data_4N10 # _model_server_result.job_id lAzEme1MQRKARVmLKsbpOA _model_server_result.datetime_utc '2024-11-24 03:29:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4n10 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 4N10 # _exptl.entry_id 4N10 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.045 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Cisplatin _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4N10 _cell.length_a 48.652 _cell.length_b 48.652 _cell.length_c 83.234 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4N10 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 29 1_555 A SG CYS 32 A CYS 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc1 A ND1 HIS 49 A HIS 49 1_555 E PT1 CPT . A CPT 204 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.205 ? metalc ? metalc2 A ND1 HIS 49 A HIS 49 1_555 F PT1 CPT . A CPT 205 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.451 ? metalc ? metalc3 A SD MET 59 A MET 59 1_555 D PT1 CPT . A CPT 203 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.219 ? # _chem_comp.formula 'Cl2 H6 N2 Pt' _chem_comp.formula_weight 300.045 _chem_comp.id CPT _chem_comp.mon_nstd_flag . _chem_comp.name Cisplatin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms diammine(dichloro)platinum # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PT1 N1 CPT sing 70 n n PT1 N2 CPT sing 71 n n N1 H11 CPT sing 72 n n N1 H12 CPT sing 73 n n N1 H13 CPT sing 74 n n N2 H21 CPT sing 75 n n N2 H22 CPT sing 76 n n N2 H23 CPT sing 77 n n CL2 PT1 CPT sing 78 n n CL1 PT1 CPT sing 79 n n # _atom_sites.entry_id 4N10 _atom_sites.fract_transf_matrix[1][1] 0.020554 _atom_sites.fract_transf_matrix[1][2] 0.011867 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023734 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012014 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPO A 1 201 1 MPO MPO . C 3 MPD A 1 202 1 MPD MPD . D 4 CPT A 1 203 1 CPT CPT . E 4 CPT A 1 204 2 CPT CPT . F 4 CPT A 1 205 3 CPT CPT . G 5 HOH A 1 301 1 HOH HOH . G 5 HOH A 2 302 2 HOH HOH . G 5 HOH A 3 303 3 HOH HOH . G 5 HOH A 4 304 4 HOH HOH . G 5 HOH A 5 305 5 HOH HOH . G 5 HOH A 6 306 6 HOH HOH . G 5 HOH A 7 307 7 HOH HOH . G 5 HOH A 8 308 8 HOH HOH . G 5 HOH A 9 309 9 HOH HOH . G 5 HOH A 10 310 10 HOH HOH . G 5 HOH A 11 311 11 HOH HOH . G 5 HOH A 12 312 12 HOH HOH . G 5 HOH A 13 313 13 HOH HOH . G 5 HOH A 14 314 14 HOH HOH . G 5 HOH A 15 315 15 HOH HOH . G 5 HOH A 16 316 16 HOH HOH . G 5 HOH A 17 317 17 HOH HOH . G 5 HOH A 18 318 18 HOH HOH . G 5 HOH A 19 319 20 HOH HOH . G 5 HOH A 20 320 21 HOH HOH . G 5 HOH A 21 321 22 HOH HOH . G 5 HOH A 22 322 23 HOH HOH . G 5 HOH A 23 323 24 HOH HOH . G 5 HOH A 24 324 25 HOH HOH . G 5 HOH A 25 325 26 HOH HOH . G 5 HOH A 26 326 27 HOH HOH . G 5 HOH A 27 327 28 HOH HOH . G 5 HOH A 28 328 29 HOH HOH . G 5 HOH A 29 329 30 HOH HOH . G 5 HOH A 30 330 31 HOH HOH . G 5 HOH A 31 331 32 HOH HOH . G 5 HOH A 32 332 33 HOH HOH . G 5 HOH A 33 333 34 HOH HOH . G 5 HOH A 34 334 35 HOH HOH . G 5 HOH A 35 335 36 HOH HOH . G 5 HOH A 36 336 38 HOH HOH . G 5 HOH A 37 337 39 HOH HOH . G 5 HOH A 38 338 40 HOH HOH . G 5 HOH A 39 339 41 HOH HOH . G 5 HOH A 40 340 42 HOH HOH . G 5 HOH A 41 341 43 HOH HOH . G 5 HOH A 42 342 44 HOH HOH . G 5 HOH A 43 343 45 HOH HOH . G 5 HOH A 44 344 46 HOH HOH . G 5 HOH A 45 345 47 HOH HOH . G 5 HOH A 46 346 48 HOH HOH . G 5 HOH A 47 347 49 HOH HOH . G 5 HOH A 48 348 50 HOH HOH . G 5 HOH A 49 349 51 HOH HOH . G 5 HOH A 50 350 52 HOH HOH . G 5 HOH A 51 351 53 HOH HOH . G 5 HOH A 52 352 55 HOH HOH . G 5 HOH A 53 353 56 HOH HOH . G 5 HOH A 54 354 57 HOH HOH . G 5 HOH A 55 355 58 HOH HOH . G 5 HOH A 56 356 59 HOH HOH . G 5 HOH A 57 357 60 HOH HOH . G 5 HOH A 58 358 61 HOH HOH . G 5 HOH A 59 359 63 HOH HOH . G 5 HOH A 60 360 64 HOH HOH . G 5 HOH A 61 361 66 HOH HOH . G 5 HOH A 62 362 67 HOH HOH . G 5 HOH A 63 363 68 HOH HOH . G 5 HOH A 64 364 69 HOH HOH . G 5 HOH A 65 365 71 HOH HOH . G 5 HOH A 66 366 75 HOH HOH . G 5 HOH A 67 367 76 HOH HOH . G 5 HOH A 68 368 77 HOH HOH . G 5 HOH A 69 369 80 HOH HOH . G 5 HOH A 70 370 81 HOH HOH . G 5 HOH A 71 371 82 HOH HOH . G 5 HOH A 72 372 83 HOH HOH . G 5 HOH A 73 373 84 HOH HOH . G 5 HOH A 74 374 85 HOH HOH . G 5 HOH A 75 375 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 PT PT1 CPT . B . F 4 49.098 -28.351 -5.956 0.46 38.44 ? PT1 CPT 205 A 1 HETATM 2 N N1 CPT . B . F 4 48.396 -30.514 -6.451 0.46 36.31 ? N1 CPT 205 A 1 HETATM 3 CL CL2 CPT . B . F 4 50.042 -28.159 -8.277 0.46 43.49 ? CL2 CPT 205 A 1 HETATM 4 CL CL1 CPT . B . F 4 49.893 -26.266 -5.394 0.46 40.42 ? CL1 CPT 205 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #