data_4N05
#
_model_server_result.job_id            M47x0QrFo7U8TdrmD1HNwA 
_model_server_result.datetime_utc      '2024-11-14 17:27:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4n05 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":201}' 
#
_entry.id    4N05 
#
_exptl.entry_id    4N05 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111 
_cell.angle_gamma         90 
_cell.entry_id            4N05 
_cell.length_a            74.362 
_cell.length_b            88.673 
_cell.length_c            74.37 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4N05 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H,I,L,M 1 1 
C,D,J,N,O 2 1 
E,F,K,P,Q 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PRO 15 B PRO 12 1_555 A N MSE 16 B MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale2 A C MSE 16 B MSE 13 1_555 A N ASP 17 B ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 A C ALA 85 B ALA 82 1_555 A N MSE 86 B MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale4 A C MSE 86 B MSE 83 1_555 A N ASN 87 B ASN 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale5 A C LYS 90 B LYS 87 1_555 A N MSE 91 B MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale6 A C MSE 91 B MSE 88 1_555 A N VAL 92 B VAL 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale7 B C PRO 15 A PRO 12 1_555 B N MSE 16 A MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale8 B C MSE 16 A MSE 13 1_555 B N ASP 17 A ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale9 B C ALA 85 A ALA 82 1_555 B N MSE 86 A MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale10 B C MSE 86 A MSE 83 1_555 B N ASN 87 A ASN 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale11 B C LYS 90 A LYS 87 1_555 B N MSE 91 A MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale12 B C MSE 91 A MSE 88 1_555 B N VAL 92 A VAL 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale13 C C PRO 15 C PRO 12 1_555 C N MSE 16 C MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale14 C C MSE 16 C MSE 13 1_555 C N ASP 17 C ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale15 C C ALA 85 C ALA 82 1_555 C N MSE 86 C MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale16 C C MSE 86 C MSE 83 1_555 C N ASN 87 C ASN 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale17 C C LYS 90 C LYS 87 1_555 C N MSE 91 C MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale18 C C MSE 91 C MSE 88 1_555 C N VAL 92 C VAL 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale19 D C PRO 15 D PRO 12 1_555 D N MSE 16 D MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale20 D C MSE 16 D MSE 13 1_555 D N ASP 17 D ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale21 D C ALA 85 D ALA 82 1_555 D N MSE 86 D MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale22 D C MSE 86 D MSE 83 1_555 D N ASN 87 D ASN 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale23 D C LYS 90 D LYS 87 1_555 D N MSE 91 D MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale24 D C MSE 91 D MSE 88 1_555 D N VAL 92 D VAL 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? 
covale ? covale25 E C PRO 15 E PRO 12 1_555 E N MSE 16 E MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale26 E C MSE 16 E MSE 13 1_555 E N ASP 17 E ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale27 E C ALA 85 E ALA 82 1_555 E N MSE 86 E MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale28 E C MSE 86 E MSE 83 1_555 E N ASN 87 E ASN 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale29 E C LYS 90 E LYS 87 1_555 E N MSE 91 E MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale30 E C MSE 91 E MSE 88 1_555 E N VAL 92 E VAL 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale31 F C PRO 15 F PRO 12 1_555 F N MSE 16 F MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale32 F C MSE 16 F MSE 13 1_555 F N ASP 17 F ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale33 F C ALA 85 F ALA 82 1_555 F N MSE 86 F MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale34 F C MSE 86 F MSE 83 1_555 F N ASN 87 F ASN 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale35 F C LYS 90 F LYS 87 1_555 F N MSE 91 F MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale36 F C MSE 91 F MSE 88 1_555 F N VAL 92 F VAL 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
_atom_sites.entry_id                     4N05 
_atom_sites.fract_transf_matrix[1][1]    0.013448 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005162 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011277 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014403 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 GOL B 1 201 1 GOL GOL . 
H 2 GOL A 1 201 3 GOL GOL . 
I 2 GOL A 1 202 5 GOL GOL . 
J 2 GOL C 1 201 4 GOL GOL . 
K 2 GOL E 1 201 2 GOL GOL . 
L 3 HOH B 1 301 1 HOH HOH . 
L 3 HOH B 2 302 11 HOH HOH . 
L 3 HOH B 3 303 12 HOH HOH . 
L 3 HOH B 4 304 19 HOH HOH . 
L 3 HOH B 5 305 20 HOH HOH . 
L 3 HOH B 6 306 21 HOH HOH . 
L 3 HOH B 7 307 22 HOH HOH . 
L 3 HOH B 8 308 23 HOH HOH . 
L 3 HOH B 9 309 25 HOH HOH . 
L 3 HOH B 10 310 26 HOH HOH . 
L 3 HOH B 11 311 27 HOH HOH . 
L 3 HOH B 12 312 33 HOH HOH . 
L 3 HOH B 13 313 44 HOH HOH . 
L 3 HOH B 14 314 54 HOH HOH . 
L 3 HOH B 15 315 57 HOH HOH . 
L 3 HOH B 16 316 58 HOH HOH . 
L 3 HOH B 17 317 59 HOH HOH . 
L 3 HOH B 18 318 65 HOH HOH . 
L 3 HOH B 19 319 76 HOH HOH . 
L 3 HOH B 20 320 77 HOH HOH . 
L 3 HOH B 21 321 78 HOH HOH . 
L 3 HOH B 22 322 83 HOH HOH . 
L 3 HOH B 23 323 85 HOH HOH . 
L 3 HOH B 24 324 87 HOH HOH . 
L 3 HOH B 25 325 88 HOH HOH . 
L 3 HOH B 26 326 92 HOH HOH . 
L 3 HOH B 27 327 93 HOH HOH . 
L 3 HOH B 28 328 100 HOH HOH . 
L 3 HOH B 29 329 102 HOH HOH . 
L 3 HOH B 30 330 108 HOH HOH . 
L 3 HOH B 31 331 110 HOH HOH . 
L 3 HOH B 32 332 112 HOH HOH . 
L 3 HOH B 33 333 113 HOH HOH . 
L 3 HOH B 34 334 117 HOH HOH . 
M 3 HOH A 1 301 3 HOH HOH . 
M 3 HOH A 2 302 5 HOH HOH . 
M 3 HOH A 3 303 6 HOH HOH . 
M 3 HOH A 4 304 10 HOH HOH . 
M 3 HOH A 5 305 40 HOH HOH . 
M 3 HOH A 6 306 51 HOH HOH . 
M 3 HOH A 7 307 62 HOH HOH . 
M 3 HOH A 8 308 80 HOH HOH . 
M 3 HOH A 9 309 81 HOH HOH . 
M 3 HOH A 10 310 86 HOH HOH . 
M 3 HOH A 11 311 89 HOH HOH . 
M 3 HOH A 12 312 90 HOH HOH . 
M 3 HOH A 13 313 91 HOH HOH . 
M 3 HOH A 14 314 94 HOH HOH . 
M 3 HOH A 15 315 101 HOH HOH . 
M 3 HOH A 16 316 104 HOH HOH . 
M 3 HOH A 17 317 105 HOH HOH . 
M 3 HOH A 18 318 106 HOH HOH . 
M 3 HOH A 19 319 111 HOH HOH . 
M 3 HOH A 20 320 118 HOH HOH . 
N 3 HOH C 1 301 13 HOH HOH . 
N 3 HOH C 2 302 14 HOH HOH . 
N 3 HOH C 3 303 16 HOH HOH . 
N 3 HOH C 4 304 17 HOH HOH . 
N 3 HOH C 5 305 24 HOH HOH . 
N 3 HOH C 6 306 45 HOH HOH . 
N 3 HOH C 7 307 46 HOH HOH . 
N 3 HOH C 8 308 56 HOH HOH . 
N 3 HOH C 9 309 67 HOH HOH . 
N 3 HOH C 10 310 69 HOH HOH . 
N 3 HOH C 11 311 75 HOH HOH . 
N 3 HOH C 12 312 84 HOH HOH . 
N 3 HOH C 13 313 96 HOH HOH . 
N 3 HOH C 14 314 109 HOH HOH . 
O 3 HOH D 1 201 71 HOH HOH . 
O 3 HOH D 2 202 97 HOH HOH . 
O 3 HOH D 3 203 98 HOH HOH . 
O 3 HOH D 4 204 114 HOH HOH . 
O 3 HOH D 5 205 115 HOH HOH . 
P 3 HOH E 1 301 7 HOH HOH . 
P 3 HOH E 2 302 8 HOH HOH . 
P 3 HOH E 3 303 9 HOH HOH . 
P 3 HOH E 4 304 35 HOH HOH . 
P 3 HOH E 5 305 36 HOH HOH . 
P 3 HOH E 6 306 37 HOH HOH . 
P 3 HOH E 7 307 38 HOH HOH . 
P 3 HOH E 8 308 39 HOH HOH . 
P 3 HOH E 9 309 41 HOH HOH . 
P 3 HOH E 10 310 47 HOH HOH . 
P 3 HOH E 11 311 48 HOH HOH . 
P 3 HOH E 12 312 53 HOH HOH . 
P 3 HOH E 13 313 55 HOH HOH . 
P 3 HOH E 14 314 61 HOH HOH . 
P 3 HOH E 15 315 73 HOH HOH . 
P 3 HOH E 16 316 74 HOH HOH . 
P 3 HOH E 17 317 99 HOH HOH . 
P 3 HOH E 18 318 107 HOH HOH . 
P 3 HOH E 19 319 116 HOH HOH . 
Q 3 HOH F 1 201 66 HOH HOH . 
Q 3 HOH F 2 202 95 HOH HOH . 
Q 3 HOH F 3 203 103 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 2 3.825 2.868 8.773 1 78.14 ? C1 GOL 201 B 1 
HETATM 2 O O1 GOL . . . G 2 2.48 3.147 8.441 1 73.43 ? O1 GOL 201 B 1 
HETATM 3 C C2 GOL . . . G 2 4.41 1.793 7.855 1 80.12 ? C2 GOL 201 B 1 
HETATM 4 O O2 GOL . . . G 2 5.601 2.282 7.28 1 77.27 ? O2 GOL 201 B 1 
HETATM 5 C C3 GOL . . . G 2 4.715 0.509 8.627 1 76.21 ? C3 GOL 201 B 1 
HETATM 6 O O3 GOL . . . G 2 3.522 -0.16 8.988 1 70.26 ? O3 GOL 201 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           6 
#