data_4N04 # _model_server_result.job_id N1Jb9PtJwNiB-9ZeKgJZfA _model_server_result.datetime_utc '2024-11-29 09:03:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4n04 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":202}' # _entry.id 4N04 # _exptl.entry_id 4N04 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4N04 _cell.length_a 123.6 _cell.length_b 123.6 _cell.length_c 123.6 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4N04 _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,G 1 1 B,D,E,F,H 2 1 A,B,C,D,E,F,G,H 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 63 A ALA 60 1_555 A N MSE 64 A MSE 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale2 A C MSE 64 A MSE 61 1_555 A N GLN 65 A GLN 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 B C ALA 63 B ALA 60 1_555 B N MSE 64 B MSE 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 B C MSE 64 B MSE 61 1_555 B N GLN 65 B GLN 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 4N04 _atom_sites.fract_transf_matrix[1][1] 0.008091 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008091 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008091 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NHE A 1 200 200 NHE CES . D 2 NHE B 1 201 200 NHE CES . E 3 GOL B 1 202 1 GOL GOL . F 3 GOL B 1 203 1 GOL GOL . G 4 HOH A 1 301 4 HOH HOH . G 4 HOH A 2 302 5 HOH HOH . G 4 HOH A 3 303 18 HOH HOH . G 4 HOH A 4 304 20 HOH HOH . G 4 HOH A 5 305 22 HOH HOH . G 4 HOH A 6 306 36 HOH HOH . G 4 HOH A 7 307 38 HOH HOH . G 4 HOH A 8 308 40 HOH HOH . G 4 HOH A 9 309 41 HOH HOH . G 4 HOH A 10 310 44 HOH HOH . H 4 HOH B 1 301 1 HOH HOH . H 4 HOH B 2 302 2 HOH HOH . H 4 HOH B 3 303 3 HOH HOH . H 4 HOH B 4 304 6 HOH HOH . H 4 HOH B 5 305 7 HOH HOH . H 4 HOH B 6 306 8 HOH HOH . H 4 HOH B 7 307 9 HOH HOH . H 4 HOH B 8 308 10 HOH HOH . H 4 HOH B 9 309 11 HOH HOH . H 4 HOH B 10 310 12 HOH HOH . H 4 HOH B 11 311 13 HOH HOH . H 4 HOH B 12 312 14 HOH HOH . H 4 HOH B 13 313 16 HOH HOH . H 4 HOH B 14 314 17 HOH HOH . H 4 HOH B 15 315 23 HOH HOH . H 4 HOH B 16 316 24 HOH HOH . H 4 HOH B 17 317 25 HOH HOH . H 4 HOH B 18 318 26 HOH HOH . H 4 HOH B 19 319 27 HOH HOH . H 4 HOH B 20 320 28 HOH HOH . H 4 HOH B 21 321 29 HOH HOH . H 4 HOH B 22 322 30 HOH HOH . H 4 HOH B 23 323 34 HOH HOH . H 4 HOH B 24 324 35 HOH HOH . H 4 HOH B 25 325 37 HOH HOH . H 4 HOH B 26 326 43 HOH HOH . H 4 HOH B 27 327 45 HOH HOH . H 4 HOH B 28 328 47 HOH HOH . H 4 HOH B 29 329 48 HOH HOH . H 4 HOH B 30 330 49 HOH HOH . H 4 HOH B 31 331 50 HOH HOH . H 4 HOH B 32 332 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 87.877 41.653 47.138 1 69.96 ? C1 GOL 202 B 1 HETATM 2 O O1 GOL . . . E 3 87.836 41.784 45.734 1 70.53 ? O1 GOL 202 B 1 HETATM 3 C C2 GOL . . . E 3 86.913 42.653 47.763 1 69.47 ? C2 GOL 202 B 1 HETATM 4 O O2 GOL . . . E 3 86.318 42.11 48.923 1 70.6 ? O2 GOL 202 B 1 HETATM 5 C C3 GOL . . . E 3 87.627 43.974 48.038 1 63.65 ? C3 GOL 202 B 1 HETATM 6 O O3 GOL . . . E 3 87.709 44.715 46.837 1 58.82 ? O3 GOL 202 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #