data_4MXL # _model_server_result.job_id 9jE2XpFY6xETLnwxIQQzWw _model_server_result.datetime_utc '2025-06-22 18:40:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mxl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4MXL # _exptl.entry_id 4MXL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 626.051 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING ZN' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4MXL _cell.length_a 39.754 _cell.length_b 48.233 _cell.length_c 77.819 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MXL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 93 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 93 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id ZN _struct_conn.ptnr2_label_comp_id ZNH _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id ZNH _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.138 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 N4 O4 Zn' _chem_comp.formula_weight 626.051 _chem_comp.id ZNH _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING ZN' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag ZN NA ZNH sing 363 n n ZN NB ZNH sing 364 n n ZN NC ZNH sing 365 n n ZN ND ZNH sing 366 n n CHA C1A ZNH doub 367 n n CHA C4D ZNH sing 368 n n CHA HHA ZNH sing 369 n n CHB C4A ZNH doub 370 n n CHB C1B ZNH sing 371 n n CHB HHB ZNH sing 372 n n CHC C4B ZNH doub 373 n n CHC C1C ZNH sing 374 n n CHC HHC ZNH sing 375 n n CHD C4C ZNH sing 376 n n CHD C1D ZNH doub 377 n n CHD HHD ZNH sing 378 n n NA C1A ZNH sing 379 n n NA C4A ZNH sing 380 n n C1A C2A ZNH sing 381 n n C2A C3A ZNH doub 382 n n C2A CAA ZNH sing 383 n n C3A C4A ZNH sing 384 n n C3A CMA ZNH sing 385 n n CMA HMA1 ZNH sing 386 n n CMA HMA2 ZNH sing 387 n n CMA HMA3 ZNH sing 388 n n CAA CBA ZNH sing 389 n n CAA HAA1 ZNH sing 390 n n CAA HAA2 ZNH sing 391 n n CBA CGA ZNH sing 392 n n CBA HBA1 ZNH sing 393 n n CBA HBA2 ZNH sing 394 n n CGA O1A ZNH doub 395 n n CGA O2A ZNH sing 396 n n O2A H2A ZNH sing 397 n n NB C1B ZNH doub 398 n n NB C4B ZNH sing 399 n n C1B C2B ZNH sing 400 n n C2B C3B ZNH doub 401 n n C2B CMB ZNH sing 402 n n C3B C4B ZNH sing 403 n n C3B CAB ZNH sing 404 n n CMB HMB1 ZNH sing 405 n n CMB HMB2 ZNH sing 406 n n CMB HMB3 ZNH sing 407 n n CAB CBB ZNH doub 408 n n CAB HAB ZNH sing 409 n n CBB HBB1 ZNH sing 410 n n CBB HBB2 ZNH sing 411 n n NC C1C ZNH sing 412 n y NC C4C ZNH sing 413 n y C1C C2C ZNH doub 414 n y C2C C3C ZNH sing 415 n y C2C CMC ZNH sing 416 n n C3C C4C ZNH doub 417 n y C3C CAC ZNH sing 418 n n CMC HMC1 ZNH sing 419 n n CMC HMC2 ZNH sing 420 n n CMC HMC3 ZNH sing 421 n n CAC CBC ZNH doub 422 n n CAC HAC ZNH sing 423 n n CBC HBC1 ZNH sing 424 n n CBC HBC2 ZNH sing 425 n n ND C1D ZNH sing 426 