data_4N11 # _model_server_result.job_id kGfXO30Ltdr7rJydg3PA_Q _model_server_result.datetime_utc '2024-11-24 04:07:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4n11 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 4N11 # _exptl.entry_id 4N11 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4N11 _cell.length_a 48.478 _cell.length_b 48.478 _cell.length_c 82.391 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4N11 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NZ LYS 26 A LYS 26 1_555 E PT1 CPT . A CPT 204 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.416 ? metalc ? metalc2 A SG CYS 29 A CYS 29 1_555 E PT1 CPT . A CPT 204 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.603 ? metalc ? metalc3 A SG CYS 29 A CYS 29 1_555 E PT1 CPT . A CPT 204 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.603 ? metalc ? metalc4 A SG CYS 29 A CYS 29 1_555 E PT1 CPT . A CPT 204 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.604 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 247 n n C1 H11 MPD sing 248 n n C1 H12 MPD sing 249 n n C1 H13 MPD sing 250 n n C2 O2 MPD sing 251 n n C2 CM MPD sing 252 n n C2 C3 MPD sing 253 n n O2 HO2 MPD sing 254 n n CM HM1 MPD sing 255 n n CM HM2 MPD sing 256 n n CM HM3 MPD sing 257 n n C3 C4 MPD sing 258 n n C3 H31 MPD sing 259 n n C3 H32 MPD sing 260 n n C4 O4 MPD sing 261 n n C4 C5 MPD sing 262 n n C4 H4 MPD sing 263 n n O4 HO4 MPD sing 264 n n C5 H51 MPD sing 265 n n C5 H52 MPD sing 266 n n C5 H53 MPD sing 267 n n # _atom_sites.entry_id 4N11 _atom_sites.fract_transf_matrix[1][1] 0.020628 _atom_sites.fract_transf_matrix[1][2] 0.01191 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023819 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012137 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPO A 1 201 1 MPO MPO . C 3 MPD A 1 202 1 MPD MPD . D 3 MPD A 1 203 2 MPD MPD . E 4 CPT A 1 204 204 CPT CPT . F 5 HOH A 1 301 1 HOH HOH . F 5 HOH A 2 302 2 HOH HOH . F 5 HOH A 3 303 3 HOH HOH . F 5 HOH A 4 304 4 HOH HOH . F 5 HOH A 5 305 5 HOH HOH . F 5 HOH A 6 306 6 HOH HOH . F 5 HOH A 7 307 7 HOH HOH . F 5 HOH A 8 308 8 HOH HOH . F 5 HOH A 9 309 9 HOH HOH . F 5 HOH A 10 310 10 HOH HOH . F 5 HOH A 11 311 11 HOH HOH . F 5 HOH A 12 312 12 HOH HOH . F 5 HOH A 13 313 13 HOH HOH . F 5 HOH A 14 314 14 HOH HOH . F 5 HOH A 15 315 15 HOH HOH . F 5 HOH A 16 316 16 HOH HOH . F 5 HOH A 17 317 17 HOH HOH . F 5 HOH A 18 318 18 HOH HOH . F 5 HOH A 19 319 19 HOH HOH . F 5 HOH A 20 320 20 HOH HOH . F 5 HOH A 21 321 21 HOH HOH . F 5 HOH A 22 322 22 HOH HOH . F 5 HOH A 23 323 23 HOH HOH . F 5 HOH A 24 324 24 HOH HOH . F 5 HOH A 25 325 25 HOH HOH . F 5 HOH A 26 326 26 HOH HOH . F 5 HOH A 27 327 27 HOH HOH . F 5 HOH A 28 328 28 HOH HOH . F 5 HOH A 29 329 29 HOH HOH . F 5 HOH A 30 330 30 HOH HOH . F 5 HOH A 31 331 31 HOH HOH . F 5 HOH A 32 332 32 HOH HOH . F 5 HOH A 33 333 33 HOH HOH . F 5 HOH A 34 334 34 HOH HOH . F 5 HOH A 35 335 35 HOH HOH . F 5 HOH A 36 336 36 HOH HOH . F 5 HOH A 37 337 37 HOH HOH . F 5 HOH A 38 338 38 HOH HOH . F 5 HOH A 39 339 39 HOH HOH . F 5 HOH A 40 340 40 HOH HOH . F 5 HOH A 41 341 41 HOH HOH . F 5 HOH A 42 342 42 HOH HOH . F 5 HOH A 43 343 43 HOH HOH . F 5 HOH A 44 344 44 HOH HOH . F 5 HOH A 45 345 45 HOH HOH . F 5 HOH A 46 346 46 HOH HOH . F 5 HOH A 47 347 47 HOH HOH . F 5 HOH A 48 348 48 HOH HOH . F 5 HOH A 49 349 49 HOH HOH . F 5 HOH A 50 350 50 HOH HOH . F 5 HOH A 51 351 51 HOH HOH . F 5 HOH A 52 352 52 HOH HOH . F 5 HOH A 53 353 53 HOH HOH . F 5 HOH A 54 354 54 HOH HOH . F 5 HOH A 55 355 55 HOH HOH . F 5 HOH A 56 356 56 HOH HOH . F 5 HOH A 57 357 57 HOH HOH . F 5 HOH A 58 358 58 HOH HOH . F 5 HOH A 59 359 59 HOH HOH . F 5 HOH A 60 360 60 HOH HOH . F 5 HOH A 61 361 61 HOH HOH . F 5 HOH A 62 362 62 HOH HOH . F 5 HOH A 63 363 63 HOH HOH . F 5 HOH A 64 364 64 HOH HOH . F 5 HOH A 65 365 65 HOH HOH . F 5 HOH A 66 366 66 HOH HOH . F 5 HOH A 67 367 67 HOH HOH . F 5 HOH A 68 368 68 HOH HOH . F 5 HOH A 69 369 69 HOH HOH . F 5 HOH A 70 370 70 HOH HOH . F 5 HOH A 71 371 71 HOH HOH . F 5 HOH A 72 372 72 HOH HOH . F 5 HOH A 73 373 73 HOH HOH . F 5 HOH A 74 374 74 HOH HOH . F 5 HOH A 75 375 75 HOH HOH . F 5 HOH A 76 376 76 HOH HOH . F 5 HOH A 77 377 77 HOH HOH . F 5 HOH A 78 378 78 HOH HOH . F 5 HOH A 79 379 79 HOH HOH . F 5 HOH A 80 380 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . A . D 3 46.255 17.471 -3.573 0.32 38.54 ? C1 MPD 203 A 1 HETATM 2 C C1 MPD . B . D 3 46.85 18.349 -1.131 0.39 34.16 ? C1 MPD 203 A 1 HETATM 3 C C2 MPD . A . D 3 45.829 17.468 -2.111 0.32 37.27 ? C2 MPD 203 A 1 HETATM 4 C C2 MPD . B . D 3 45.886 17.626 -2.067 0.39 37.24 ? C2 MPD 203 A 1 HETATM 5 O O2 MPD . A . D 3 47.004 17.415 -1.261 0.32 35.98 ? O2 MPD 203 A 1 HETATM 6 O O2 MPD . B . D 3 44.606 18.293 -1.977 0.39 39.34 ? O2 MPD 203 A 1 HETATM 7 C CM MPD . A . D 3 45.116 18.778 -1.817 0.32 37.34 ? CM MPD 203 A 1 HETATM 8 C CM MPD . B . D 3 46.378 17.718 -3.506 0.39 38.4 ? CM MPD 203 A 1 HETATM 9 C C3 MPD . A . D 3 44.892 16.298 -1.801 0.32 36.27 ? C3 MPD 203 A 1 HETATM 10 C C3 MPD . B . D 3 45.71 16.176 -1.62 0.39 36.5 ? C3 MPD 203 A 1 HETATM 11 C C4 MPD . A . D 3 45.23 15.011 -2.556 0.32 39.4 ? C4 MPD 203 A 1 HETATM 12 C C4 MPD . B . D 3 45.109 15.253 -2.682 0.39 39.31 ? C4 MPD 203 A 1 HETATM 13 O O4 MPD . A . D 3 45.861 14.061 -1.717 0.32 37.04 ? O4 MPD 203 A 1 HETATM 14 O O4 MPD . B . D 3 45.384 13.902 -2.348 0.39 38.37 ? O4 MPD 203 A 1 HETATM 15 C C5 MPD . A . D 3 43.964 14.386 -3.136 0.32 38.87 ? C5 MPD 203 A 1 HETATM 16 C C5 MPD . B . D 3 43.604 15.435 -2.834 0.39 37.86 ? C5 MPD 203 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 16 #