data_4MVO # _model_server_result.job_id gcNZIGeNZzUtNRv7AFkdmQ _model_server_result.datetime_utc '2024-10-17 07:25:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mvo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1303}' # _entry.id 4MVO # _exptl.entry_id 4MVO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 678.94 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 132.63 _cell.angle_gamma 90 _cell.entry_id 4MVO _cell.length_a 177.475 _cell.length_b 177.48 _cell.length_c 130.96 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MVO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 K CA CA . A CA 1307 1_555 X O HOH . A HOH 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.085 ? metalc ? metalc2 K CA CA . A CA 1307 1_555 Y O HOH . B HOH 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.09 ? metalc ? metalc3 L CA CA . A CA 1308 1_555 X O HOH . A HOH 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc4 L CA CA . A CA 1308 1_555 X O HOH . A HOH 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc5 L CA CA . A CA 1308 1_555 Y O HOH . B HOH 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc6 L CA CA . A CA 1308 1_555 Y O HOH . B HOH 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc7 L CA CA . A CA 1308 1_555 Z O HOH . C HOH 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc8 L CA CA . A CA 1308 1_555 Z O HOH . C HOH 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc9 L CA CA . A CA 1308 1_555 AA O HOH . D HOH 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc10 L CA CA . A CA 1308 1_555 AA O HOH . D HOH 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? # _chem_comp.formula 'C36 H73 N O8 P 1' _chem_comp.formula_weight 678.94 _chem_comp.id PX4 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 PX4 sing 277 n n O1 H1P PX4 sing 278 n n O2 P1 PX4 doub 279 n n P1 O3 PX4 sing 280 n n P1 O4 PX4 sing 281 n n O3 C1 PX4 sing 282 n n C1 C2 PX4 sing 283 n n C1 H1 PX4 sing 284 n n C1 H2 PX4 sing 285 n n C2 N1 PX4 sing 286 n n C2 H3 PX4 sing 287 n n C2 H4 PX4 sing 288 n n N1 C3 PX4 sing 289 n n N1 C4 PX4 sing 290 n n N1 C5 PX4 sing 291 n n C3 H5 PX4 sing 292 n n C3 H6 PX4 sing 293 n n C3 H7 PX4 sing 294 n n C4 H8 PX4 sing 295 n n C4 H9 PX4 sing 296 n n C4 H10 PX4 sing 297 n n C5 H11 PX4 sing 298 n n C5 H12 PX4 sing 299 n n C5 H13 PX4 sing 300 n n O4 C6 PX4 sing 301 n n C6 C7 PX4 sing 302 n n C6 H14 PX4 sing 303 n n C6 H15 PX4 sing 304 n n C7 C8 PX4 sing 305 n n C7 O7 PX4 sing 306 n n C7 H16 PX4 sing 307 n n C8 O5 PX4 sing 308 n n C8 H17 PX4 sing 309 n n C8 H18 PX4 sing 310 n n O5 C9 PX4 sing 311 n n C9 O6 PX4 doub 312 n n C9 C10 PX4 sing 313 n n C10 C11 PX4 sing 314 n n C10 H19 PX4 sing 315 n n C10 H20 PX4 sing 316 n n C11 C12 PX4 sing 317 n n C11 H21 PX4 sing 318 n n C11 H22 PX4 sing 319 n n C12 C13 PX4 sing 320 n n C12 H23 PX4 sing 321 n n C12 H24 PX4 sing 322 n n C13 C14 PX4 sing 323 n n C13 H25 PX4 sing 324 n n C13 H26 PX4 sing 325 n n C14 C15 PX4 sing 326 n n C14 H27 PX4 sing 327 n n C14 H28 PX4 sing 328 n n C15 C16 PX4 sing 329 n n C15 H29 PX4 sing 330 n n C15 H30 PX4 sing 331 n n C16 C17 PX4 sing 332 n n C16 H31 PX4 sing 333 n n C16 H32 PX4 sing 334 n n C17 C18 PX4 sing 335 n n C17 H33 PX4 sing 336 n n C17 H34 PX4 sing 337 n n C18 C19 PX4 sing 338 n n C18 H35 PX4 sing 339 n n C18 H36 PX4 sing 340 