n n ND C4D ZNH doub 427 n n C1D C2D ZNH sing 428 n n C2D C3D ZNH doub 429 n n C2D CMD ZNH sing 430 n n C3D C4D ZNH sing 431 n n C3D CAD ZNH sing 432 n n CMD HMD1 ZNH sing 433 n n CMD HMD2 ZNH sing 434 n n CMD HMD3 ZNH sing 435 n n CAD CBD ZNH sing 436 n n CAD HAD1 ZNH sing 437 n n CAD HAD2 ZNH sing 438 n n CBD CGD ZNH sing 439 n n CBD HBD1 ZNH sing 440 n n CBD HBD2 ZNH sing 441 n n CGD O1D ZNH doub 442 n n CGD O2D ZNH sing 443 n n O2D H2D ZNH sing 444 n n # _atom_sites.entry_id 4MXL _atom_sites.fract_transf_matrix[1][1] 0.025155 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020733 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01285 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZNH A 1 201 155 ZNH ZNH . C 3 HOH A 1 301 1 HOH HOH . C 3 HOH A 2 302 2 HOH HOH . C 3 HOH A 3 303 4 HOH HOH . C 3 HOH A 4 304 5 HOH HOH . C 3 HOH A 5 305 6 HOH HOH . C 3 HOH A 6 306 7 HOH HOH . C 3 HOH A 7 307 8 HOH HOH . C 3 HOH A 8 308 9 HOH HOH . C 3 HOH A 9 309 10 HOH HOH . C 3 HOH A 10 310 11 HOH HOH . C 3 HOH A 11 311 12 HOH HOH . C 3 HOH A 12 312 14 HOH HOH . C 3 HOH A 13 313 15 HOH HOH . C 3 HOH A 14 314 16 HOH HOH . C 3 HOH A 15 315 17 HOH HOH . C 3 HOH A 16 316 20 HOH HOH . C 3 HOH A 17 317 24 HOH HOH . C 3 HOH A 18 318 25 HOH HOH . C 3 HOH A 19 319 26 HOH HOH . C 3 HOH A 20 320 30 HOH HOH . C 3 HOH A 21 321 31 HOH HOH . C 3 HOH A 22 322 32 HOH HOH . C 3 HOH A 23 323 33 HOH HOH . C 3 HOH A 24 324 34 HOH HOH . C 3 HOH A 25 325 35 HOH HOH . C 3 HOH A 26 326 36 HOH HOH . C 3 HOH A 27 327 37 HOH HOH . C 3 HOH A 28 328 39 HOH HOH . C 3 HOH A 29 329 40 HOH HOH . C 3 HOH A 30 330 41 HOH HOH . C 3 HOH A 31 331 42 HOH HOH . C 3 HOH A 32 332 43 HOH HOH . C 3 HOH A 33 333 44 HOH HOH . C 3 HOH A 34 334 45 HOH HOH . C 3 HOH A 35 335 46 HOH HOH . C 3 HOH A 36 336 47 HOH HOH . C 3 HOH A 37 337 48 HOH HOH . C 3 HOH A 38 338 49 HOH HOH . C 3 HOH A 39 339 50 HOH HOH . C 3 HOH A 40 340 52 HOH HOH . C 3 HOH A 41 341 53 HOH HOH . C 3 HOH A 42 342 54 HOH HOH . C 3 HOH A 43 343 55 HOH HOH . C 3 HOH A 44 344 56 HOH HOH . C 3 HOH A 45 345 58 HOH HOH . C 3 HOH A 46 346 59 HOH HOH . C 3 HOH A 47 347 64 HOH HOH . C 3 HOH A 48 348 65 HOH HOH . C 3 HOH A 49 349 66 HOH HOH . C 3 HOH A 50 350 67 HOH HOH . C 3 HOH A 51 351 68 HOH HOH . C 3 HOH A 52 352 69 HOH HOH . C 3 HOH A 53 353 70 HOH HOH . C 3 HOH A 54 354 71 HOH HOH . C 3 HOH A 55 355 72 HOH HOH . C 3 HOH A 56 356 73 HOH HOH . C 3 HOH A 57 357 74 HOH HOH . C 3 HOH A 58 358 75 HOH HOH . C 3 HOH A 59 359 76 HOH HOH . C 3 HOH A 60 360 77 HOH HOH . C 3 HOH A 61 361 78 HOH HOH . C 3 HOH A 62 362 79 HOH HOH . C 3 HOH A 63 363 80 HOH HOH . C 3 HOH A 64 364 81 HOH HOH . C 3 HOH A 65 365 82 HOH HOH . C 3 HOH A 66 366 83 HOH HOH . C 3 HOH A 67 367 