data_4MXA # _model_server_result.job_id Utpu9Y2LRBuAXPQfQtrmww _model_server_result.datetime_utc '2024-11-16 02:46:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mxa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 4MXA # _exptl.entry_id 4MXA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 402.492 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(6-ethoxynaphthalen-2-yl)-1-(piperidin-4-ylmethyl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.28 _cell.angle_gamma 90 _cell.entry_id 4MXA _cell.length_a 48.22 _cell.length_b 72.53 _cell.length_c 65.65 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MXA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H26 N6 O' _chem_comp.formula_weight 402.492 _chem_comp.id BK7 _chem_comp.mon_nstd_flag . _chem_comp.name 3-(6-ethoxynaphthalen-2-yl)-1-(piperidin-4-ylmethyl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms RM-1-132 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C6 BK7 doub 70 n y C2 N1 BK7 sing 71 n y C2 N3 BK7 doub 72 n y N3 C4 BK7 sing 73 n y C4 NBD BK7 sing 74 n y C4 C5 BK7 doub 75 n y C5 CAX BK7 sing 76 n y C6 C5 BK7 sing 77 n y C6 NAB BK7 sing 78 n n CAD CAF BK7 doub 79 n y CAD CAV BK7 sing 80 n y CAE CAC BK7 doub 81 n y CAF CAY BK7 sing 82 n y CAH CAU BK7 doub 83 n y CAI CAZ BK7 sing 84 n y CAJ CAA BK7 sing 85 n n CAJ OAT BK7 sing 86 n n CAK CAM BK7 sing 87 n n CAL NAS BK7 sing 88 n n CAL CAN BK7 sing 89 n n CAM CBC BK7 sing 90 n n CAN CBC BK7 sing 91 n n CAO NBD BK7 sing 92 n n NAR CAX BK7 doub 93 n y NAS CAK BK7 sing 94 n n CAU CAC BK7 sing 95 n y CAU OAT BK7 sing 96 n n CAV CAI BK7 doub 97 n y CAX CAV BK7 sing 98 n n CAY CAH BK7 sing 99 n y CAY CAZ BK7 doub 100 n y CAZ CAE BK7 sing 101 n y CBC CAO BK7 sing 102 n n NBD NAR BK7 sing 103 n y C2 H2 BK7 sing 104 n n CAA HAA BK7 sing 105 n n CAA HAAA BK7 sing 106 n n CAA HAAB BK7 sing 107 n n NAB HNAB BK7 sing 108 n n NAB HNAA BK7 sing 109 n n CAC HAC BK7 sing 110 n n CAD HAD BK7 sing 111 n n CAE HAE BK7 sing 112 n n CAF HAF BK7 sing 113 n n CAH HAH BK7 sing 114 n n CAI HAI BK7 sing 115 n n CAJ HAJ BK7 sing 116 n n CAJ HAJA BK7 sing 117 n n CAK HAK BK7 sing 118 n n CAK HAKA BK7 sing 119 n n CAL HAL BK7 sing 120 n n CAL HALA BK7 sing 121 n n CAM HAM BK7 sing 122 n n CAM HAMA BK7 sing 123 n n CAN HAN BK7 sing 124 n n CAN HANA BK7 sing 125 n n CAO HAO BK7 sing 126 n n CAO HAOA BK7 sing 127 n n NAS HNAS BK7 sing 128 n n CBC HBC BK7 sing 129 n n # _atom_sites.entry_id 4MXA _atom_sites.fract_transf_matrix[1][1] 0.020738 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003389 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013787 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015434 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BK7 A 1 601 601 BK7 BK7 . C 3 HOH A 1 701 1 HOH HOH . C 3 HOH A 2 702 2 HOH HOH . C 3 HOH A 3 703 3 HOH HOH . C 3 HOH A 4 704 4 HOH HOH . C 3 HOH A 5 705 5 HOH HOH . C 3 HOH A 6 706 6 HOH HOH . C 3 HOH A 7 707 7 HOH HOH . C 3 HOH A 8 708 8 HOH HOH . C 3 HOH A 9 709 9 HOH HOH . C 3 HOH A 10 710 10 HOH HOH . C 3 HOH A 11 711 11 HOH HOH . C 3 HOH A 12 712 12 HOH HOH . C 3 HOH A 13 713 13 HOH HOH . C 3 HOH A 14 714 14 HOH HOH . C 3 HOH A 15 715 15 HOH HOH . C 3 HOH A 16 716 16 HOH HOH . C 3 HOH A 17 717 17 HOH HOH . C 3 HOH A 18 718 18 HOH HOH . C 3 HOH A 19 719 19 HOH HOH . C 3 HOH A 20 720 20 HOH HOH . C 3 HOH A 21 721 21 HOH HOH . C 3 HOH A 22 722 22 HOH HOH . C 3 HOH A 23 723 23 HOH HOH . C 3 HOH A 24 724 24 HOH HOH . C 3 HOH A 25 725 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 BK7 . . . B 2 -3.015 -23.516 -31.031 1 37.93 ? N1 BK7 601 A 1 HETATM 2 C C2 BK7 . . . B 2 -4.161 -22.945 -30.723 1 35.09 ? C2 BK7 601 A 1 HETATM 3 N N3 BK7 . . . B 2 -4.226 -21.628 -30.569 1 38.38 ? N3 BK7 601 A 1 HETATM 4 C C4 BK7 . . . B 2 -3.135 -20.857 -30.755 1 41.06 ? C4 BK7 601 A 1 HETATM 5 C C5 BK7 . . . B 2 -1.924 -21.429 -31.089 1 39.07 ? C5 BK7 601 A 1 HETATM 6 C C6 BK7 . . . B 2 -1.888 -22.793 -31.232 1 38.47 ? C6 BK7 601 A 1 HETATM 7 C CAA BK7 . . . B 2 8.44 -21.482 -31.711 1 28.39 ? CAA BK7 601 A 1 HETATM 8 N NAB BK7 . . . B 2 -0.764 -23.399 -31.531 1 39 ? NAB BK7 601 A 1 HETATM 9 C CAC BK7 . . . B 2 4.422 -21.445 -33.83 1 30.51 ? CAC BK7 601 A 1 HETATM 10 C CAD BK7 . . . B 2 1.11 -19.899 -30.499 1 37.07 ? CAD BK7 601 A 1 HETATM 11 C CAE BK7 . . . B 2 3.038 -21.449 -33.779 1 32.76 ? CAE BK7 601 A 1 HETATM 12 C CAF BK7 . . . B 2 2.489 -19.896 -30.561 1 35.43 ? CAF BK7 601 A 1 HETATM 13 C CAH BK7 . . . B 2 4.467 -20.382 -31.669 1 29.08 ? CAH BK7 601 A 1 HETATM 14 C CAI BK7 . . . B 2 0.972 -20.932 -32.608 1 35.82 ? CAI BK7 601 A 1 HETATM 15 C CAJ BK7 . . . B 2 6.946 -21.863 -31.867 1 29.24 ? CAJ BK7 601 A 1 HETATM 16 C CAK BK7 . . . B 2 -5.26 -17.079 -27.141 1 60.46 ? CAK BK7 601 A 1 HETATM 17 C CAL BK7 . . . B 2 -2.863 -16.778 -27.106 1 74.5 ? CAL BK7 601 A 1 HETATM 18 C CAM BK7 . . . B 2 -5.253 -17.491 -28.582 1 60.54 ? CAM BK7 601 A 1 HETATM 19 C CAN BK7 . . . B 2 -2.743 -17.309 -28.548 1 72.51 ? CAN BK7 601 A 1 HETATM 20 C CAO BK7 . . . B 2 -3.892 -18.542 -30.359 1 56.95 ? CAO BK7 601 A 1 HETATM 21 N NAR BK7 . . . B 2 -1.73 -19.26 -30.913 1 45.94 ? NAR BK7 601 A 1 HETATM 22 N NAS BK7 . . . B 2 -4.178 -16.099 -26.921 1 69.39 ? NAS BK7 601 A 1 HETATM 23 O OAT BK7 . . . B 2 6.467 -20.871 -32.792 1 29.15 ? OAT BK7 601 A 1 HETATM 24 C CAU BK7 . . . B 2 5.121 -20.904 -32.771 1 28.48 ? CAU BK7 601 A 1 HETATM 25 C CAV BK7 . . . B 2 0.331 -20.422 -31.49 1 35.67 ? CAV BK7 601 A 1 HETATM 26 C CAX BK7 . . . B 2 -1.038 -20.361 -31.222 1 39.53 ? CAX BK7 601 A 1 HETATM 27 C CAY BK7 . . . B 2 3.109 -20.404 -31.65 1 31.56 ? CAY BK7 601 A 1 HETATM 28 C CAZ BK7 . . . B 2 2.363 -20.923 -32.681 1 33.24 ? CAZ BK7 601 A 1 HETATM 29 C CBC BK7 . . . B 2 -3.936 -18.212 -28.876 1 62.43 ? CBC BK7 601 A 1 HETATM 30 N NBD BK7 . . . B 2 -2.898 -19.554 -30.669 1 45.63 ? NBD BK7 601 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 107 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 497 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 30 #