n n C19 C20 PX4 sing 341 n n C19 H37 PX4 sing 342 n n C19 H38 PX4 sing 343 n n C20 C21 PX4 sing 344 n n C20 H39 PX4 sing 345 n n C20 H40 PX4 sing 346 n n C21 C22 PX4 sing 347 n n C21 H41 PX4 sing 348 n n C21 H42 PX4 sing 349 n n C22 H43 PX4 sing 350 n n C22 H44 PX4 sing 351 n n C22 H45 PX4 sing 352 n n O7 C23 PX4 sing 353 n n C23 O8 PX4 doub 354 n n C23 C24 PX4 sing 355 n n C24 C25 PX4 sing 356 n n C24 H46 PX4 sing 357 n n C24 H47 PX4 sing 358 n n C25 C26 PX4 sing 359 n n C25 H48 PX4 sing 360 n n C25 H49 PX4 sing 361 n n C26 C27 PX4 sing 362 n n C26 H50 PX4 sing 363 n n C26 H51 PX4 sing 364 n n C27 C28 PX4 sing 365 n n C27 H52 PX4 sing 366 n n C27 H53 PX4 sing 367 n n C28 C29 PX4 sing 368 n n C28 H54 PX4 sing 369 n n C28 H55 PX4 sing 370 n n C29 C30 PX4 sing 371 n n C29 H56 PX4 sing 372 n n C29 H57 PX4 sing 373 n n C30 C31 PX4 sing 374 n n C30 H58 PX4 sing 375 n n C30 H59 PX4 sing 376 n n C31 C32 PX4 sing 377 n n C31 H60 PX4 sing 378 n n C31 H61 PX4 sing 379 n n C32 C33 PX4 sing 380 n n C32 H62 PX4 sing 381 n n C32 H63 PX4 sing 382 n n C33 C34 PX4 sing 383 n n C33 H64 PX4 sing 384 n n C33 H65 PX4 sing 385 n n C34 C35 PX4 sing 386 n n C34 H66 PX4 sing 387 n n C34 H67 PX4 sing 388 n n C35 C36 PX4 sing 389 n n C35 H68 PX4 sing 390 n n C35 H69 PX4 sing 391 n n C36 H70 PX4 sing 392 n n C36 H71 PX4 sing 393 n n C36 H72 PX4 sing 394 n n # _atom_sites.entry_id 4MVO _atom_sites.fract_transf_matrix[1][1] 0.005635 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005187 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005634 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010379 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PX4 A 1 1301 4002 PX4 PX1 . F 2 PX4 A 1 1302 4002 PX4 PX4 . G 2 PX4 A 1 1303 4011 PX4 PX4 . H 2 PX4 A 1 1304 4011 PX4 PX4 . I 2 PX4 A 1 1305 4017 PX4 PX4 . J 2 PX4 A 1 1306 4002 PX4 PX4 . K 3 CA A 1 1307 1 CA CA . L 3 CA A 1 1308 1 CA CA . M 2 PX4 B 1 1301 4002 PX4 PX1 . N 2 PX4 B 1 1302 4017 PX4 PX4 . O 2 PX4 B 1 1303 4002 PX4 PX4 . P 3 CA B 1 1304 1 CA CA . Q 2 PX4 C 1 1301 4011 PX4 PX4 . R 2 PX4 C 1 1302 4017 PX4 PX4 . S 2 PX4 C 1 1303 4002 PX4 PX1 . T 2 PX4 C 1 1304 4002 PX4 PX4 . U 2 PX4 D 1 1301 4011 PX4 PX4 . V 2 PX4 D 1 1302 4017 PX4 PX4 . W 2 PX4 D 1 1303 4002 PX4 PX4 . X 4 HOH A 1 1401 1 HOH HOH . X 4 HOH A 2 1402 2 HOH HOH . Y 4 HOH B 1 1401 5 HOH HOH . Y 4 HOH B 2 1402 6 HOH HOH . Z 4 HOH C 1 1401 3 HOH HOH . Z 4 HOH C 2 1402 8 HOH HOH . AA 4 HOH D 1 1401 4 HOH HOH . AA 4 HOH D 2 1402 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PX4 . . . O 2 8.105 -75.938 6.484 1 111.45 -1 O1 PX4 1303 B 1 HETATM 2 O O2 PX4 . . . O 2 9.904 -77.005 7.724 1 114.69 -1 O2 PX4 1303 B 1 HETATM 3 P P1 PX4 . . . O 2 9.341 -75.666 7.323 1 118.15 ? P1 PX4 1303 B 1 HETATM 4 O O3 PX4 . . . O 2 10.412 -75.025 6.463 1 105 ? O3 PX4 1303 B 1 HETATM 5 O O4 PX4 . . . O 2 8.933 -74.779 8.604 1 97.31 ? O4 PX4 1303 B 1 HETATM 6 C C6 PX4 . . . O 2 9.414 -75.042 9.914 1 87.17 ? C6 PX4 1303 B 1 HETATM 7 C C7 PX4 . . . O 2 8.481 -74.524 10.992 1 88.28 ? C7 PX4 1303 B 1 HETATM 8 C C8 PX4 . . . O 2 8.107 -75.6 12.087 1 89.47 ? C8 PX4 1303 B 1 HETATM 9 O O5 PX4 . . . O 2 8.928 -75.752 13.266 1 70.67 ? O5 PX4 1303 B 1 HETATM 10 O O7 PX4 . . . O 2 8.797 -73.239 11.434 1 83.6 ? O7 PX4 1303 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 10 #