data_4MZC # _model_server_result.job_id ivEHKnB-yseoKhR2jVVQUw _model_server_result.datetime_utc '2024-11-13 04:14:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4mzc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 4MZC # _exptl.entry_id 4MZC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4MZC _cell.length_a 47.971 _cell.length_b 47.971 _cell.length_c 82.473 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MZC _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 29 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 29 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 32 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 32 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id A _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.226 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 237 n n C1 H11 MPD sing 238 n n C1 H12 MPD sing 239 n n C1 H13 MPD sing 240 n n C2 O2 MPD sing 241 n n C2 CM MPD sing 242 n n C2 C3 MPD sing 243 n n O2 HO2 MPD sing 244 n n CM HM1 MPD sing 245 n n CM HM2 MPD sing 246 n n CM HM3 MPD sing 247 n n C3 C4 MPD sing 248 n n C3 H31 MPD sing 249 n n C3 H32 MPD sing 250 n n C4 O4 MPD sing 251 n n C4 C5 MPD sing 252 n n C4 H4 MPD sing 253 n n O4 HO4 MPD sing 254 n n C5 H51 MPD sing 255 n n C5 H52 MPD sing 256 n n C5 H53 MPD sing 257 n n # _atom_sites.entry_id 4MZC _atom_sites.fract_transf_matrix[1][1] 0.020846 _atom_sites.fract_transf_matrix[1][2] 0.012035 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024071 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012125 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPO A 1 201 201 MPO MPO . C 3 MPD A 1 202 202 MPD MPD . D 4 HOH A 1 301 301 HOH HOH . D 4 HOH A 2 302 302 HOH HOH . D 4 HOH A 3 303 303 HOH HOH . D 4 HOH A 4 304 304 HOH HOH . D 4 HOH A 5 305 305 HOH HOH . D 4 HOH A 6 306 306 HOH HOH . D 4 HOH A 7 307 307 HOH HOH . D 4 HOH A 8 308 308 HOH HOH . D 4 HOH A 9 309 309 HOH HOH . D 4 HOH A 10 310 310 HOH HOH . D 4 HOH A 11 311 311 HOH HOH . D 4 HOH A 12 312 312 HOH HOH . D 4 HOH A 13 313 313 HOH HOH . D 4 HOH A 14 314 314 HOH HOH . D 4 HOH A 15 315 315 HOH HOH . D 4 HOH A 16 316 316 HOH HOH . D 4 HOH A 17 317 317 HOH HOH . D 4 HOH A 18 318 318 HOH HOH . D 4 HOH A 19 319 319 HOH HOH . D 4 HOH A 20 320 320 HOH HOH . D 4 HOH A 21 321 321 HOH HOH . D 4 HOH A 22 322 322 HOH HOH . D 4 HOH A 23 323 323 HOH HOH . D 4 HOH A 24 324 324 HOH HOH . D 4 HOH A 25 325 325 HOH HOH . D 4 HOH A 26 326 326 HOH HOH . D 4 HOH A 27 327 327 HOH HOH . D 4 HOH A 28 328 328 HOH HOH . D 4 HOH A 29 329 329 HOH HOH . D 4 HOH A 30 330 330 HOH HOH . D 4 HOH A 31 331 331 HOH HOH . D 4 HOH A 32 332 332 HOH HOH . D 4 HOH A 33 333 333 HOH HOH . D 4 HOH A 34 334 334 HOH HOH . D 4 HOH A 35 335 335 HOH HOH . D 4 HOH A 36 336 336 HOH HOH . D 4 HOH A 37 337 337 HOH HOH . D 4 HOH A 38 338 338 HOH HOH . D 4 HOH A 39 339 339 HOH HOH . D 4 HOH