data_4MYW # _model_server_result.job_id 4XG-MYeWZ2wCe4BW-_iJvQ _model_server_result.datetime_utc '2024-11-07 03:22:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4myw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":503}' # _entry.id 4MYW # _exptl.entry_id 4MYW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4MYW _cell.length_a 53.337 _cell.length_b 170.857 _cell.length_c 192.251 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MYW _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,I,J 1 1 C,D,F,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 E 1 NAG A 501 NAG 3 n E NAG 2 E 2 NAG A 502 NAG 3 n F NAG 1 F 1 NAG C 501 NAG 3 n F NAG 2 F 2 NAG C 502 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 69 A CYS 66 1_555 A SG CYS 192 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 109 A CYS 106 1_555 A SG CYS 205 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 121 A CYS 118 1_555 A SG CYS 130 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 B SG CYS 36 B CYS 51 1_555 B SG CYS 109 B CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 B SG CYS 157 B CYS 172 1_555 B SG CYS 211 B CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf6 B SG CYS 254 B CYS 269 1_555 B SG CYS 301 B CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf7 C SG CYS 69 C CYS 66 1_555 C SG CYS 192 C CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 C SG CYS 109 C CYS 106 1_555 C SG CYS 205 C CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf9 C SG CYS 121 C CYS 118 1_555 C SG CYS 130 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf10 D SG CYS 36 D CYS 51 1_555 D SG CYS 109 D CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf11 D SG CYS 157 D CYS 172 1_555 D SG CYS 211 D CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf12 D SG CYS 254 D CYS 269 1_555 D SG CYS 301 D CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? covale ? covale1 A ND2 ASN 97 A ASN 94 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale2 A ND2 ASN 124 A ASN 121 1_555 G C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale3 C ND2 ASN 97 C ASN 94 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 C ND2 ASN 124 C ASN 121 1_555 H C1 NAG . C NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale6 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4MYW _atom_sites.fract_transf_matrix[1][1] 0.018749 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005853 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005202 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAG A 1 503 503 NAG NAG . H 4 NAG C 1 503 503 NAG NAG . I 5 HOH A 1 601 1 HOH HOH . I 5 HOH A 2 602 3 HOH HOH . I 5 HOH A 3 603 5 HOH HOH . I 5 HOH A 4 604 11 HOH HOH . I 5 HOH A 5 605 12 HOH HOH . I 5 HOH A 6 606 21 HOH HOH . I 5 HOH A 7 607 24 HOH HOH . I 5 HOH A 8 608 38 HOH HOH . I 5 HOH A 9 609 42 HOH HOH . I 5 HOH A 10 610 45 HOH HOH . I 5 HOH A 11 611 46 HOH HOH . I 5 HOH A 12 612 47 HOH HOH . I 5 HOH A 13 613 56 HOH HOH . I 5 HOH A 14 614 57 HOH HOH . I 5 HOH A 15 615 64 HOH HOH . I 5 HOH A 16 616 66 HOH HOH . I 5 HOH A 17 617 70 HOH HOH . I 5 HOH A 18 618 74 HOH HOH . I 5 HOH A 19 619 79 HOH HOH . I 5 HOH A 20 620 84 HOH HOH . J 5 HOH B 1 401 6 HOH HOH . J 5 HOH B 2 402 9 HOH HOH . J 5 HOH B 3 403 16 HOH HOH . J 5 HOH B 4 404 29 HOH HOH . J 5 HOH B 5 405 35 HOH HOH . J 5 HOH B 6 406 39 HOH HOH . J 5 HOH B 7 407 44 HOH HOH . J 5 HOH B 8 408 55 HOH HOH . J 5 HOH B 9 409 58 HOH HOH . J 5 HOH B 10 410 62 HOH HOH . J 5 HOH B 11 411 67 HOH HOH . J 5 HOH B 12 412 72 HOH HOH . J 5 HOH B 13 413 75 HOH HOH . K 5 HOH C 1 601 2 HOH HOH . K 5 HOH C 2 602 8 HOH HOH . K 5 HOH C 3 603 17 HOH HOH . K 5 HOH C 4 604 48 HOH HOH . K 5 HOH C 5 605 49 HOH HOH . K 5 HOH C 6 606 50 HOH HOH . K 5 HOH C 7 607 60 HOH HOH . K 5 HOH C 8 608 71 HOH HOH . K 5 HOH C 9 609 78 HOH HOH . K 5 HOH C 10 610 88 HOH HOH . L 5 HOH D 1 401 7 HOH HOH . L 5 HOH D 2 402 15 HOH HOH . L 5 HOH D 3 403 19 HOH HOH . L 5 HOH D 4 404 25 HOH HOH . L 5 HOH D 5 405 26 HOH HOH . L 5 HOH D 6 406 27 HOH HOH . L 5 HOH D 7 407 65 HOH HOH . L 5 HOH D 8 408 68 HOH HOH . L 5 HOH D 9 409 69 HOH HOH . L 5 HOH D 10 410 81 HOH HOH . L 5 HOH D 11 411 82 HOH HOH . L 5 HOH D 12 412 83 HOH HOH . L 5 HOH D 13 413 85 HOH HOH . L 5 HOH D 14 414 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . H 4 -45.762 63.046 28.852 1 132.33 ? C1 NAG 503 C 1 HETATM 2 C C2 NAG . . . H 4 -47.028 63.157 27.992 1 134.01 ? C2 NAG 503 C 1 HETATM 3 C C3 NAG . . . H 4 -48.3 63.397 28.807 1 136.58 ? C3 NAG 503 C 1 HETATM 4 C C4 NAG . . . H 4 -48.311 62.561 30.078 1 145.48 ? C4 NAG 503 C 1 HETATM 5 C C5 NAG . . . H 4 -47.023 62.815 30.847 1 141.69 ? C5 NAG 503 C 1 HETATM 6 C C6 NAG . . . H 4 -47.041 62.111 32.199 1 139.27 ? C6 NAG 503 C 1 HETATM 7 C C7 NAG . . . H 4 -46.855 64.112 25.721 1 139.39 ? C7 NAG 503 C 1 HETATM 8 C C8 NAG . . . H 4 -47.182 65.339 24.918 1 115.18 ? C8 NAG 503 C 1 HETATM 9 N N2 NAG . . . H 4 -46.86 64.253 27.049 1 142.5 ? N2 NAG 503 C 1 HETATM 10 O O3 NAG . . . H 4 -49.442 63.092 28.038 1 131.57 ? O3 NAG 503 C 1 HETATM 11 O O4 NAG . . . H 4 -49.437 62.878 30.87 1 146.04 ? O4 NAG 503 C 1 HETATM 12 O O5 NAG . . . H 4 -45.943 62.347 30.071 1 136.5 ? O5 NAG 503 C 1 HETATM 13 O O6 NAG . . . H 4 -47.502 60.79 32.023 1 144.33 ? O6 NAG 503 C 1 HETATM 14 O O7 NAG . . . H 4 -46.597 63.053 25.152 1 138.75 ? O7 NAG 503 C 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 43 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 14 #