data_4MX9 # _model_server_result.job_id jWIp1jkQ2Nb1bEDgL496wA _model_server_result.datetime_utc '2024-11-16 05:38:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mx9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 4MX9 # _exptl.entry_id 4MX9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 416.519 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(6-ethoxynaphthalen-2-yl)-1-[(1-methylpiperidin-4-yl)methyl]-1H-pyrazolo[3,4-d]pyrimidin-4-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.84 _cell.angle_gamma 90 _cell.entry_id 4MX9 _cell.length_a 48.38 _cell.length_b 73.141 _cell.length_c 66.27 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MX9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H28 N6 O' _chem_comp.formula_weight 416.519 _chem_comp.id 2E8 _chem_comp.mon_nstd_flag . _chem_comp.name 3-(6-ethoxynaphthalen-2-yl)-1-[(1-methylpiperidin-4-yl)methyl]-1H-pyrazolo[3,4-d]pyrimidin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAD CAF 2E8 doub 1 n y CAD CAU 2E8 sing 2 n y CAF CAZ 2E8 sing 3 n y OAT CAU 2E8 sing 4 n n OAT CAK 2E8 sing 5 n n CAU CAI 2E8 doub 6 n y CAA CAK 2E8 sing 7 n n CAZ CAJ 2E8 doub 8 n y CAZ CAY 2E8 sing 9 n y CAJ CAV 2E8 sing 10 n y CAI CAY 2E8 sing 11 n y CAY CAG 2E8 doub 12 n y NAC C6 2E8 sing 13 n n CAV CAX 2E8 sing 14 n n CAV CAE 2E8 doub 15 n y C6 N1 2E8 sing 16 n y C6 C5 2E8 doub 17 n y N1 C2 2E8 doub 18 n y CAX C5 2E8 sing 19 n y CAX NAS 2E8 doub 20 n y C5 C4 2E8 sing 21 n y CAG CAE 2E8 sing 22 n y NAS NBE 2E8 sing 23 n y C2 N3 2E8 sing 24 n y C4 N3 2E8 doub 25 n y C4 NBE 2E8 sing 26 n y NBE CAP 2E8 sing 27 n n CAP CBC 2E8 sing 28 n n CBC CAL 2E8 sing 29 n n CBC CAM 2E8 sing 30 n n CAL CAN 2E8 sing 31 n n CAM CAO 2E8 sing 32 n n CAN NBD 2E8 sing 33 n n CAO NBD 2E8 sing 34 n n NBD CAB 2E8 sing 35 n n CAL H1 2E8 sing 36 n n CAL H2 2E8 sing 37 n n CAN H3 2E8 sing 38 n n CAN H4 2E8 sing 39 n n CAB H6 2E8 sing 40 n n CAB H7 2E8 sing 41 n n CAB H8 2E8 sing 42 n n CAO H9 2E8 sing 43 n n CAO H10 2E8 sing 44 n n CAM H11 2E8 sing 45 n n CAM H12 2E8 sing 46 n n CBC H13 2E8 sing 47 n n CAP H14 2E8 sing 48 n n CAP H15 2E8 sing 49 n n C2 H16 2E8 sing 50 n n NAC H17 2E8 sing 51 n n NAC H18 2E8 sing 52 n n CAJ H19 2E8 sing 53 n n CAE H20 2E8 sing 54 n n CAG H21 2E8 sing 55 n n CAI H22 2E8 sing 56 n n CAF H23 2E8 sing 57 n n CAD H24 2E8 sing 58 n n CAK H25 2E8 sing 59 n n CAK H26 2E8 sing 60 n n CAA H27 2E8 sing 61 n n CAA H28 2E8 sing 62 n n CAA H29 2E8 sing 63 n n # _atom_sites.entry_id 4MX9 _atom_sites.fract_transf_matrix[1][1] 0.02067 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003585 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013672 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015315 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2E8 A 1 601 601 2E8 DRG . C 3 HOH A 1 701 1 HOH HOH . C 3 HOH A 2 702 2 HOH HOH . C 3 HOH A 3 703 3 HOH HOH . C 3 HOH A 4 704 4 HOH HOH . C 3 HOH A 5 705 5 HOH HOH . C 3 HOH A 6 706 6 HOH HOH . C 3 HOH A 7 707 7 HOH HOH . C 3 HOH A 8 708 8 HOH HOH . C 3 HOH A 9 709 9 HOH HOH . C 3 HOH A 10 710 10 HOH HOH . C 3 HOH A 11 711 11 HOH HOH . C 3 HOH A 12 712 12 HOH HOH . C 3 HOH A 13 713 13 HOH HOH . C 3 HOH A 14 714 14 HOH HOH . C 3 HOH A 15 715 15 HOH HOH . C 3 HOH A 16 716 16 HOH HOH . C 3 HOH A 17 717 17 HOH HOH . C 3 HOH A 18 718 18 HOH HOH . C 3 HOH A 19 719 19 HOH HOH . C 3 HOH A 20 720 20 HOH HOH . C 3 HOH A 21 721 21 HOH HOH . C 3 HOH A 22 722 22 HOH HOH . C 3 HOH A 23 723 23 HOH HOH . C 3 HOH A 24 724 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAL 2E8 . . . B 2 -2.065 -17.682 -29.247 1 90.2 ? CAL 2E8 601 A 1 HETATM 2 C CAN 2E8 . . . B 2 -1.916 -16.384 -28.473 1 92.46 ? CAN 2E8 601 A 1 HETATM 3 N NBD 2E8 . . . B 2 -2.966 -16.219 -27.446 1 91.36 ? NBD 2E8 601 A 1 HETATM 4 C CAB 2E8 . . . B 2 -2.847 -14.865 -26.883 1 85.02 ? CAB 2E8 601 A 1 HETATM 5 C CAO 2E8 . . . B 2 -4.273 -16.27 -28.082 1 91.85 ? CAO 2E8 601 A 1 HETATM 6 C CAM 2E8 . . . B 2 -4.499 -17.615 -28.753 1 85.26 ? CAM 2E8 601 A 1 HETATM 7 C CBC 2E8 . . . B 2 -3.477 -17.866 -29.854 1 80.09 ? CBC 2E8 601 A 1 HETATM 8 C CAP 2E8 . . . B 2 -3.735 -19.289 -30.36 1 62.84 ? CAP 2E8 601 A 1 HETATM 9 N NBE 2E8 . . . B 2 -2.573 -20.104 -30.694 1 49.68 ? NBE 2E8 601 A 1 HETATM 10 N NAS 2E8 . . . B 2 -1.424 -19.753 -30.904 1 40.1 ? NAS 2E8 601 A 1 HETATM 11 C C4 2E8 . . . B 2 -2.706 -21.386 -30.834 1 45.55 ? C4 2E8 601 A 1 HETATM 12 N N3 2E8 . . . B 2 -3.78 -22.141 -30.711 1 41.99 ? N3 2E8 601 A 1 HETATM 13 C C2 2E8 . . . B 2 -3.656 -23.432 -30.902 1 43.47 ? C2 2E8 601 A 1 HETATM 14 N N1 2E8 . . . B 2 -2.483 -23.967 -31.215 1 43.21 ? N1 2E8 601 A 1 HETATM 15 C C6 2E8 . . . B 2 -1.417 -23.228 -31.364 1 42.16 ? C6 2E8 601 A 1 HETATM 16 N NAC 2E8 . . . B 2 -0.304 -23.843 -31.673 1 41.79 ? NAC 2E8 601 A 1 HETATM 17 C C5 2E8 . . . B 2 -1.494 -21.882 -31.163 1 42.02 ? C5 2E8 601 A 1 HETATM 18 C CAX 2E8 . . . B 2 -0.679 -20.793 -31.187 1 36.09 ? CAX 2E8 601 A 1 HETATM 19 C CAV 2E8 . . . B 2 0.644 -20.726 -31.484 1 30.69 ? CAV 2E8 601 A 1 HETATM 20 C CAJ 2E8 . . . B 2 1.198 -21.493 -32.479 1 29.52 ? CAJ 2E8 601 A 1 HETATM 21 C CAE 2E8 . . . B 2 1.442 -19.844 -30.819 1 28.09 ? CAE 2E8 601 A 1 HETATM 22 C CAG 2E8 . . . B 2 2.777 -19.732 -31.106 1 26.38 ? CAG 2E8 601 A 1 HETATM 23 C CAY 2E8 . . . B 2 3.315 -20.498 -32.09 1 26.36 ? CAY 2E8 601 A 1 HETATM 24 C CAI 2E8 . . . B 2 4.641 -20.389 -32.393 1 25.55 ? CAI 2E8 601 A 1 HETATM 25 C CAZ 2E8 . . . B 2 2.529 -21.375 -32.769 1 27.44 ? CAZ 2E8 601 A 1 HETATM 26 C CAF 2E8 . . . B 2 3.069 -22.147 -33.748 1 27.04 ? CAF 2E8 601 A 1 HETATM 27 C CAD 2E8 . . . B 2 4.404 -22.057 -34.062 1 26.66 ? CAD 2E8 601 A 1 HETATM 28 C CAU 2E8 . . . B 2 5.196 -21.172 -33.383 1 26.78 ? CAU 2E8 601 A 1 HETATM 29 O OAT 2E8 . . . B 2 6.486 -21.091 -33.704 1 26.65 ? OAT 2E8 601 A 1 HETATM 30 C CAK 2E8 . . . B 2 7.272 -21.458 -32.617 1 28.23 ? CAK 2E8 601 A 1 HETATM 31 C CAA 2E8 . . . B 2 8.758 -21.323 -32.91 1 28.09 ? CAA 2E8 601 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 373 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 31 #