data_4MY1
#
_model_server_result.job_id            wYW8w8Cgzg-J1Drm9sTn2w 
_model_server_result.datetime_utc      '2024-11-09 01:38:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4my1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":500}' 
#
_entry.id    4MY1 
#
_exptl.entry_id    4MY1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              348.206 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'INOSINIC ACID' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         81.13 
_cell.angle_beta          89.95 
_cell.angle_gamma         83.59 
_cell.entry_id            4MY1 
_cell.length_a            83.22 
_cell.length_b            89.391 
_cell.length_c            103.987 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4MY1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L,M,N,O,P,Y,Z,AA,BA 1 1 
E,F,G,H,Q,R,S,T,U,V,W,X,CA,DA,EA,FA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 K N N 
? 2 M N N 
? 2 O N N 
? 2 Q N N 
? 2 T N N 
? 2 U N N 
? 2 W N N 
#
_chem_comp.formula           'C10 H13 N4 O8 P' 
_chem_comp.formula_weight    348.206 
_chem_comp.id                IMP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'INOSINIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P IMP doub 173 n n 
P O2P IMP sing 174 n n 
P O3P IMP sing 175 n n 
P O5' IMP sing 176 n n 
O2P HOP2 IMP sing 177 n n 
O3P HOP3 IMP sing 178 n n 
O5' C5' IMP sing 179 n n 
C5' C4' IMP sing 180 n n 
C5' "H5'1" IMP sing 181 n n 
C5' "H5'2" IMP sing 182 n n 
C4' O4' IMP sing 183 n n 
C4' C3' IMP sing 184 n n 
C4' H4' IMP sing 185 n n 
O4' C1' IMP sing 186 n n 
C3' O3' IMP sing 187 n n 
C3' C2' IMP sing 188 n n 
C3' H3' IMP sing 189 n n 
O3' HO3' IMP sing 190 n n 
C2' O2' IMP sing 191 n n 
C2' C1' IMP sing 192 n n 
C2' H2' IMP sing 193 n n 
O2' HO2' IMP sing 194 n n 
C1' N9 IMP sing 195 n n 
C1' H1' IMP sing 196 n n 
N9 C8 IMP sing 197 n y 
N9 C4 IMP sing 198 n y 
C8 N7 IMP doub 199 n y 
C8 H8 IMP sing 200 n n 
N7 C5 IMP sing 201 n y 
C5 C6 IMP sing 202 n n 
C5 C4 IMP doub 203 n y 
C6 O6 IMP doub 204 n n 
C6 N1 IMP sing 205 n n 
N1 C2 IMP sing 206 n n 
N1 HN1 IMP sing 207 n n 
C2 N3 IMP doub 208 n n 
C2 H2 IMP sing 209 n n 
N3 C4 IMP sing 210 n n 
#
_atom_sites.entry_id                     4MY1 
_atom_sites.fract_transf_matrix[1][1]    0.012016 
_atom_sites.fract_transf_matrix[1][2]    -0.00135 
_atom_sites.fract_transf_matrix[1][3]    0.000202 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011257 
_atom_sites.fract_transf_matrix[2][3]    -0.001766 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009734 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 IMP A 1 500 500 IMP IMP . 
J 3 P68 A 1 501 501 P68 P68 . 
K 2 IMP B 1 500 500 IMP IMP . 
L 3 P68 B 1 501 501 P68 P68 . 
M 2 IMP C 1 500 500 IMP IMP . 
N 3 P68 C 1 501 501 P68 P68 . 
O 2 IMP D 1 500 500 IMP IMP . 
P 3 P68 D 1 501 501 P68 P68 . 
Q 2 IMP E 1 501 500 IMP IMP . 
R 3 P68 E 1 502 501 P68 P68 . 
S 3 P68 E 1 503 501 P68 P68 . 
T 2 IMP F 1 500 500 IMP IMP . 
U 2 IMP G 1 500 500 IMP IMP . 
V 3 P68 G 1 501 501 P68 P68 . 
W 2 IMP H 1 500 500 IMP IMP . 
X 3 P68 H 1 501 501 P68 P68 . 
Y 4 HOH A 1 601 8 HOH HOH . 
Y 4 HOH A 2 602 19 HOH HOH . 
Y 4 HOH A 3 603 21 HOH HOH . 
Y 4 HOH A 4 604 26 HOH HOH . 
Y 4 HOH A 5 605 34 HOH HOH . 
Y 4 HOH A 6 606 39 HOH HOH . 
Y 4 HOH A 7 607 41 HOH HOH . 
Y 4 HOH A 8 608 47 HOH HOH . 
Y 4 HOH A 9 609 50 HOH HOH . 
Y 4 HOH A 10 610 62 HOH HOH . 
Y 4 HOH A 11 611 63 HOH HOH . 
Y 4 HOH A 12 612 67 HOH HOH . 
Y 4 HOH A 13 613 72 HOH HOH . 
