data_4N00 # _model_server_result.job_id oAdwS4kGST7ZM5uoWYaMkg _model_server_result.datetime_utc '2025-03-21 00:24:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4n00 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 4N00 # _exptl.entry_id 4N00 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 382.388 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(4R,4a'S,10a'S)-2-amino-8'-(2-fluoropyridin-3-yl)-1-methyl-3',4',4a',10a'-tetrahydro-1'H-spiro[imidazole-4,10'-pyrano[4,3-b]chromen]-5(1H)-one" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4N00 _cell.length_a 74.99 _cell.length_b 103.91 _cell.length_c 100.42 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4N00 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 161 A CYS 216 1_555 A SG CYS 365 A CYS 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 223 A CYS 278 1_555 A SG CYS 388 A CYS 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 275 A CYS 330 1_555 A SG CYS 325 A CYS 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc1 A ND1 HIS 402 A HIS 457 1_555 B NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc2 A NE2 HIS 404 A HIS 459 1_555 B NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? # _chem_comp.formula 'C20 H19 F N4 O3' _chem_comp.formula_weight 382.388 _chem_comp.id 2EX _chem_comp.mon_nstd_flag . _chem_comp.name "(4R,4a'S,10a'S)-2-amino-8'-(2-fluoropyridin-3-yl)-1-methyl-3',4',4a',10a'-tetrahydro-1'H-spiro[imidazole-4,10'-pyrano[4,3-b]chromen]-5(1H)-one" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O25 C24 2EX doub 1 n n C18 C17 2EX sing 2 n n C18 O19 2EX sing 3 n n C17 C14 2EX sing 4 n n C27 N23 2EX sing 5 n n C14 O13 2EX sing 6 n n C14 C15 2EX sing 7 n n C24 N23 2EX sing 8 n n C24 C16 2EX sing 9 n n O19 C20 2EX sing 10 n n O13 C10 2EX sing 11 n n C20 C15 2EX sing 12 n n N23 C22 2EX sing 13 n n C10 C9 2EX doub 14 n y C10 C11 2EX sing 15 n y C15 C16 2EX sing 16 n n C9 C8 2EX sing 17 n y C16 C11 2EX sing 18 n n C16 N21 2EX sing 19 n n C11 C12 2EX doub 20 n y C8 C7 2EX doub 21 n y C2 C3 2EX doub 22 n y C2 C1 2EX sing 23 n y C12 C7 2EX sing 24 n y C7 C1 2EX sing 25 n n C22 N21 2EX doub 26 n n C22 N26 2EX sing 27 n n C3 C4 2EX sing 28 n y C1 C6 2EX doub 29 n y C4 N5 2EX doub 30 n y C6 N5 2EX sing 31 n y C6 F28 2EX sing 32 n n C2 H1 2EX sing 33 n n C3 H2 2EX sing 34 n n C4 H3 2EX sing 35 n n C8 H4 2EX sing 36 n n C9 H5 2EX sing 37 n n C12 H6 2EX sing 38 n n C14 H7 2EX sing 39 n n C15 H8 2EX sing 40 n n C17 H9 2EX sing 41 n n C17 H10 2EX sing 42 n n C18 H11 2EX sing 43 n n C18 H12 2EX sing 44 n n C20 H13 2EX sing 45 n n C20 H14 2EX sing 46 n n N26 H15 2EX sing 47 n n N26 H16 2EX sing 48 n n C27 H17 2EX sing 49 n n C27 H18 2EX sing 50 n n C27 H19 2EX sing 51 n n # _atom_sites.entry_id 4N00 _atom_sites.fract_transf_matrix[1][1] 0.013335 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009624 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009958 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 501 1 NI NI . C 3 2EX A 1 502 1 2EX SM1 . D 4 HOH A 1 601 1 HOH HOH . D 4 HOH A 2 602 2 HOH HOH . D 4 HOH A 3 603 3 HOH HOH . D 4 HOH A 4 604 4 HOH HOH . D 4 HOH A 5 605 5 HOH HOH . D 4 HOH A 6 606 6 HOH HOH . D 4 HOH A 7 607 7 HOH HOH . D 4 HOH A 8 608 8 HOH HOH . D 4 HOH A 9 609 9 HOH HOH . D 4 HOH A 10 610 10 HOH HOH . D 4 HOH A 11 611 11 HOH HOH . D 4 HOH A 12 612 12 HOH HOH . D 4 HOH A 13 613 13 HOH HOH . D 4 HOH A 14 614 14 HOH HOH . D 4 HOH A 15 615 15 HOH HOH . D 4 HOH A 16 616 16 HOH HOH . D 4 HOH A 17 617 17 HOH HOH . D 4 HOH A 18 618 18 HOH HOH . D 4 HOH A 19 619 19 HOH HOH . D 4 HOH A 20 620 20 HOH HOH . D 4 HOH A 21 621 21 HOH HOH . D 4 HOH A 22 622 22 HOH HOH . D 4 HOH A 23 623 23 HOH HOH . D 4 HOH A 24 624 24 HOH HOH . D 4 HOH A 25 625 25 HOH HOH . D 4 HOH A 26 626 26 HOH HOH . D 4 HOH A 27 627 27 HOH HOH . D 4 HOH A 28 628 28 HOH HOH . D 4 HOH A 29 629 29 HOH HOH . D 4 HOH A 30 630 30 HOH HOH . D 4 HOH A 31 631 31 HOH HOH . D 4 HOH A 32 632 32 HOH HOH . D 4 HOH A 33 633 33 HOH HOH . D 4 HOH A 34 634 34 HOH HOH . D 4 HOH A 35 635 35 HOH HOH . D 4 HOH A 36 636 36 HOH HOH . D 4 HOH A 37 637 37 HOH HOH . D 4 HOH A 38 638 38 HOH HOH . D 4 HOH A 39 639 39 HOH HOH . D 4 HOH A 40 640 40 HOH HOH . D 4 HOH A 41 641 41 HOH HOH . D 4 HOH A 42 642 42 HOH HOH . D 4 HOH A 43 643 43 HOH HOH . D 4 HOH A 44 644 44 HOH HOH . D 4 HOH A 45 645 45 HOH HOH . D 4 HOH A 46 646 46 HOH HOH . D 4 HOH A 47 647 47 HOH HOH . D 4 HOH A 48 648 48 HOH HOH . D 4 HOH A 49 649 49 HOH HOH . D 4 HOH A 50 650 50 HOH HOH . D 4 HOH A 51 651 51 HOH HOH . D 4 HOH A 52 652 52 HOH HOH . D 4 HOH A 53 653 53 HOH HOH . D 4 HOH A 54 654 54 HOH HOH . D 4 HOH A 55 655 55 HOH HOH . D 4 HOH A 56 656 56 HOH HOH . D 4 HOH A 57 657 57 HOH HOH . D 4 HOH A 58 658 58 HOH HOH . D 4 HOH A 59 659 59 HOH HOH . D 4 HOH A 60 660 60 HOH HOH . D 4 HOH A 61 661 61 HOH HOH . D 4 HOH A 62 662 62 HOH HOH . D 4 HOH A 63 663 63 HOH HOH . D 4 HOH A 64 664 64 HOH HOH . D 4 HOH A 65 665 65 HOH HOH . D 4 HOH A 66 666 66 HOH HOH . D 4 HOH A 67 667 67 HOH HOH . D 4 HOH A 68 668 68 HOH HOH . D 4 HOH A 69 669 69 HOH HOH . D 4 HOH A 70 670 70 HOH HOH . D 4 HOH A 71 671 71 HOH HOH . D 4 HOH A 72 672 72 HOH HOH . D 4 HOH A 73 673 73 HOH HOH . D 4 HOH A 74 674 74 HOH HOH . D 4 HOH A 75 675 75 HOH HOH . D 4 HOH A 76 676 76 HOH HOH . D 4 HOH A 77 677 77 HOH HOH . D 4 HOH A 78 678 78 HOH HOH . D 4 HOH A 79 679 79 HOH HOH . D 4 HOH A 80 680 80 HOH HOH . D 4 HOH A 81 681 81 HOH HOH . D 4 HOH A 82 682 82 HOH HOH . D 4 HOH A 83 683 83 HOH HOH . D 4 HOH A 84 684 84 HOH HOH . D 4 HOH A 85 685 85 HOH HOH . D 4 HOH A 86 686 86 HOH HOH . D 4 HOH A 87 687 87 HOH HOH . D 4 HOH A 88 688 88 HOH HOH . D 4 HOH A 89 689 89 HOH HOH . D 4 HOH A 90 690 90 HOH HOH . D 4 HOH A 91 691 91 HOH HOH . D 4 HOH A 92 692 92 HOH HOH . D 4 HOH A 93 693 93 HOH HOH . D 4 HOH A 94 694 94 HOH HOH . D 4 HOH A 95 695 95 HOH HOH . D 4 HOH A 96 696 96 HOH HOH . D 4 HOH A 97 697 97 HOH HOH . D 4 HOH A 98 698 98 HOH HOH . D 4 HOH A 99 699 99 HOH HOH . D 4 HOH A 100 700 100 HOH HOH . D 4 HOH A 101 701 101 HOH HOH . D 4 HOH A 102 702 102 HOH HOH . D 4 HOH A 103 703 103 HOH HOH . D 4 HOH A 104 704 104 HOH HOH . D 4 HOH A 105 705 105 HOH HOH . D 4 HOH A 106 706 106 HOH HOH . D 4 HOH A 107 707 107 HOH HOH . D 4 HOH A 108 708 108 HOH HOH . D 4 HOH A 109 709 109 HOH HOH . D 4 HOH A 110 710 110 HOH HOH . D 4 HOH A 111 711 111 HOH HOH . D 4 HOH A 112 712 112 HOH HOH . D 4 HOH A 113 713 113 HOH HOH . D 4 HOH A 114 714 114 HOH HOH . D 4 HOH A 115 715 115 HOH HOH . D 4 HOH A 116 716 116 HOH HOH . D 4 HOH A 117 717 117 HOH HOH . D 4 HOH A 118 718 118 HOH HOH . D 4 HOH A 119 719 119 HOH HOH . D 4 HOH A 120 720 120 HOH HOH . D 4 HOH A 121 721 121 HOH HOH . D 4 HOH A 122 722 122 HOH HOH . D 4 HOH A 123 723 123 HOH HOH . D 4 HOH A 124 724 124 HOH HOH . D 4 HOH A 125 725 125 HOH HOH . D 4 HOH A 126 726 126 HOH HOH . D 4 HOH A 127 727 127 HOH HOH . D 4 HOH A 128 728 128 HOH HOH . D 4 HOH A 129 729 129 HOH HOH . D 4 HOH A 130 730 130 HOH HOH . D 4 HOH A 131 731 131 HOH HOH . D 4 HOH A 132 732 132 HOH HOH . D 4 HOH A 133 733 133 HOH HOH . D 4 HOH A 134 734 134 HOH HOH . D 4 HOH A 135 735 135 HOH HOH . D 4 HOH A 136 736 136 HOH HOH . D 4 HOH A 137 737 137 HOH HOH . D 4 HOH A 138 738 138 HOH HOH . D 4 HOH A 139 739 139 HOH HOH . D 4 HOH A 140 740 140 HOH HOH . D 4 HOH A 141 741 141 HOH HOH . D 4 HOH A 142 742 142 HOH HOH . D 4 HOH A 143 743 143 HOH HOH . D 4 HOH A 144 744 144 HOH HOH . D 4 HOH A 145 745 145 HOH HOH . D 4 HOH A 146 746 146 HOH HOH . D 4 HOH A 147 747 147 HOH HOH . D 4 HOH A 148 748 148 HOH HOH . D 4 HOH A 149 749 149 HOH HOH . D 4 HOH A 150 750 150 HOH HOH . D 4 HOH A 151 751 151 HOH HOH . D 4 HOH A 152 752 152 HOH HOH . D 4 HOH A 153 753 153 HOH HOH . D 4 HOH A 154 754 154 HOH HOH . D 4 HOH A 155 755 155 HOH HOH . D 4 HOH A 156 756 156 HOH HOH . D 4 HOH A 157 757 157 HOH HOH . D 4 HOH A 158 758 158 HOH HOH . D 4 HOH A 159 759 159 HOH HOH . D 4 HOH A 160 760 160 HOH HOH . D 4 HOH A 161 761 161 HOH HOH . D 4 HOH A 162 762 162 HOH HOH . D 4 HOH A 163 763 163 HOH HOH . D 4 HOH A 164 764 164 HOH HOH . D 4 HOH A 165 765 165 HOH HOH . D 4 HOH A 166 766 166 HOH HOH . D 4 HOH A 167 767 167 HOH HOH . D 4 HOH A 168 768 168 HOH HOH . D 4 HOH A 169 769 169 HOH HOH . D 4 HOH A 170 770 170 HOH HOH . D 4 HOH A 171 771 171 HOH HOH . D 4 HOH A 172 772 172 HOH HOH . D 4 HOH A 173 773 173 HOH HOH . D 4 HOH A 174 774 174 HOH HOH . D 4 HOH A 175 775 175 HOH HOH . D 4 HOH A 176 776 176 HOH HOH . D 4 HOH A 177 777 177 HOH HOH . D 4 HOH A 178 778 178 HOH HOH . D 4 HOH A 179 779 179 HOH HOH . D 4 HOH A 180 780 180 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 2EX . . . C 3 27.613 17.016 9.995 1 18.01 ? C1 2EX 502 A 1 HETATM 2 C C2 2EX . . . C 3 28.594 17.657 9.187 1 18.66 ? C2 2EX 502 A 1 HETATM 3 C C3 2EX . . . C 3 29.112 18.908 9.616 1 18.93 ? C3 2EX 502 A 1 HETATM 4 C C4 2EX . . . C 3 28.612 19.482 10.816 1 18.9 ? C4 2EX 502 A 1 HETATM 5 N N5 2EX . . . C 3 27.664 18.885 11.569 1 18.32 ? N5 2EX 502 A 1 HETATM 6 C C6 2EX . . . C 3 27.178 17.688 11.168 1 17.85 ? C6 2EX 502 A 1 HETATM 7 C C7 2EX . . . C 3 27.079 15.783 9.546 1 17.42 ? C7 2EX 502 A 1 HETATM 8 C C8 2EX . . . C 3 27.929 14.711 9.158 1 17.53 ? C8 2EX 502 A 1 HETATM 9 C C9 2EX . . . C 3 27.367 13.506 8.67 1 16.96 ? C9 2EX 502 A 1 HETATM 10 C C10 2EX . . . C 3 25.961 13.368 8.547 1 16.94 ? C10 2EX 502 A 1 HETATM 11 C C11 2EX . . . C 3 25.1 14.427 8.938 1 16.29 ? C11 2EX 502 A 1 HETATM 12 C C12 2EX . . . C 3 25.668 15.632 9.423 1 17.04 ? C12 2EX 502 A 1 HETATM 13 O O13 2EX . . . C 3 25.463 12.174 8.081 1 17.17 ? O13 2EX 502 A 1 HETATM 14 C C14 2EX . . . C 3 24.132 12.115 7.582 1 16.92 ? C14 2EX 502 A 1 HETATM 15 C C15 2EX . . . C 3 23.162 12.822 8.555 1 16.4 ? C15 2EX 502 A 1 HETATM 16 C C16 2EX . . . C 3 23.571 14.292 8.797 1 15.91 ? C16 2EX 502 A 1 HETATM 17 C C17 2EX . . . C 3 23.726 10.632 7.437 1 17.41 ? C17 2EX 502 A 1 HETATM 18 C C18 2EX . . . C 3 22.243 10.543 7.004 1 17.38 ? C18 2EX 502 A 1 HETATM 19 O O19 2EX . . . C 3 21.415 11.227 7.947 1 17.63 ? O19 2EX 502 A 1 HETATM 20 C C20 2EX . . . C 3 21.692 12.627 8.094 1 17.16 ? C20 2EX 502 A 1 HETATM 21 N N21 2EX . . . C 3 22.828 14.852 9.928 1 15.34 ? N21 2EX 502 A 1 HETATM 22 C C22 2EX . . . C 3 22.157 15.89 9.546 1 15.3 ? C22 2EX 502 A 1 HETATM 23 N N23 2EX . . . C 3 22.313 16.203 8.23 1 15.09 ? N23 2EX 502 A 1 HETATM 24 C C24 2EX . . . C 3 23.148 15.278 7.687 1 15.62 ? C24 2EX 502 A 1 HETATM 25 O O25 2EX . . . C 3 23.538 15.216 6.516 1 14.87 ? O25 2EX 502 A 1 HETATM 26 N N26 2EX . . . C 3 21.32 16.668 10.321 1 14.31 ? N26 2EX 502 A 1 HETATM 27 C C27 2EX . . . C 3 21.693 17.315 7.502 1 14.95 ? C27 2EX 502 A 1 HETATM 28 F F28 2EX . . . C 3 26.243 17.132 11.958 1 18.44 ? F28 2EX 502 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #