data_4MZ1 # _model_server_result.job_id jc-p5habhxLvHPnQUOl1kw _model_server_result.datetime_utc '2024-11-25 13:39:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mz1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":506}' # _entry.id 4MZ1 # _exptl.entry_id 4MZ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4MZ1 _cell.length_a 118.062 _cell.length_b 118.062 _cell.length_c 435.16 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MZ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 PISA tetrameric 4 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,Y 1 1,2,3,4 B,K,L,M,N,O,P,Q,Z 2 1,5,6,7 C,R,S,T,U,V,W,X,AA 3 1,5,6,7 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 118.062 118.062 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 118.062 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 118.062 0 5 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 6 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 7 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 I N N ? 6 J N N ? 6 N N N ? 6 Q N N ? 6 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 196 A GLY 296 1_555 F K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.06 ? metalc ? metalc2 A O GLY 198 A GLY 298 1_555 F K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc3 A O CYS 201 A CYS 301 1_555 F K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc4 B O GLY 196 B GLY 296 1_555 M K K . B K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.952 ? metalc ? metalc5 B O GLY 198 B GLY 298 1_555 M K K . B K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc6 B O CYS 201 B CYS 301 1_555 M K K . B K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc7 C O GLY 196 C GLY 296 1_555 U K K . C K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.964 ? metalc ? metalc8 C O GLY 198 C GLY 298 1_555 U K K . C K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? metalc ? metalc9 C O CYS 201 C CYS 301 1_555 U K K . C K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 350 n n P O2 PO4 sing 351 n n P O3 PO4 sing 352 n n P O4 PO4 sing 353 n n # _atom_sites.entry_id 4MZ1 _atom_sites.fract_transf_matrix[1][1] 0.00847 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00847 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002298 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 IMP A 1 500 500 IMP IMP . E 3 2F1 A 1 501 501 2F1 PTW . F 4 K A 1 502 502 K K . G 5 SO4 A 1 503 503 SO4 SO4 . H 6 PO4 A 1 504 504 PO4 PO4 . I 6 PO4 A 1 505 505 PO4 PO4 . J 6 PO4 A 1 506 506 PO4 PO4 . K 2 IMP B 1 500 500 IMP IMP . L 3 2F1 B 1 501 501 2F1 PTW . M 4 K B 1 502 502 K K . N 6 PO4 B 1 503 503 PO4 PO4 . O 5 SO4 B 1 504 504 SO4 SO4 . P 5 SO4 B 1 505 505 SO4 SO4 . Q 6 PO4 B 1 506 506 PO4 PO4 . R 7 ACY C 1 501 507 ACY ACY . S 2 IMP C 1 502 500 IMP IMP . T 3 2F1 C 1 503 501 2F1 PTW . U 4 K C 1 504 502 K K . V 5 SO4 C 1 505 503 SO4 SO4 . W 6 PO4 C 1 506 504 PO4 PO4 . X 7 ACY C 1 507 505 ACY ACY . Y 8 HOH A 1 601 7 HOH HOH . Y 8 HOH A 2 602 9 HOH HOH . Y 8 HOH A 3 603 11 HOH HOH . Y 8 HOH A 4 604 12 HOH HOH . Y 8 HOH A 5 605 18 HOH HOH . Y 8 HOH A 6 606 19 HOH HOH . Y 8 HOH A 7 607 25 HOH HOH . Y 8 HOH A 8 608 28 HOH HOH . Y 8 HOH A 9 609 31 HOH HOH . Y 8 HOH A 10 610 35 HOH HOH . Y 8 HOH A 11 611 38 HOH HOH . Y 8 HOH A 12 612 40 HOH HOH . Y 8 HOH A 13 613 45 HOH HOH . Y 8 HOH A 14 614 46 HOH HOH . Y 8 HOH A 15 615 51 HOH HOH . Y 8 HOH A 16 616 52 HOH HOH . Y 8 HOH A 17 617 55 HOH HOH . Y 8 HOH A 18 618 59 HOH HOH . Y 8 HOH A 19 619 64 HOH HOH . Y 8 HOH A 20 620 67 HOH HOH . Y 8 HOH A 21 621 69 HOH HOH . Y 8 HOH A 22 622 71 HOH HOH . Y 8 HOH A 23 623 73 HOH HOH . Y 8 HOH A 24 624 77 HOH HOH . Y 8 HOH A 25 625 81 HOH HOH . Y 8 HOH A 26 626 82 HOH HOH . Y 8 HOH A 27 627 86 HOH HOH . Y 8 HOH A 28 628 88 HOH HOH . Y 8 HOH A 29 629 90 HOH HOH . Y 8 HOH A 30 630 92 HOH HOH . Y 8 HOH A 31 631 93 HOH HOH . Y 8 HOH A 32 632 95 HOH HOH . Y 8 HOH A 33 633 96 HOH HOH . Y 8 HOH A 34 634 104 HOH HOH . Y 8 HOH A 35 635 106 HOH HOH . Y 8 HOH A 36 636 107 HOH HOH . Y 8 HOH A 37 637 108 HOH HOH . Y 8 HOH A 38 638 113 HOH HOH . Y 8 HOH A 39 639 115 HOH HOH . Y 8 HOH A 40 640 119 HOH HOH . Y 8 HOH A 41 641 121 HOH HOH . Y 8 HOH A 42 642 126 HOH HOH . Y 8 HOH A 43 643 127 HOH HOH . Y 8 HOH A 44 644 131 HOH HOH . Y 8 HOH A 45 645 133 HOH HOH . Y 8 HOH A 46 646 134 HOH HOH . Y 8 HOH A 47 647 138 HOH HOH . Y 8 HOH A 48 648 139 HOH HOH . Y 8 HOH A 49 649 141 HOH HOH . Y 8 HOH A 50 650 143 HOH HOH . Y 8 HOH A 51 651 147 HOH HOH . Y 8 HOH A 52 652 150 HOH HOH . Y 8 HOH A 53 653 153 HOH HOH . Y 8 HOH A 54 654 166 HOH HOH . Y 8 HOH A 55 655 167 HOH HOH . Y 8 HOH A 56 656 168 HOH HOH . Y 8 HOH A 57 657 169 HOH HOH . Y 8 HOH A 58 658 170 HOH HOH . Y 8 HOH A 59 659 171 HOH HOH . Y 8 HOH A 60 660 172 HOH HOH . Y 8 HOH A 61 661 173 HOH HOH . Y 8 HOH A 62 662 175 HOH HOH . Y 8 HOH A 63 663 180 HOH HOH . Y 8 HOH A 64 664 181 HOH HOH . Y 8 HOH A 65 665 182 HOH HOH . Y 8 HOH A 66 666 196 HOH HOH . Y 8 HOH A 67 667 198 HOH HOH . Y 8 HOH A 68 668 199 HOH HOH . Y 8 HOH A 69 669 200 HOH HOH . Z 8 HOH B 1 601 1 HOH HOH . Z 8 HOH B 2 602 3 HOH HOH . Z 8 HOH B 3 603 8 HOH HOH . Z 8 HOH B 4 604 10 HOH HOH . Z 8 HOH B 5 605 14 HOH HOH . Z 8 HOH B 6 606 16 HOH HOH . Z 8 HOH B 7 607 17 HOH HOH . Z 8 HOH B 8 608 20 HOH HOH . Z 8 HOH B 9 609 22 HOH HOH . Z 8 HOH B 10 610 23 HOH HOH . Z 8 HOH B 11 611 24 HOH HOH . Z 8 HOH B 12 612 26 HOH HOH . Z 8 HOH B 13 613 30 HOH HOH . Z 8 HOH B 14 614 33 HOH HOH . Z 8 HOH B 15 615 34 HOH HOH . Z 8 HOH B 16 616 41 HOH HOH . Z 8 HOH B 17 617 44 HOH HOH . Z 8 HOH B 18 618 48 HOH HOH . Z 8 HOH B 19 619 49 HOH HOH . Z 8 HOH B 20 620 53 HOH HOH . Z 8 HOH B 21 621 56 HOH HOH . Z 8 HOH B 22 622 57 HOH HOH . Z 8 HOH B 23 623 58 HOH HOH . Z 8 HOH B 24 624 60 HOH HOH . Z 8 HOH B 25 625 62 HOH HOH . Z 8 HOH B 26 626 65 HOH HOH . Z 8 HOH B 27 627 68 HOH HOH . Z 8 HOH B 28 628 70 HOH HOH . Z 8 HOH B 29 629 74 HOH HOH . Z 8 HOH B 30 630 78 HOH HOH . Z 8 HOH B 31 631 79 HOH HOH . Z 8 HOH B 32 632 83 HOH HOH . Z 8 HOH B 33 633 84 HOH HOH . Z 8 HOH B 34 634 85 HOH HOH . Z 8 HOH B 35 635 91 HOH HOH . Z 8 HOH B 36 636 94 HOH HOH . Z 8 HOH B 37 637 97 HOH HOH . Z 8 HOH B 38 638 101 HOH HOH . Z 8 HOH B 39 639 103 HOH HOH . Z 8 HOH B 40 640 109 HOH HOH . Z 8 HOH B 41 641 110 HOH HOH . Z 8 HOH B 42 642 117 HOH HOH . Z 8 HOH B 43 643 120 HOH HOH . Z 8 HOH B 44 644 123 HOH HOH . Z 8 HOH B 45 645 129 HOH HOH . Z 8 HOH B 46 646 135 HOH HOH . Z 8 HOH B 47 647 144 HOH HOH . Z 8 HOH B 48 648 148 HOH HOH . Z 8 HOH B 49 649 149 HOH HOH . Z 8 HOH B 50 650 152 HOH HOH . Z 8 HOH B 51 651 157 HOH HOH . Z 8 HOH B 52 652 158 HOH HOH . Z 8 HOH B 53 653 176 HOH HOH . Z 8 HOH B 54 654 177 HOH HOH . Z 8 HOH B 55 655 178 HOH HOH . Z 8 HOH B 56 656 183 HOH HOH . Z 8 HOH B 57 657 184 HOH HOH . Z 8 HOH B 58 658 185 HOH HOH . Z 8 HOH B 59 659 186 HOH HOH . Z 8 HOH B 60 660 189 HOH HOH . Z 8 HOH B 61 661 190 HOH HOH . Z 8 HOH B 62 662 191 HOH HOH . Z 8 HOH B 63 663 201 HOH HOH . Z 8 HOH B 64 664 202 HOH HOH . AA 8 HOH C 1 601 2 HOH HOH . AA 8 HOH C 2 602 4 HOH HOH . AA 8 HOH C 3 603 5 HOH HOH . AA 8 HOH C 4 604 6 HOH HOH . AA 8 HOH C 5 605 13 HOH HOH . AA 8 HOH C 6 606 15 HOH HOH . AA 8 HOH C 7 607 21 HOH HOH . AA 8 HOH C 8 608 27 HOH HOH . AA 8 HOH C 9 609 29 HOH HOH . AA 8 HOH C 10 610 32 HOH HOH . AA 8 HOH C 11 611 36 HOH HOH . AA 8 HOH C 12 612 37 HOH HOH . AA 8 HOH C 13 613 39 HOH HOH . AA 8 HOH C 14 614 42 HOH HOH . AA 8 HOH C 15 615 43 HOH HOH . AA 8 HOH C 16 616 47 HOH HOH . AA 8 HOH C 17 617 50 HOH HOH . AA 8 HOH C 18 618 54 HOH HOH . AA 8 HOH C 19 619 61 HOH HOH . AA 8 HOH C 20 620 63 HOH HOH . AA 8 HOH C 21 621 66 HOH HOH . AA 8 HOH C 22 622 72 HOH HOH . AA 8 HOH C 23 623 75 HOH HOH . AA 8 HOH C 24 624 76 HOH HOH . AA 8 HOH C 25 625 80 HOH HOH . AA 8 HOH C 26 626 87 HOH HOH . AA 8 HOH C 27 627 89 HOH HOH . AA 8 HOH C 28 628 98 HOH HOH . AA 8 HOH C 29 629 99 HOH HOH . AA 8 HOH C 30 630 100 HOH HOH . AA 8 HOH C 31 631 102 HOH HOH . AA 8 HOH C 32 632 105 HOH HOH . AA 8 HOH C 33 633 111 HOH HOH . AA 8 HOH C 34 634 112 HOH HOH . AA 8 HOH C 35 635 114 HOH HOH . AA 8 HOH C 36 636 116 HOH HOH . AA 8 HOH C 37 637 118 HOH HOH . AA 8 HOH C 38 638 122 HOH HOH . AA 8 HOH C 39 639 124 HOH HOH . AA 8 HOH C 40 640 125 HOH HOH . AA 8 HOH C 41 641 128 HOH HOH . AA 8 HOH C 42 642 130 HOH HOH . AA 8 HOH C 43 643 132 HOH HOH . AA 8 HOH C 44 644 136 HOH HOH . AA 8 HOH C 45 645 137 HOH HOH . AA 8 HOH C 46 646 140 HOH HOH . AA 8 HOH C 47 647 142 HOH HOH . AA 8 HOH C 48 648 145 HOH HOH . AA 8 HOH C 49 649 146 HOH HOH . AA 8 HOH C 50 650 151 HOH HOH . AA 8 HOH C 51 651 154 HOH HOH . AA 8 HOH C 52 652 155 HOH HOH . AA 8 HOH C 53 653 156 HOH HOH . AA 8 HOH C 54 654 159 HOH HOH . AA 8 HOH C 55 655 160 HOH HOH . AA 8 HOH C 56 656 161 HOH HOH . AA 8 HOH C 57 657 162 HOH HOH . AA 8 HOH C 58 658 163 HOH HOH . AA 8 HOH C 59 659 164 HOH HOH . AA 8 HOH C 60 660 165 HOH HOH . AA 8 HOH C 61 661 174 HOH HOH . AA 8 HOH C 62 662 179 HOH HOH . AA 8 HOH C 63 663 187 HOH HOH . AA 8 HOH C 64 664 188 HOH HOH . AA 8 HOH C 65 665 192 HOH HOH . AA 8 HOH C 66 666 193 HOH HOH . AA 8 HOH C 67 667 194 HOH HOH . AA 8 HOH C 68 668 195 HOH HOH . AA 8 HOH C 69 669 197 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . W 6 3.033 13.616 63.574 1 78.98 ? P PO4 506 C 1 HETATM 2 O O1 PO4 . . . W 6 3.385 13.424 62.116 1 83.46 ? O1 PO4 506 C 1 HETATM 3 O O2 PO4 . . . W 6 2.386 14.966 63.766 1 76.76 ? O2 PO4 506 C 1 HETATM 4 O O3 PO4 . . . W 6 2.048 12.558 64.011 1 79.11 ? O3 PO4 506 C 1 HETATM 5 O O4 PO4 . . . W 6 4.307 13.498 64.389 1 79.13 ? O4 PO4 506 C 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #