 401 B 1 
HETATM 8 N N4 CDC . . . D 2 7.981 -7.656 -30.799 1 30.85 ? N4 CDC 401 B 1 
HETATM 9 C C1' CDC . . . D 2 8.475 -11.893 -34.367 1 46.16 ? C1' CDC 401 B 1 
HETATM 10 C C2' CDC . . . D 2 9.644 -12.8 -34.007 1 37.41 ? C2' CDC 401 B 1 
HETATM 11 O O2' CDC . . . D 2 10.844 -12.404 -34.68 1 28.01 ? O2' CDC 401 B 1 
HETATM 12 C C3' CDC . . . D 2 9.21 -14.172 -34.476 1 35.26 ? C3' CDC 401 B 1 
HETATM 13 C C4' CDC . . . D 2 7.696 -14.107 -34.599 1 29.84 ? C4' CDC 401 B 1 
HETATM 14 O O4' CDC . . . D 2 7.315 -12.736 -34.397 1 40.25 ? O4' CDC 401 B 1 
HETATM 15 O O3' CDC . . . D 2 9.781 -14.435 -35.761 1 45.41 ? O3' CDC 401 B 1 
HETATM 16 C C5' CDC . . . D 2 7.025 -15.04 -33.593 1 24.55 ? C5' CDC 401 B 1 
HETATM 17 O O5' CDC . . . D 2 7.622 -14.925 -32.299 1 33.52 ? O5' CDC 401 B 1 
HETATM 18 P PA CDC . . . D 2 7.108 -15.857 -31.084 1 30.01 ? PA CDC 401 B 1 
HETATM 19 O O1A CDC . . . D 2 5.599 -15.917 -31.159 1 25.13 ? O1A CDC 401 B 1 
HETATM 20 O O2A CDC . . . D 2 7.752 -15.415 -29.79 1 16.85 ? O2A CDC 401 B 1 
HETATM 21 O O3A CDC . . . D 2 7.713 -17.302 -31.473 1 27.55 ? O3A CDC 401 B 1 
HETATM 22 P PB CDC . . . D 2 9.221 -17.724 -31.069 1 41.59 ? PB CDC 401 B 1 
HETATM 23 O O1B CDC . . . D 2 9.342 -19.221 -31.643 1 46.6 ? O1B CDC 401 B 1 
HETATM 24 O O2B CDC . . . D 2 10.196 -16.868 -31.845 1 15.07 ? O2B CDC 401 B 1 
HETATM 25 O O3B CDC . . . D 2 9.312 -17.811 -29.562 1 26.94 ? O3B CDC 401 B 1 
HETATM 26 C C14 CDC . . . D 2 9.904 -19.451 -32.933 1 36.83 ? C14 CDC 401 B 1 
HETATM 27 C C15 CDC . . . D 2 9.62 -20.886 -33.356 1 25.97 ? C15 CDC 401 B 1 
HETATM 28 N N11 CDC . . . D 2 10.588 -21.796 -32.728 1 24.1 ? N11 CDC 401 B 1 
HETATM 29 C C16 CDC . . . D 2 11.943 -21.252 -32.869 1 19.92 ? C16 CDC 401 B 1 
HETATM 30 C C17 CDC . . . D 2 10.501 -23.094 -33.41 1 25 ? C17 CDC 401 B 1 
HETATM 31 C C18 CDC . . . D 2 10.292 -21.96 -31.297 1 34.03 ? C18 CDC 401 B 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#