A 40 340 340 HOH HOH . D 4 HOH A 41 341 341 HOH HOH . D 4 HOH A 42 342 342 HOH HOH . D 4 HOH A 43 343 343 HOH HOH . D 4 HOH A 44 344 344 HOH HOH . D 4 HOH A 45 345 345 HOH HOH . D 4 HOH A 46 346 346 HOH HOH . D 4 HOH A 47 347 347 HOH HOH . D 4 HOH A 48 348 348 HOH HOH . D 4 HOH A 49 349 349 HOH HOH . D 4 HOH A 50 350 350 HOH HOH . D 4 HOH A 51 351 351 HOH HOH . D 4 HOH A 52 352 352 HOH HOH . D 4 HOH A 53 353 353 HOH HOH . D 4 HOH A 54 354 354 HOH HOH . D 4 HOH A 55 355 355 HOH HOH . D 4 HOH A 56 356 356 HOH HOH . D 4 HOH A 57 357 357 HOH HOH . D 4 HOH A 58 358 358 HOH HOH . D 4 HOH A 59 359 359 HOH HOH . D 4 HOH A 60 360 360 HOH HOH . D 4 HOH A 61 361 361 HOH HOH . D 4 HOH A 62 362 362 HOH HOH . D 4 HOH A 63 363 363 HOH HOH . D 4 HOH A 64 364 364 HOH HOH . D 4 HOH A 65 365 365 HOH HOH . D 4 HOH A 66 366 366 HOH HOH . D 4 HOH A 67 367 367 HOH HOH . D 4 HOH A 68 368 368 HOH HOH . D 4 HOH A 69 369 369 HOH HOH . D 4 HOH A 70 370 370 HOH HOH . D 4 HOH A 71 371 371 HOH HOH . D 4 HOH A 72 372 372 HOH HOH . D 4 HOH A 73 373 373 HOH HOH . D 4 HOH A 74 374 374 HOH HOH . D 4 HOH A 75 375 375 HOH HOH . D 4 HOH A 76 376 376 HOH HOH . D 4 HOH A 77 377 377 HOH HOH . D 4 HOH A 78 378 378 HOH HOH . D 4 HOH A 79 379 379 HOH HOH . D 4 HOH A 80 380 380 HOH HOH . D 4 HOH A 81 381 381 HOH HOH . D 4 HOH A 82 382 382 HOH HOH . D 4 HOH A 83 383 383 HOH HOH . D 4 HOH A 84 384 384 HOH HOH . D 4 HOH A 85 385 385 HOH HOH . D 4 HOH A 86 386 386 HOH HOH . D 4 HOH A 87 387 387 HOH HOH . D 4 HOH A 88 388 388 HOH HOH . D 4 HOH A 89 389 389 HOH HOH . D 4 HOH A 90 390 390 HOH HOH . D 4 HOH A 91 391 391 HOH HOH . D 4 HOH A 92 392 392 HOH HOH . D 4 HOH A 93 393 393 HOH HOH . D 4 HOH A 94 394 394 HOH HOH . D 4 HOH A 95 395 395 HOH HOH . D 4 HOH A 96 396 396 HOH HOH . D 4 HOH A 97 397 397 HOH HOH . D 4 HOH A 98 398 398 HOH HOH . D 4 HOH A 99 399 399 HOH HOH . D 4 HOH A 100 400 400 HOH HOH . D 4 HOH A 101 401 401 HOH HOH . D 4 HOH A 102 402 402 HOH HOH . D 4 HOH A 103 403 403 HOH HOH . D 4 HOH A 104 404 404 HOH HOH . D 4 HOH A 105 405 405 HOH HOH . D 4 HOH A 106 406 406 HOH HOH . D 4 HOH A 107 407 407 HOH HOH . D 4 HOH A 108 408 408 HOH HOH . D 4 HOH A 109 409 409 HOH HOH . D 4 HOH A 110 410 410 HOH HOH . D 4 HOH A 111 411 411 HOH HOH . D 4 HOH A 112 412 412 HOH HOH . D 4 HOH A 113 413 413 HOH HOH . D 4 HOH A 114 414 414 HOH HOH . D 4 HOH A 115 415 415 HOH HOH . D 4 HOH A 116 416 416 HOH HOH . D 4 HOH A 117 417 417 HOH HOH . D 4 HOH A 118 418 418 HOH HOH . D 4 HOH A 119 419 419 HOH HOH . D 4 HOH A 120 420 420 HOH HOH . D 4 HOH A 121 421 421 HOH HOH . D 4 HOH A 122 422 422 HOH HOH . D 4 HOH A 123 423 423 HOH HOH . D 4 HOH A 124 424 424 HOH HOH . D 4 HOH A 125 425 425 HOH HOH . D 4 HOH A 126 426 426 HOH HOH . D 4 HOH A 127 427 427 HOH HOH . D 4 HOH A 128 428 428 HOH HOH . D 4 HOH A 129 429 429 HOH HOH . D 4 HOH A 130 430 430 HOH HOH . D 4 HOH A 131 431 431 HOH HOH . D 4 HOH A 132 432 432 HOH HOH . D 4 HOH A 133 433 433 HOH HOH . D 4 HOH A 134 434 434 HOH HOH . D 4 HOH A 135 435 435 HOH HOH . D 4 HOH A 136 436 436 HOH HOH . D 4 HOH A 137 437 437 HOH HOH . D 4 HOH A 138 438 438 HOH HOH . D 4 HOH A 139 439 439 HOH HOH . D 4 HOH A 140 440 440 HOH HOH . D 4 HOH A 141 441 441 HOH HOH . D 4 HOH A 142 442 442 HOH HOH . D 4 HOH A 143 443 443 HOH HOH . D 4 HOH A 144 444 444 HOH HOH . D 4 HOH A 145 445 445 HOH HOH . D 4 HOH A 146 446 446 HOH HOH . D 4 HOH A 147 447 447 HOH HOH . D 4 HOH A 148 448 448 HOH HOH . D 4 HOH A 149 449 449 HOH HOH . D 4 HOH A 150 450 450 HOH HOH . D 4 HOH A 151 451 451 HOH HOH . D 4 HOH A 152 452 452 HOH HOH . D 4 HOH A 153 453 453 HOH HOH . D 4 HOH A 154 454 454 HOH HOH . D 4 HOH A 155 455 455 HOH HOH . D 4 HOH A 156 456 456 HOH HOH . D 4 HOH A 157 457 457 HOH HOH . D 4 HOH A 158 458 458 HOH HOH . D 4 HOH A 159 459 459 HOH HOH . D 4 HOH A 160 460 460 HOH HOH . D 4 HOH A 161 461 461 HOH HOH . D 4 HOH A 162 462 462 HOH HOH . D 4 HOH A 163 463 463 HOH HOH . D 4 HOH A 164 464 464 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . C 3 30.94 -20.583 -4.478 0.65 27.17 ? C1 MPD 202 A 1 HETATM 2 C C2 MPD . . . C 3 29.47 -20.503 -4.072 0.65 22.54 ? C2 MPD 202 A 1 HETATM 3 O O2 MPD . . . C 3 28.677 -20.161 -5.24 0.65 37.59 ? O2 MPD 202 A 1 HETATM 4 C CM MPD . . . C 3 29.032 -21.877 -3.578 0.65 29.1 ? CM MPD 202 A 1 HETATM 5 C C3 MPD . . . C 3 29.233 -19.476 -2.963 0.65 29.74 ? C3 MPD 202 A 1 HETATM 6 C C4 MPD . . . C 3 29.977 -18.165 -3.197 0.65 39.95 ? C4 MPD 202 A 1 HETATM 7 O O4 MPD . . . C 3 29.31 -17.083 -2.588 0.65 29.01 ? O4 MPD 202 A 1 HETATM 8 C C5 MPD . . . C 3 31.371 -18.249 -2.594 0.65 46.03 ? C5 MPD 202 A 1 HETATM 9 H H11 MPD . . . C 3 31.521 -19.879 -3.881 0.65 32.6 ? H11 MPD 202 A 1 HETATM 10 H H12 MPD . . . C 3 31.04 -20.332 -5.534 0.65 32.6 ? H12 MPD 202 A 1 HETATM 11 H H13 MPD . . . C 3 31.31 -21.594 -4.308 0.65 32.6 ? H13 MPD 202 A 1 HETATM 12 H HO2 MPD . . . C 3 28.164 -19.346 -5.06 0.65 45.1 ? HO2 MPD 202 A 1 HETATM 13 H HM1 MPD . . . C 3 28.658 -21.795 -2.558 0.65 34.91 ? HM1 MPD 202 A 1 HETATM 14 H HM2 MPD . . . C 3 29.882 -22.559 -3.599 0.65 34.91 ? HM2 MPD 202 A 1 HETATM 15 H HM3 MPD . . . C 3 28.242 -22.261 -4.225 0.65 34.91 ? HM3 MPD 202 A 1 HETATM 16 H H31 MPD . . . C 3 28.165 -19.271 -2.889 0.65 35.68 ? H31 MPD 202 A 1 HETATM 17 H H32 MPD . . . C 3 29.552 -19.901 -2.011 0.65 35.68 ? H32 MPD 202 A 1 HETATM 18 H H4 MPD . . . C 3 30.065 -17.994 -4.27 0.65 47.93 ? H4 MPD 202 A 1 HETATM 19 H HO4 MPD . . . C 3 29.009 -16.454 -3.277 0.65 34.81 ? HO4 MPD 202 A 1 HETATM 20 H H51 MPD . . . C 3 31.495 -17.459 -1.853 0.65 55.23 ? H51 MPD 202 A 1 HETATM 21 H H52 MPD . . . C 3 32.115 -18.129 -3.381 0.65 55.23 ? H52 MPD 202 A 1 HETATM 22 H H53 MPD . . . C 3 31.502 -19.219 -2.115 0.65 55.23 ? H53 MPD 202 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 22 #