Y 4 HOH A 14 614 85 HOH HOH . 
Y 4 HOH A 15 615 88 HOH HOH . 
Y 4 HOH A 16 616 92 HOH HOH . 
Y 4 HOH A 17 617 97 HOH HOH . 
Y 4 HOH A 18 618 98 HOH HOH . 
Y 4 HOH A 19 619 100 HOH HOH . 
Y 4 HOH A 20 620 104 HOH HOH . 
Y 4 HOH A 21 621 107 HOH HOH . 
Z 4 HOH B 1 601 5 HOH HOH . 
Z 4 HOH B 2 602 10 HOH HOH . 
Z 4 HOH B 3 603 12 HOH HOH . 
Z 4 HOH B 4 604 13 HOH HOH . 
Z 4 HOH B 5 605 29 HOH HOH . 
Z 4 HOH B 6 606 32 HOH HOH . 
Z 4 HOH B 7 607 36 HOH HOH . 
Z 4 HOH B 8 608 37 HOH HOH . 
Z 4 HOH B 9 609 52 HOH HOH . 
Z 4 HOH B 10 610 53 HOH HOH . 
Z 4 HOH B 11 611 54 HOH HOH . 
Z 4 HOH B 12 612 58 HOH HOH . 
Z 4 HOH B 13 613 59 HOH HOH . 
Z 4 HOH B 14 614 61 HOH HOH . 
Z 4 HOH B 15 615 65 HOH HOH . 
Z 4 HOH B 16 616 66 HOH HOH . 
Z 4 HOH B 17 617 71 HOH HOH . 
Z 4 HOH B 18 618 84 HOH HOH . 
Z 4 HOH B 19 619 103 HOH HOH . 
Z 4 HOH B 20 620 116 HOH HOH . 
AA 4 HOH C 1 601 1 HOH HOH . 
AA 4 HOH C 2 602 3 HOH HOH . 
AA 4 HOH C 3 603 18 HOH HOH . 
AA 4 HOH C 4 604 22 HOH HOH . 
AA 4 HOH C 5 605 24 HOH HOH . 
AA 4 HOH C 6 606 27 HOH HOH . 
AA 4 HOH C 7 607 28 HOH HOH . 
AA 4 HOH C 8 608 30 HOH HOH . 
AA 4 HOH C 9 609 38 HOH HOH . 
AA 4 HOH C 10 610 43 HOH HOH . 
AA 4 HOH C 11 611 45 HOH HOH . 
AA 4 HOH C 12 612 57 HOH HOH . 
AA 4 HOH C 13 613 75 HOH HOH . 
AA 4 HOH C 14 614 77 HOH HOH . 
AA 4 HOH C 15 615 80 HOH HOH . 
AA 4 HOH C 16 616 81 HOH HOH . 
AA 4 HOH C 17 617 94 HOH HOH . 
AA 4 HOH C 18 618 96 HOH HOH . 
AA 4 HOH C 19 619 102 HOH HOH . 
AA 4 HOH C 20 620 109 HOH HOH . 
AA 4 HOH C 21 621 111 HOH HOH . 
BA 4 HOH D 1 601 2 HOH HOH . 
BA 4 HOH D 2 602 14 HOH HOH . 
BA 4 HOH D 3 603 15 HOH HOH . 
BA 4 HOH D 4 604 16 HOH HOH . 
BA 4 HOH D 5 605 31 HOH HOH . 
BA 4 HOH D 6 606 35 HOH HOH . 
BA 4 HOH D 7 607 46 HOH HOH . 
BA 4 HOH D 8 608 73 HOH HOH . 
BA 4 HOH D 9 609 76 HOH HOH . 
BA 4 HOH D 10 610 78 HOH HOH . 
BA 4 HOH D 11 611 95 HOH HOH . 
BA 4 HOH D 12 612 99 HOH HOH . 
BA 4 HOH D 13 613 115 HOH HOH . 
BA 4 HOH D 14 614 117 HOH HOH . 
CA 4 HOH E 1 601 20 HOH HOH . 
CA 4 HOH E 2 602 25 HOH HOH . 
CA 4 HOH E 3 603 44 HOH HOH . 
CA 4 HOH E 4 604 51 HOH HOH . 
CA 4 HOH E 5 605 56 HOH HOH . 
CA 4 HOH E 6 606 60 HOH HOH . 
CA 4 HOH E 7 607 69 HOH HOH . 
CA 4 HOH E 8 608 89 HOH HOH . 
CA 4 HOH E 9 609 91 HOH HOH . 
DA 4 HOH F 1 601 40 HOH HOH . 
DA 4 HOH F 2 602 49 HOH HOH . 
DA 4 HOH F 3 603 74 HOH HOH . 
DA 4 HOH F 4 604 82 HOH HOH . 
DA 4 HOH F 5 605 106 HOH HOH . 
DA 4 HOH F 6 606 108 HOH HOH . 
DA 4 HOH F 7 607 113 HOH HOH . 
EA 4 HOH G 1 601 9 HOH HOH . 
EA 4 HOH G 2 602 23 HOH HOH . 
EA 4 HOH G 3 603 48 HOH HOH . 
EA 4 HOH G 4 604 64 HOH HOH . 
EA 4 HOH G 5 605 70 HOH HOH . 
EA 4 HOH G 6 606 79 HOH HOH . 
EA 4 HOH G 7 607 83 HOH HOH . 
EA 4 HOH G 8 608 90 HOH HOH . 
EA 4 HOH G 9 609 110 HOH HOH . 
EA 4 HOH G 10 610 112 HOH HOH . 
FA 4 HOH H 1 601 4 HOH HOH . 
FA 4 HOH H 2 602 6 HOH HOH . 
FA 4 HOH H 3 603 7 HOH HOH . 
FA 4 HOH H 4 604 11 HOH HOH . 
FA 4 HOH H 5 605 17 HOH HOH . 
FA 4 HOH H 6 606 33 HOH HOH . 
FA 4 HOH H 7 607 42 HOH HOH . 
FA 4 HOH H 8 608 55 HOH HOH . 
FA 4 HOH H 9 609 68 HOH HOH . 
FA 4 HOH H 10 610 86 HOH HOH . 
FA 4 HOH H 11 611 87 HOH HOH . 
FA 4 HOH H 12 612 93 HOH HOH . 
FA 4 HOH H 13 613 101 HOH HOH . 
FA 4 HOH H 14 614 105 HOH HOH . 
FA 4 HOH H 15 615 114 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P IMP . . . O 2 -16.093 9.185 -13.157 1 42.99 ? P IMP 500 D 1 
HETATM 2 O O1P IMP . . . O 2 -15.421 9.28 -14.485 1 43.13 ? O1P IMP 500 D 1 
HETATM 3 O O2P IMP . . . O 2 -15.312 8.586 -12.033 1 43 ? O2P IMP 500 D 1 
HETATM 4 O O3P IMP . . . O 2 -17.337 8.371 -13.373 1 43.13 ? O3P IMP 500 D 1 
HETATM 5 O O5' IMP . . . O 2 -16.415 10.663 -12.678 1 48.37 ? O5' IMP 500 D 1 
HETATM 6 C C5' IMP . . . O 2 -17.335 11.492 -13.362 1 48.43 ? C5' IMP 500 D 1 
HETATM 7 C C4' IMP . . . O 2 -17.619 12.714 -12.53 1 48.61 ? C4' IMP 500 D 1 
HETATM 8 O O4' IMP . . . O 2 -16.427 13.52 -12.377 1 48.78 ? O4' IMP 500 D 1 
HETATM 9 C C3' IMP . . . O 2 -18.638 13.693 -13.069 1 48.66 ? C3' IMP 500 D 1 
HETATM 10 O O3' IMP . . . O 2 -19.96 13.244 -12.877 1 48.62 ? O3' IMP 500 D 1 
HETATM 11 C C2' IMP . . . O 2 -18.324 14.96 -12.281 1 48.84 ? C2' IMP 500 D 1 
HETATM 12 O O2' IMP . . . O 2 -18.916 14.894 -10.991 1 48.79 ? O2' IMP 500 D 1 
HETATM 13 C C1' IMP . . . O 2 -16.803 14.864 -12.12 1 48.99 ? C1' IMP 500 D 1 
HETATM 14 N N9 IMP . . . O 2 -16.088 15.746 -13.06 1 49.41 ? N9 IMP 500 D 1 
HETATM 15 C C8 IMP . . . O 2 -16.34 15.941 -14.399 1 49.53 ? C8 IMP 500 D 1 
HETATM 16 N N7 IMP . . . O 2 -15.405 16.792 -14.887 1 49.62 ? N7 IMP 500 D 1 
HETATM 17 C C5 IMP . . . O 2 -14.559 17.146 -13.889 1 49.68 ? C5 IMP 500 D 1 
HETATM 18 C C6 IMP . . . O 2 -13.441 17.983 -13.84 1 49.81 ? C6 IMP 500 D 1 
HETATM 19 O O6 IMP . . . O 2 -12.848 18.266 -14.877 1 49.85 ? O6 IMP 500 D 1 
HETATM 20 N N1 IMP . . . O 2 -12.752 18.143 -12.656 1 49.84 ? N1 IMP 500 D 1 
HETATM 21 C C2 IMP . . . O 2 -13.189 17.469 -11.532 1 49.81 ? C2 IMP 500 D 1 
HETATM 22 N N3 IMP . . . O 2 -14.296 16.639 -11.592 1 49.7 ? N3 IMP 500 D 1 
HETATM 23 C C4 IMP . . . O 2 -14.974 16.482 -12.746 1 49.57 ? C4 IMP 500 D 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    40 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           23 
#