84 HOH HOH . C 3 HOH A 68 368 85 HOH HOH . C 3 HOH A 69 369 86 HOH HOH . C 3 HOH A 70 370 87 HOH HOH . C 3 HOH A 71 371 90 HOH HOH . C 3 HOH A 72 372 92 HOH HOH . C 3 HOH A 73 373 93 HOH HOH . C 3 HOH A 74 374 96 HOH HOH . C 3 HOH A 75 375 97 HOH HOH . C 3 HOH A 76 376 98 HOH HOH . C 3 HOH A 77 377 99 HOH HOH . C 3 HOH A 78 378 101 HOH HOH . C 3 HOH A 79 379 102 HOH HOH . C 3 HOH A 80 380 104 HOH HOH . C 3 HOH A 81 381 106 HOH HOH . C 3 HOH A 82 382 107 HOH HOH . C 3 HOH A 83 383 108 HOH HOH . C 3 HOH A 84 384 109 HOH HOH . C 3 HOH A 85 385 110 HOH HOH . C 3 HOH A 86 386 111 HOH HOH . C 3 HOH A 87 387 112 HOH HOH . C 3 HOH A 88 388 113 HOH HOH . C 3 HOH A 89 389 114 HOH HOH . C 3 HOH A 90 390 115 HOH HOH . C 3 HOH A 91 391 116 HOH HOH . C 3 HOH A 92 392 117 HOH HOH . C 3 HOH A 93 393 118 HOH HOH . C 3 HOH A 94 394 119 HOH HOH . C 3 HOH A 95 395 120 HOH HOH . C 3 HOH A 96 396 121 HOH HOH . C 3 HOH A 97 397 122 HOH HOH . C 3 HOH A 98 398 130 HOH HOH . C 3 HOH A 99 399 135 HOH HOH . C 3 HOH A 100 400 136 HOH HOH . C 3 HOH A 101 401 137 HOH HOH . C 3 HOH A 102 402 144 HOH HOH . C 3 HOH A 103 403 145 HOH HOH . C 3 HOH A 104 404 146 HOH HOH . C 3 HOH A 105 405 147 HOH HOH . C 3 HOH A 106 406 149 HOH HOH . C 3 HOH A 107 407 150 HOH HOH . C 3 HOH A 108 408 151 HOH HOH . C 3 HOH A 109 409 152 HOH HOH . C 3 HOH A 110 410 153 HOH HOH . C 3 HOH A 111 411 154 HOH HOH . C 3 HOH A 112 412 155 HOH HOH . C 3 HOH A 113 413 158 HOH HOH . C 3 HOH A 114 414 163 HOH HOH . C 3 HOH A 115 415 167 HOH HOH . C 3 HOH A 116 416 168 HOH HOH . C 3 HOH A 117 417 169 HOH HOH . C 3 HOH A 118 418 170 HOH HOH . C 3 HOH A 119 419 171 HOH HOH . C 3 HOH A 120 420 172 HOH HOH . C 3 HOH A 121 421 173 HOH HOH . C 3 HOH A 122 422 174 HOH HOH . C 3 HOH A 123 423 175 HOH HOH . C 3 HOH A 124 424 176 HOH HOH . C 3 HOH A 125 425 177 HOH HOH . C 3 HOH A 126 426 178 HOH HOH . C 3 HOH A 127 427 179 HOH HOH . C 3 HOH A 128 428 180 HOH HOH . C 3 HOH A 129 429 181 HOH HOH . C 3 HOH A 130 430 182 HOH HOH . C 3 HOH A 131 431 183 HOH HOH . C 3 HOH A 132 432 184 HOH HOH . C 3 HOH A 133 433 185 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 ZN ZN ZNH . . . B 2 -5.836 6.054 -8.408 0.95 19.7 ? ZN ZNH 201 A 1 HETATM 2 C CHA ZNH . . . B 2 -6.287 9.443 -9.257 1 22.75 ? CHA ZNH 201 A 1 HETATM 3 C CHB ZNH . . . B 2 -5.023 6.958 -5.154 1 18.53 ? CHB ZNH 201 A 1 HETATM 4 C CHC ZNH . . . B 2 -4.875 2.728 -7.701 1 19 ? CHC ZNH 201 A 1 HETATM 5 C CHD ZNH . . . B 2 -6.145 5.261 -11.71 1 22.81 ? CHD ZNH 201 A 1 HETATM 6 N NA ZNH . . . B 2 -5.796 7.902 -7.425 1 19.39 ? NA ZNH 201 A 1 HETATM 7 C C1A ZNH . . . B 2 -5.87 9.181 -7.898 1 20.92 ? C1A ZNH 201 A 1 HETATM 8 C C2A ZNH . . . B 2 -5.799 10.097 -6.861 1 21.47 ? C2A ZNH 201 A 1 HETATM 9 C C3A ZNH . . . B 2 -5.333 9.389 -5.705 1 18.25 ? C3A ZNH 201 A 1 HETATM 10 C C4A ZNH . . . B 2 -5.332 7.991 -6.132 1 20.87 ? C4A ZNH 201 A 1 HETATM 11 C CMA ZNH . . . B 2 -5.087 9.966 -4.336 1 20.64 ? CMA ZNH 201 A 1 HETATM 12 C CAA ZNH . . . B 2 -5.958 11.566 -7.033 1 21.53 ? CAA ZNH 201 A 1 HETATM 13 C CBA ZNH . . . B 2 -7.357 11.917 -6.461 1 26.6 ? CBA ZNH 201 A 1 HETATM 14 C CGA ZNH . . . B 2 -8.529 11.12 -7.04 1 27.42 ? CGA ZNH 201 A 1 HETATM 15 O O1A ZNH . . . B 2 -9.126 10.212 -6.365 1 30.09 ? O1A ZNH 201 A 1 HETATM 16 O O2A ZNH . . . B 2 -8.853 11.397 -8.208 1 27.31 ? O2A ZNH 201 A 1 HETATM 17 N NB ZNH . . . B 2 -5.162 4.976 -6.701 1 20.61 ? NB ZNH 201 A 1 HETATM 18 C C1B ZNH . . . B 2 -4.8 5.546 -5.527 1 19.08 ? C1B ZNH 201 A 1 HETATM 19 C C2B ZNH . . . B 2 -4.348 4.597 -4.559 1 16.51 ? C2B ZNH 201 A 1 HETATM 20 C C3B ZNH . . . B 2 -4.316 3.379 -5.306 1 16 ? C3B ZNH 201 A 1 HETATM 21 C C4B ZNH . . . B 2 -4.722 3.731 -6.667 1 18.66 ? C4B ZNH 201 A 1 HETATM 22 C CMB ZNH . . . B 2 -4.128 4.923 -3.104 1 16.39 ? CMB ZNH 201 A 1 HETATM 23 C CAB ZNH . . . B 2 -3.922 2.027 -4.872 1 20.08 ? CAB ZNH 201 A 1 HETATM 24 C CBB ZNH . . . B 2 -2.966 1.774 -4.001 1 19.01 ? CBB ZNH 201 A 1 HETATM 25 N NC ZNH . . . B 2 -5.734 4.217 -9.434 1 20.7 ? NC ZNH 201 A 1 HETATM 26 C C1C ZNH . . . B 2 -5.126 3.059 -9.087 1 18.29 ? C1C ZNH 201 A 1 HETATM 27 C C2C ZNH . . . B 2 -4.985 2.06 -10.189 1 19.87 ? C2C ZNH 201 A 1 HETATM 28 C C3C ZNH . . . B 2 -5.423 2.867 -11.314 1 23.28 ? C3C ZNH 201 A 1 HETATM 29 C C4C ZNH . . . B 2 -5.68 4.19 -10.822 1 23.34 ? C4C ZNH 201 A 1 HETATM 30 C CMC ZNH . . . B 2 -4.681 0.622 -9.954 1 20.49 ? CMC ZNH 201 A 1 HETATM 31 C CAC ZNH . . . B 2 -5.523 2.512 -12.777 1 25.29 ? CAC ZNH 201 A 1 HETATM 32 C CBC ZNH . . . B 2 -5.032 1.347 -13.195 1 29.34 ? CBC ZNH 201 A 1 HETATM 33 N ND ZNH . . . B 2 -6.378 7.144 -10.152 1 22.86 ? ND ZNH 201 A 1 HETATM 34 C C1D ZNH . . . B 2 -6.239 6.662 -11.39 1 24.58 ? C1D ZNH 201 A 1 HETATM 35 C C2D ZNH . . . B 2 -6.499 7.677 -12.393 1 23.18 ? C2D ZNH 201 A 1 HETATM 36 C C3D ZNH . . . B 2 -6.579 8.919 -11.682 1 23.24 ? C3D ZNH 201 A 1 HETATM 37 C C4D ZNH . . . B 2 -6.265 8.506 -10.315 1 21.33 ? C4D ZNH 201 A 1 HETATM 38 C CMD ZNH . . . B 2 -6.692 7.469 -13.866 1 23.95 ? CMD ZNH 201 A 1 HETATM 39 C CAD ZNH . . . B 2 -6.734 10.351 -12.184 1 30.17 ? CAD ZNH 201 A 1 HETATM 40 C CBD ZNH . . . B 2 -5.325 10.852 -12.541 1 32.99 ? CBD ZNH 201 A 1 HETATM 41 C CGD ZNH . . . B 2 -5.404 12.119 -13.353 1 39.44 ? CGD ZNH 201 A 1 HETATM 42 O O1D ZNH . . . B 2 -6.305 12.159 -14.212 1 45.5 ? O1D ZNH 201 A 1 HETATM 43 O O2D ZNH . . . B 2 -4.588 13.05 -13.136 1 44.11 ? O2D ZNH 201 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #