data_4MX1 # _model_server_result.job_id O--xaZmorIzjqOQeeEaVpw _model_server_result.datetime_utc '2024-12-11 07:20:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mx1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 4MX1 # _exptl.entry_id 4MX1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 104.061 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4MX1 _cell.length_a 68.102 _cell.length_b 68.102 _cell.length_c 140.532 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MX1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _chem_comp.formula 'C3 H4 O4' _chem_comp.formula_weight 104.061 _chem_comp.id MLA _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DICARBOXYLIC ACID C3;PROPANEDIOLIC ACID;METHANEDICARBOXYLIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1A MLA sing 282 n n C1 O1B MLA doub 283 n n C1 C2 MLA sing 284 n n O1A H1A MLA sing 285 n n C2 C3 MLA sing 286 n n C2 HC21 MLA sing 287 n n C2 HC22 MLA sing 288 n n C3 O3A MLA doub 289 n n C3 O3B MLA sing 290 n n O3B H3B MLA sing 291 n n # _atom_sites.entry_id 4MX1 _atom_sites.fract_transf_matrix[1][1] 0.014684 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014684 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007116 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1MX A 1 301 1 1MX 171 . C 3 SO4 A 1 302 2 SO4 SO4 . D 4 MLA A 1 303 1 MLA MLA . E 4 MLA A 1 304 2 MLA MLA . F 5 HOH A 1 401 1 HOH HOH . F 5 HOH A 2 402 2 HOH HOH . F 5 HOH A 3 403 3 HOH HOH . F 5 HOH A 4 404 4 HOH HOH . F 5 HOH A 5 405 7 HOH HOH . F 5 HOH A 6 406 8 HOH HOH . F 5 HOH A 7 407 9 HOH HOH . F 5 HOH A 8 408 10 HOH HOH . F 5 HOH A 9 409 11 HOH HOH . F 5 HOH A 10 410 12 HOH HOH . F 5 HOH A 11 411 13 HOH HOH . F 5 HOH A 12 412 14 HOH HOH . F 5 HOH A 13 413 15 HOH HOH . F 5 HOH A 14 414 16 HOH HOH . F 5 HOH A 15 415 17 HOH HOH . F 5 HOH A 16 416 18 HOH HOH . F 5 HOH A 17 417 19 HOH HOH . F 5 HOH A 18 418 20 HOH HOH . F 5 HOH A 19 419 21 HOH HOH . F 5 HOH A 20 420 22 HOH HOH . F 5 HOH A 21 421 23 HOH HOH . F 5 HOH A 22 422 24 HOH HOH . F 5 HOH A 23 423 25 HOH HOH . F 5 HOH A 24 424 26 HOH HOH . F 5 HOH A 25 425 27 HOH HOH . F 5 HOH A 26 426 28 HOH HOH . F 5 HOH A 27 427 29 HOH HOH . F 5 HOH A 28 428 30 HOH HOH . F 5 HOH A 29 429 31 HOH HOH . F 5 HOH A 30 430 32 HOH HOH . F 5 HOH A 31 431 33 HOH HOH . F 5 HOH A 32 432 34 HOH HOH . F 5 HOH A 33 433 35 HOH HOH . F 5 HOH A 34 434 36 HOH HOH . F 5 HOH A 35 435 37 HOH HOH . F 5 HOH A 36 436 38 HOH HOH . F 5 HOH A 37 437 39 HOH HOH . F 5 HOH A 38 438 40 HOH HOH . F 5 HOH A 39 439 41 HOH HOH . F 5 HOH A 40 440 42 HOH HOH . F 5 HOH A 41 441 43 HOH HOH . F 5 HOH A 42 442 44 HOH HOH . F 5 HOH A 43 443 45 HOH HOH . F 5 HOH A 44 444 46 HOH HOH . F 5 HOH A 45 445 47 HOH HOH . F 5 HOH A 46 446 48 HOH HOH . F 5 HOH A 47 447 49 HOH HOH . F 5 HOH A 48 448 50 HOH HOH . F 5 HOH A 49 449 51 HOH HOH . F 5 HOH A 50 450 52 HOH HOH . F 5 HOH A 51 451 53 HOH HOH . F 5 HOH A 52 452 54 HOH HOH . F 5 HOH A 53 453 55 HOH HOH . F 5 HOH A 54 454 56 HOH HOH . F 5 HOH A 55 455 57 HOH HOH . F 5 HOH A 56 456 58 HOH HOH . F 5 HOH A 57 457 59 HOH HOH . F 5 HOH A 58 458 60 HOH HOH . F 5 HOH A 59 459 61 HOH HOH . F 5 HOH A 60 460 63 HOH HOH . F 5 HOH A 61 461 64 HOH HOH . F 5 HOH A 62 462 65 HOH HOH . F 5 HOH A 63 463 66 HOH HOH . F 5 HOH A 64 464 67 HOH HOH . F 5 HOH A 65 465 68 HOH HOH . F 5 HOH A 66 466 69 HOH HOH . F 5 HOH A 67 467 70 HOH HOH . F 5 HOH A 68 468 71 HOH HOH . F 5 HOH A 69 469 72 HOH HOH . F 5 HOH A 70 470 73 HOH HOH . F 5 HOH A 71 471 75 HOH HOH . F 5 HOH A 72 472 77 HOH HOH . F 5 HOH A 73 473 78 HOH HOH . F 5 HOH A 74 474 79 HOH HOH . F 5 HOH A 75 475 81 HOH HOH . F 5 HOH A 76 476 82 HOH HOH . F 5 HOH A 77 477 83 HOH HOH . F 5 HOH A 78 478 84 HOH HOH . F 5 HOH A 79 479 85 HOH HOH . F 5 HOH A 80 480 86 HOH HOH . F 5 HOH A 81 481 87 HOH HOH . F 5 HOH A 82 482 88 HOH HOH . F 5 HOH A 83 483 89 HOH HOH . F 5 HOH A 84 484 90 HOH HOH . F 5 HOH A 85 485 91 HOH HOH . F 5 HOH A 86 486 92 HOH HOH . F 5 HOH A 87 487 93 HOH HOH . F 5 HOH A 88 488 94 HOH HOH . F 5 HOH A 89 489 95 HOH HOH . F 5 HOH A 90 490 96 HOH HOH . F 5 HOH A 91 491 97 HOH HOH . F 5 HOH A 92 492 98 HOH HOH . F 5 HOH A 93 493 100 HOH HOH . F 5 HOH A 94 494 101 HOH HOH . F 5 HOH A 95 495 102 HOH HOH . F 5 HOH A 96 496 103 HOH HOH . F 5 HOH A 97 497 104 HOH HOH . F 5 HOH A 98 498 106 HOH HOH . F 5 HOH A 99 499 107 HOH HOH . F 5 HOH A 100 500 108 HOH HOH . F 5 HOH A 101 501 109 HOH HOH . F 5 HOH A 102 502 111 HOH HOH . F 5 HOH A 103 503 112 HOH HOH . F 5 HOH A 104 504 113 HOH HOH . F 5 HOH A 105 505 114 HOH HOH . F 5 HOH A 106 506 115 HOH HOH . F 5 HOH A 107 507 116 HOH HOH . F 5 HOH A 108 508 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLA . . . E 4 -9.299 23.337 -22.005 1 54.25 ? C1 MLA 304 A 1 HETATM 2 O O1A MLA . . . E 4 -8.823 22.913 -20.838 1 54.31 ? O1A MLA 304 A 1 HETATM 3 O O1B MLA . . . E 4 -10.168 22.642 -22.488 1 54.34 ? O1B MLA 304 A 1 HETATM 4 C C2 MLA . . . E 4 -8.765 24.612 -22.676 1 56.97 ? C2 MLA 304 A 1 HETATM 5 C C3 MLA . . . E 4 -8.566 24.485 -24.185 1 57.82 ? C3 MLA 304 A 1 HETATM 6 O O3A MLA . . . E 4 -8.536 25.58 -24.987 1 56.14 ? O3A MLA 304 A 1 HETATM 7 O O3B MLA . . . E 4 -8.441 23.369 -24.685 1 56.9 ? O3B MLA 304 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #