data_4N09
#
_model_server_result.job_id            LhlYsRegRrdDItjPJTt5yA 
_model_server_result.datetime_utc      '2024-11-04 22:37:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4n09 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":401}' 
#
_entry.id    4N09 
#
_exptl.entry_id    4N09 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              267.241 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ADENOSINE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.78 
_cell.angle_gamma         90 
_cell.entry_id            4N09 
_cell.length_a            184.53 
_cell.length_b            90.22 
_cell.length_c            98.04 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4N09 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,O 1 1 
B,H,I,J,P 2 1 
C,K,L,Q 3 1 
D,M,N,R 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 H N N 
? 2 K N N 
? 2 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 242 A CYS 239 1_555 D SG CYS 242 D CYS 239 4_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
disulf ? disulf2 B SG CYS 242 B CYS 239 1_555 C SG CYS 242 C CYS 239 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
#
_chem_comp.formula           'C10 H13 N5 O4' 
_chem_comp.formula_weight    267.241 
_chem_comp.id                ADN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ADENOSINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4N09 
_atom_sites.fract_transf_matrix[1][1]    0.005419 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001329 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011084 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010502 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ADN A 1 401 1 ADN ADN . 
F 3 ADP A 1 402 2 ADP ADP . 
G 4 EDO A 1 403 2 EDO EDO . 
H 2 ADN B 1 401 3 ADN ADN . 
I 3 ADP B 1 402 4 ADP ADP . 
J 4 EDO B 1 403 1 EDO EDO . 
K 2 ADN C 1 401 5 ADN ADN . 
L 3 ADP C 1 402 6 ADP ADP . 
M 2 ADN D 1 401 7 ADN ADN . 
N 3 ADP D 1 402 8 ADP ADP . 
O 5 HOH A 1 501 23 HOH HOH . 
O 5 HOH A 2 502 24 HOH HOH . 
O 5 HOH A 3 503 25 HOH HOH . 
O 5 HOH A 4 504 26 HOH HOH . 
O 5 HOH A 5 505 27 HOH HOH . 
O 5 HOH A 6 506 28 HOH HOH . 
O 5 HOH A 7 507 29 HOH HOH . 
O 5 HOH A 8 508 30 HOH HOH . 
O 5 HOH A 9 509 31 HOH HOH . 
O 5 HOH A 10 510 32 HOH HOH . 
O 5 HOH A 11 511 33 HOH HOH . 
O 5 HOH A 12 512 34 HOH HOH . 
O 5 HOH A 13 513 35 HOH HOH . 
O 5 HOH A 14 514 37 HOH HOH . 
O 5 HOH A 15 515 72 HOH HOH . 
O 5 HOH A 16 516 73 HOH HOH . 
O 5 HOH A 17 517 81 HOH HOH . 
O 5 HOH A 18 518 96 HOH HOH . 
O 5 HOH A 19 519 104 HOH HOH . 
O 5 HOH A 20 520 106 HOH HOH . 
O 5 HOH A 21 521 110 HOH HOH . 
O 5 HOH A 22 522 111 HOH HOH . 
O 5 HOH A 23 523 112 HOH HOH . 
O 5 HOH A 24 524 113 HOH HOH . 
O 5 HOH A 25 525 123 HOH HOH . 
O 5 HOH A 26 526 126 HOH HOH . 
O 5 HOH A 27 527 130 HOH HOH . 
O 5 HOH A 28 528 136 HOH HOH . 
O 5 HOH A 29 529 137 HOH HOH . 
O 5 HOH A 30 530 141 HOH HOH . 
P 5 HOH B 1 501 1 HOH HOH . 
P 5 HOH B 2 502 2 HOH HOH . 
P 5 HOH B 3 503 3 HOH HOH . 
P 5 HOH B 4 504 4 HOH HOH . 
P 5 HOH B 5 505 5 HOH HOH . 
P 5 HOH B 6 506 6 HOH HOH . 
P 5 HOH B 7 507 7 HOH HOH . 
P 5 HOH B 8 508 8 HOH HOH . 
P 5 HOH B 9 509 9 HOH HOH . 
P 5 HOH B 10 510 10 HOH HOH . 
P 5 HOH B 11 511 11 HOH HOH . 
P 5 HOH B 12 512 12 HOH HOH . 
P 5 HOH B 13 513 13 HOH HOH . 
P 5 HOH B 14 514 14 HOH HOH . 
P 5 HOH B 15 515 15 HOH HOH . 
P 5 HOH B 16 516 16 HOH HOH . 
P 5 HOH B 17 517 17 HOH HOH . 
P 5 HOH B 18 518 18 HOH HOH . 
P 5 HOH B 19 519 19 HOH HOH . 
P 5 HOH B 20 520 20 HOH HOH . 
P 5 HOH B 21 521 21 HOH HOH . 
P 5 HOH B 22 522 22 HOH HOH . 
P 5 HOH B 23 523 38 HOH HOH . 
P 5 HOH B 24 524 39 HOH HOH . 
P 5 HOH B 25 525 40 HOH HOH . 
P 5 HOH B 26 526 41 HOH HOH . 
P 5 HOH B 27 527 42 HOH HOH . 
P 5 HOH B 28 528 43 HOH HOH . 
P 5 HOH B 29 529 44 HOH HOH . 
P 5 HOH B 30 530 45 HOH HOH . 
P 5 HOH B 31 531 46 HOH HOH . 
P 5 HOH B 32 532 47 HOH HOH . 
P 5 HOH B 33 533 48 HOH HOH . 
P 5 HOH B 34 534 49 HOH HOH . 
P 5 HOH B 35 535 71 HOH HOH . 
P 5 HOH B 36 536 76 HOH HOH . 
P 5 HOH B 37 537 78 HOH HOH . 
P 5 HOH B 38 538 80 HOH HOH . 
P 5 HOH B 39 539 87 HOH HOH . 
P 5 HOH B 40 540 88 HOH HOH . 
P 5 HOH B 41 541 90 HOH HOH . 
P 5 HOH B 42 542 92 HOH HOH . 
P 5 HOH B 43 543 93 HOH HOH . 
P 5 HOH B 44 544 95 HOH HOH . 
P 5 HOH B 45 545 97 HOH HOH . 
P 5 HOH B 46 546 98 HOH HOH . 
P 5 HOH B 47 547 101 HOH HOH . 
P 5 HOH B 48 548 102 HOH HOH . 
P 5 HOH B 49 549 103 HOH HOH . 
P 5 HOH B 50 550 116 HOH HOH . 
P 5 HOH B 51 551 118 HOH HOH . 
P 5 HOH B 52 552 122 HOH HOH . 
P 5 HOH B 53 553 125 HOH HOH . 
P 5 HOH B 54 554 127 HOH HOH . 
P 5 HOH B 55 555 128 HOH HOH . 
P 5 HOH B 56 556 129 HOH HOH . 
P 5 HOH B 57 557 131 HOH HOH . 
P 5 HOH B 58 558 132 HOH HOH . 
P 5 HOH B 59 559 134 HOH HOH . 
P 5 HOH B 60 560 135 HOH HOH . 
P 5 HOH B 61 561 138 HOH HOH . 
P 5 HOH B 62 562 139 HOH HOH . 
P 5 HOH B 63 563 142 HOH HOH . 
P 5 HOH B 64 564 143 HOH HOH . 
Q 5 HOH C 1 501 50 HOH HOH . 
Q 5 HOH C 2 502 51 HOH HOH . 
Q 5 HOH C 3 503 52 HOH HOH . 
Q 5 HOH C 4 504 53 HOH HOH . 
Q 5 HOH C 5 505 54 HOH HOH . 
Q 5 HOH C 6 506 55 HOH HOH . 
Q 5 HOH C 7 507 57 HOH HOH . 
Q 5 HOH C 8 508 58 HOH HOH . 
Q 5 HOH C 9 509 59 HOH HOH . 
Q 5 HOH C 10 510 60 HOH HOH . 
Q 5 HOH C 11 511 61 HOH HOH . 
Q 5 HOH C 12 512 62 HOH HOH . 
Q 5 HOH C 13 513 63 HOH HOH . 
Q 5 HOH C 14 514 64 HOH HOH . 
Q 5 HOH C 15 515 65 HOH HOH . 
Q 5 HOH C 16 516 75 HOH HOH . 
Q 5 HOH C 17 517 77 HOH HOH . 
Q 5 HOH C 18 518 79 HOH HOH . 
Q 5 HOH C 19 519 82 HOH HOH . 
Q 5 HOH C 20 520 84 HOH HOH . 
Q 5 HOH C 21 521 85 HOH HOH . 
Q 5 HOH C 22 522 86 HOH HOH . 
Q 5 HOH C 23 523 91 HOH HOH . 
Q 5 HOH C 24 524 94 HOH HOH . 
Q 5 HOH C 25 525 99 HOH HOH . 
Q 5 HOH C 26 526 108 HOH HOH . 
Q 5 HOH C 27 527 109 HOH HOH . 
Q 5 HOH C 28 528 117 HOH HOH . 
Q 5 HOH C 29 529 119 HOH HOH . 
Q 5 HOH C 30 530 120 HOH HOH . 
Q 5 HOH C 31 531 121 HOH HOH . 
Q 5 HOH C 32 532 124 HOH HOH . 
Q 5 HOH C 33 533 133 HOH HOH . 
Q 5 HOH C 34 534 145 HOH HOH . 
Q 5 HOH C 35 535 146 HOH HOH . 
Q 5 HOH C 36 536 147 HOH HOH . 
Q 5 HOH C 37 537 148 HOH HOH . 
Q 5 HOH C 38 538 149 HOH HOH . 
Q 5 HOH C 39 539 150 HOH HOH . 
Q 5 HOH C 40 540 151 HOH HOH . 
R 5 HOH D 1 501 66 HOH HOH . 
R 5 HOH D 2 502 67 HOH HOH . 
R 5 HOH D 3 503 68 HOH HOH . 
R 5 HOH D 4 504 69 HOH HOH . 
R 5 HOH D 5 505 70 HOH HOH . 
R 5 HOH D 6 506 83 HOH HOH . 
R 5 HOH D 7 507 89 HOH HOH . 
R 5 HOH D 8 508 100 HOH HOH . 
R 5 HOH D 9 509 105 HOH HOH . 
R 5 HOH D 10 510 107 HOH HOH . 
R 5 HOH D 11 511 114 HOH HOH . 
R 5 HOH D 12 512 115 HOH HOH . 
R 5 HOH D 13 513 140 HOH HOH . 
R 5 HOH D 14 514 144 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5' ADN . . . M 2 13.734 -41.347 22.965 1 49.69 ? O5' ADN 401 D 1 
HETATM 2 C C5' ADN . . . M 2 14.851 -41.476 22.092 1 47.92 ? C5' ADN 401 D 1 
HETATM 3 C C4' ADN . . . M 2 14.431 -40.853 20.791 1 45.99 ? C4' ADN 401 D 1 
HETATM 4 O O4' ADN . . . M 2 14.594 -39.448 20.966 1 47.63 ? O4' ADN 401 D 1 
HETATM 5 C C3' ADN . . . M 2 15.236 -41.281 19.563 1 46.87 ? C3' ADN 401 D 1 
HETATM 6 O O3' ADN . . . M 2 14.456 -42.064 18.645 1 45.32 ? O3' ADN 401 D 1 
HETATM 7 C C2' ADN . . . M 2 15.625 -39.986 18.883 1 46.96 ? C2' ADN 401 D 1 
HETATM 8 O O2' ADN . . . M 2 15.29 -39.986 17.484 1 47.73 ? O2' ADN 401 D 1 
HETATM 9 C C1' ADN . . . M 2 14.812 -38.954 19.65 1 47.6 ? C1' ADN 401 D 1 
HETATM 10 N N9 ADN . . . M 2 15.501 -37.667 19.703 1 46.06 ? N9 ADN 401 D 1 
HETATM 11 C C8 ADN . . . M 2 16.668 -37.416 20.288 1 46.49 ? C8 ADN 401 D 1 
HETATM 12 N N7 ADN . . . M 2 16.986 -36.106 20.135 1 47.67 ? N7 ADN 401 D 1 
HETATM 13 C C5 ADN . . . M 2 15.996 -35.522 19.453 1 45.59 ? C5 ADN 401 D 1 
HETATM 14 C C6 ADN . . . M 2 15.704 -34.173 18.938 1 46.13 ? C6 ADN 401 D 1 
HETATM 15 N N6 ADN . . . M 2 16.542 -33.129 19.136 1 50.58 ? N6 ADN 401 D 1 
HETATM 16 N N1 ADN . . . M 2 14.569 -34.01 18.246 1 44.96 ? N1 ADN 401 D 1 
HETATM 17 C C2 ADN . . . M 2 13.705 -35.021 18.03 1 46.61 ? C2 ADN 401 D 1 
HETATM 18 N N3 ADN . . . M 2 13.906 -36.272 18.474 1 43.36 ? N3 ADN 401 D 1 
HETATM 19 C C4 ADN . . . M 2 15.02 -36.566 19.165 1 45.08 ? C4 ADN 401 D 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           19 
#