data_4MVM # _model_server_result.job_id q52EvPTJAmaTKiNIOf7HWQ _model_server_result.datetime_utc '2024-11-25 17:02:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mvm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":1307}' # _entry.id 4MVM # _exptl.entry_id 4MVM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 132.54 _cell.angle_gamma 90 _cell.entry_id 4MVM _cell.length_a 177.455 _cell.length_b 177.89 _cell.length_c 130.89 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MVM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 I N N ? 3 J N N ? 3 T N N ? 3 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 H CA CA . A CA 1304 1_555 Z O HOH . A HOH 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc2 H CA CA . A CA 1304 1_555 Z O HOH . A HOH 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc3 H CA CA . A CA 1304 1_555 AA O HOH . B HOH 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc4 H CA CA . A CA 1304 1_555 AA O HOH . B HOH 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc5 H CA CA . A CA 1304 1_555 BA O HOH . C HOH 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc6 H CA CA . A CA 1304 1_555 BA O HOH . C HOH 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc7 H CA CA . A CA 1304 1_555 CA O HOH . D HOH 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc8 H CA CA . A CA 1304 1_555 CA O HOH . D HOH 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc9 I CA CA . A CA 1305 1_555 Z O HOH . A HOH 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc10 I CA CA . A CA 1305 1_555 AA O HOH . B HOH 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.157 ? metalc ? metalc11 I CA CA . A CA 1305 1_555 AA O HOH . B HOH 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc12 I CA CA . A CA 1305 1_555 BA O HOH . C HOH 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc13 I CA CA . A CA 1305 1_555 CA O HOH . D HOH 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4MVM _atom_sites.fract_transf_matrix[1][1] 0.005635 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005171 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005621 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010369 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PX4 A 1 1301 4002 PX4 PX4 . F 2 PX4 A 1 1302 4017 PX4 PX4 . G 2 PX4 A 1 1303 4002 PX4 PX4 . H 3 CA A 1 1304 1 CA CA . I 3 CA A 1 1305 1 CA CA . J 3 CA A 1 1306 1 CA CA . K 2 PX4 B 1 1301 4002 PX4 PX4 . L 2 PX4 B 1 1302 4011 PX4 PX4 . M 2 PX4 B 1 1303 4017 PX4 PX4 . N 2 PX4 B 1 1304 4002 PX4 PX4 . O 2 PX4 C 1 1301 4002 PX4 PX4 . P 2 PX4 C 1 1302 4011 PX4 PX4 . Q 2 PX4 C 1 1303 4017 PX4 PX4 . R 2 PX4 C 1 1304 4011 PX4 PX4 . S 2 PX4 C 1 1305 4002 PX4 PX4 . T 3 CA C 1 1306 1 CA CA . U 3 CA C 1 1307 1 CA CA . V 2 PX4 D 1 1301 4002 PX4 PX4 . W 2 PX4 D 1 1302 4011 PX4 PX4 . X 2 PX4 D 1 1303 4017 PX4 PX4 . Y 2 PX4 D 1 1304 4002 PX4 PX4 . Z 4 HOH A 1 1401 1 HOH HOH . Z 4 HOH A 2 1402 8 HOH HOH . Z 4 HOH A 3 1403 9 HOH HOH . Z 4 HOH A 4 1404 3 HOH HOH . Z 4 HOH A 5 1405 1 HOH HOH . Z 4 HOH A 6 1406 3 HOH HOH . AA 4 HOH B 1 1401 4 HOH HOH . AA 4 HOH B 2 1402 6 HOH HOH . AA 4 HOH B 3 1403 12 HOH HOH . AA 4 HOH B 4 1404 2 HOH HOH . AA 4 HOH B 5 1405 2 HOH HOH . BA 4 HOH C 1 1401 2 HOH HOH . BA 4 HOH C 2 1402 5 HOH HOH . BA 4 HOH C 3 1403 10 HOH HOH . BA 4 HOH C 4 1404 4 HOH HOH . BA 4 HOH C 5 1405 4 HOH HOH . CA 4 HOH D 1 1401 3 HOH HOH . CA 4 HOH D 2 1402 7 HOH HOH . CA 4 HOH D 3 1403 11 HOH HOH . CA 4 HOH D 4 1404 1 HOH HOH . CA 4 HOH D 5 1405 3 HOH HOH . CA 4 HOH D 6 1406 2 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id U _atom_site.label_entity_id 3 _atom_site.Cartn_x 88.679 _atom_site.Cartn_y 43.634 _atom_site.Cartn_z 99.455 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 136.33 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1307 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #