data_4MWF # _model_server_result.job_id mMkaDxzaaDFksu6ssmCKyA _model_server_result.datetime_utc '2024-11-12 20:37:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mwf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":701}' # _entry.id 4MWF # _exptl.entry_id 4MWF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4MWF _cell.length_a 47.132 _cell.length_b 166.553 _cell.length_c 209.963 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MWF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,I,M,N,O,P 1 1 C,E,F,G,H,J,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 K N N ? 6 L N N ? 6 M N N ? 6 N N N ? 6 O N N ? 6 P N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 4 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 4 5 4 MAN MAN C1 O1 . O2 HO2 . sing 5 ? 4 6 5 MAN MAN C1 O1 . O2 HO2 . sing 6 ? 4 7 3 MAN BMA C1 O1 . O6 HO6 . sing 7 ? 4 8 7 MAN MAN C1 O1 . O6 HO6 . sing 8 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n G NAG 1 E 1 NAG G 2 NAG 4 n G NAG 2 E 2 NAG G 3 NAG 4 n G BMA 3 E 3 BMA G 4 BMA 4 n G MAN 4 E 4 MAN G 10 MAN 4 n G MAN 5 E 5 MAN G 11 MAN 4 n G MAN 6 E 6 MAN G 12 MAN 4 n G MAN 7 E 7 MAN G 5 MAN 4 n G MAN 8 E 8 MAN G 6 MAN 5 n H NAG 1 F 1 NAG K 2 NAG 5 n H NAG 2 F 2 NAG K 3 NAG 5 n I NAG 1 G 1 NAG S 2 NAG 5 n I NAG 2 G 2 NAG S 3 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 106 A CYS 100 1_555 A SG CYS 111 A CYS 100 1_555 A ? ? F ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 B SG CYS 134 B CYS 134 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 C SG CYS 61 C CYS 494 1_555 C SG CYS 131 C CYS 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf5 C SG CYS 75 C CYS 508 1_555 C SG CYS 119 C CYS 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf6 C SG CYS 136 C CYS 569 1_555 C SG CYS 148 C CYS 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 C SG CYS 152 C CYS 585 1_555 C SG CYS 164 C CYS 597 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf8 C SG CYS 174 C CYS 607 1_555 C SG CYS 211 C CYS 644 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf9 D SG CYS 18 D CYS 429 1_555 D SG CYS 70 D CYS 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf10 D SG CYS 41 D CYS 452 1_555 D SG CYS 187 D CYS 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf11 D SG CYS 61 D CYS 494 1_555 D SG CYS 131 D CYS 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf12 D SG CYS 75 D CYS 508 1_555 D SG CYS 119 D CYS 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 D SG CYS 136 D CYS 569 1_555 D SG CYS 148 D CYS 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf14 D SG CYS 152 D CYS 585 1_555 D SG CYS 164 D CYS 597 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf15 D SG CYS 174 D CYS 607 1_555 D SG CYS 211 D CYS 644 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf16 E SG CYS 23 H CYS 22 1_555 E SG CYS 97 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf17 E SG CYS 106 H CYS 100 1_555 E SG CYS 111 H CYS 100 1_555 A ? ? F ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf18 E SG CYS 155 H CYS 140 1_555 E SG CYS 211 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf19 F SG CYS 23 L CYS 23 1_555 F SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf20 F SG CYS 134 L CYS 134 1_555 F SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 C ND2 ASN 19 C ASN 430 1_555 G C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 C ND2 ASN 99 C ASN 532 1_555 J C1 NAG . C NAG 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale3 C ND2 ASN 107 C ASN 540 1_555 K C1 NAG . C NAG 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale4 C ND2 ASN 123 C ASN 556 1_555 H C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale5 C ND2 ASN 190 C ASN 623 1_555 L C1 NAG . C NAG 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale6 D ND2 ASN 19 D ASN 430 1_555 M C1 NAG . D NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale7 D ND2 ASN 99 D ASN 532 1_555 N C1 NAG . D NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale8 D ND2 ASN 107 D ASN 540 1_555 O C1 NAG . D NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale9 D ND2 ASN 123 D ASN 556 1_555 I C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale10 D ND2 ASN 190 D ASN 623 1_555 P C1 NAG . D NAG 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale11 G O4 NAG . E NAG 1 1_555 G C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale12 G O4 NAG . E NAG 2 1_555 G C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale13 G O3 BMA . E BMA 3 1_555 G C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.579 ? covale ? covale14 G O6 BMA . E BMA 3 1_555 G C1 MAN . E MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.527 ? covale ? covale15 G O2 MAN . E MAN 4 1_555 G C1 MAN . E MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale16 G O2 MAN . E MAN 5 1_555 G C1 MAN . E MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale17 G O6 MAN . E MAN 7 1_555 G C1 MAN . E MAN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale18 H O4 NAG . F NAG 1 1_555 H C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale19 I O4 NAG . G NAG 1 1_555 I C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 283 n n C1 O1 NAG sing 284 n n C1 O5 NAG sing 285 n n C1 H1 NAG sing 286 n n C2 C3 NAG sing 287 n n C2 N2 NAG sing 288 n n C2 H2 NAG sing 289 n n C3 C4 NAG sing 290 n n C3 O3 NAG sing 291 n n C3 H3 NAG sing 292 n n C4 C5 NAG sing 293 n n C4 O4 NAG sing 294 n n C4 H4 NAG sing 295 n n C5 C6 NAG sing 296 n n C5 O5 NAG sing 297 n n C5 H5 NAG sing 298 n n C6 O6 NAG sing 299 n n C6 H61 NAG sing 300 n n C6 H62 NAG sing 301 n n C7 C8 NAG sing 302 n n C7 N2 NAG sing 303 n n C7 O7 NAG doub 304 n n C8 H81 NAG sing 305 n n C8 H82 NAG sing 306 n n C8 H83 NAG sing 307 n n N2 HN2 NAG sing 308 n n O1 HO1 NAG sing 309 n n O3 HO3 NAG sing 310 n n O4 HO4 NAG sing 311 n n O6 HO6 NAG sing 312 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4MWF _atom_sites.fract_transf_matrix[1][1] 0.021217 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006004 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004763 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 6 NAG C 1 711 2 NAG NAG . K 6 NAG C 1 712 2 NAG NAG . L 6 NAG C 1 713 2 NAG NAG . M 6 NAG D 1 701 2 NAG NAG . N 6 NAG D 1 702 2 NAG NAG . O 6 NAG D 1 703 2 NAG NAG . P 6 NAG D 1 706 2 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . M 6 40.355 23.281 -12.742 1 107.99 ? C1 NAG 701 D 1 HETATM 2 C C2 NAG . . . M 6 40.255 24.786 -12.526 1 105.7 ? C2 NAG 701 D 1 HETATM 3 C C3 NAG . . . M 6 38.907 25.235 -11.964 1 105.02 ? C3 NAG 701 D 1 HETATM 4 C C4 NAG . . . M 6 37.757 24.584 -12.719 1 117.12 ? C4 NAG 701 D 1 HETATM 5 C C5 NAG . . . M 6 37.97 23.076 -12.791 1 116.68 ? C5 NAG 701 D 1 HETATM 6 C C6 NAG . . . M 6 36.875 22.402 -13.605 1 126.67 ? C6 NAG 701 D 1 HETATM 7 C C7 NAG . . . M 6 42.24 26.045 -11.975 1 103.4 ? C7 NAG 701 D 1 HETATM 8 C C8 NAG . . . M 6 43.47 26.045 -11.117 1 102.39 ? C8 NAG 701 D 1 HETATM 9 N N2 NAG . . . M 6 41.313 25.167 -11.62 1 96.78 ? N2 NAG 701 D 1 HETATM 10 O O3 NAG . . . M 6 38.789 26.64 -12.055 1 100.2 ? O3 NAG 701 D 1 HETATM 11 O O4 NAG . . . M 6 36.531 24.882 -12.08 1 116.45 ? O4 NAG 701 D 1 HETATM 12 O O5 NAG . . . M 6 39.211 22.772 -13.402 1 111.03 ? O5 NAG 701 D 1 HETATM 13 O O6 NAG . . . M 6 37.45 21.907 -14.794 1 128.6 ? O6 NAG 701 D 1 HETATM 14 O O7 NAG . . . M 6 42.113 26.82 -12.928 1 95.08 ? O7 NAG 701 D 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #