data_4N1A # _model_server_result.job_id XC5PzUPs92P8jk71uyenXQ _model_server_result.datetime_utc '2024-11-22 09:37:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4n1a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1401}' # _entry.id 4N1A # _exptl.entry_id 4N1A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4N1A _cell.length_a 216.15 _cell.length_b 216.15 _cell.length_c 186.51 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4N1A _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 ? dimeric 2 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,I,J,K,L 1 1 B,E,M,N,O,P,W 2 1 G,H,U,V 3 1 C,F,Q,R,S,T 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 M N N ? 3 N N N ? 3 Q N N ? 3 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 112 A SER 838 1_555 L MG MG . A MG 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc2 A O GLY 139 A GLY 865 1_555 L MG MG . A MG 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc3 A OG SER 397 A SER 1123 1_555 K MG MG . A MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc4 I O2G ATP . A ATP 1401 1_555 L MG MG . A MG 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc5 I O1B ATP . A ATP 1401 1_555 L MG MG . A MG 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc6 J O2G ATP . A ATP 1402 1_555 K MG MG . A MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc7 J O1B ATP . A ATP 1402 1_555 K MG MG . A MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc8 B OG SER 112 B SER 838 1_555 P MG MG . B MG 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc9 B O GLY 139 B GLY 865 1_555 P MG MG . B MG 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc10 B OG SER 397 B SER 1123 1_555 O MG MG . B MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc11 M O1B ATP . B ATP 1401 1_555 P MG MG . B MG 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc12 M O2G ATP . B ATP 1401 1_555 P MG MG . B MG 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc13 N O2G ATP . B ATP 1402 1_555 O MG MG . B MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.885 ? metalc ? metalc14 N O1B ATP . B ATP 1402 1_555 O MG MG . B MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc15 C OG SER 112 C SER 838 1_555 S MG MG . C MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc16 C O GLY 139 C GLY 865 1_555 S MG MG . C MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc17 C OG SER 397 C SER 1123 1_555 T MG MG . C MG 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc18 Q O1B ATP . C ATP 1401 1_555 S MG MG . C MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc19 Q O2G ATP . C ATP 1401 1_555 S MG MG . C MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc20 R O2G ATP . C ATP 1402 1_555 T MG MG . C MG 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc21 R O1B ATP . C ATP 1402 1_555 T MG MG . C MG 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? metalc ? metalc22 G OG SER 112 E SER 838 1_555 V MG MG . E MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? metalc ? metalc23 G O GLY 139 E GLY 865 1_555 V MG MG . E MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc24 G OG SER 397 E SER 1123 1_555 U MG MG . E MG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4N1A _atom_sites.fract_transf_matrix[1][1] 0.004626 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004626 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005362 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ATP A 1 1401 1316 ATP ATP . J 3 ATP A 1 1402 1317 ATP ATP . K 4 MG A 1 1403 1318 MG MG . L 4 MG A 1 1404 1319 MG MG . M 3 ATP B 1 1401 1316 ATP ATP . N 3 ATP B 1 1402 1317 ATP ATP . O 4 MG B 1 1403 1318 MG MG . P 4 MG B 1 1404 1319 MG MG . Q 3 ATP C 1 1401 1316 ATP ATP . R 3 ATP C 1 1402 1317 ATP ATP . S 4 MG C 1 1403 1318 MG MG . T 4 MG C 1 1404 1319 MG MG . U 4 MG E 1 1401 1316 MG MG . V 4 MG E 1 1402 1317 MG MG . W 5 HOH B 1 1501 1320 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . I 3 -38.561 48.234 -7.328 1 58.39 ? PG ATP 1401 A 1 HETATM 2 O O1G ATP . . . I 3 -37.992 47.22 -8.292 1 38.14 ? O1G ATP 1401 A 1 HETATM 3 O O2G ATP . . . I 3 -39.31 49.366 -7.99 1 72.13 1 O2G ATP 1401 A 1 HETATM 4 O O3G ATP . . . I 3 -39.262 47.641 -6.13 1 59.55 ? O3G ATP 1401 A 1 HETATM 5 P PB ATP . . . I 3 -36.458 50.055 -7.551 1 50.64 ? PB ATP 1401 A 1 HETATM 6 O O1B ATP . . . I 3 -37.441 51.101 -8.02 1 50.92 1 O1B ATP 1401 A 1 HETATM 7 O O2B ATP . . . I 3 -35.594 49.334 -8.557 1 41.21 ? O2B ATP 1401 A 1 HETATM 8 O O3B ATP . . . I 3 -37.266 48.953 -6.701 1 62.52 ? O3B ATP 1401 A 1 HETATM 9 P PA ATP . . . I 3 -35.643 52.251 -6.032 1 51.04 ? PA ATP 1401 A 1 HETATM 10 O O1A ATP . . . I 3 -34.813 53.083 -6.977 1 53.91 1 O1A ATP 1401 A 1 HETATM 11 O O2A ATP . . . I 3 -37.118 52.544 -5.894 1 77.09 ? O2A ATP 1401 A 1 HETATM 12 O O3A ATP . . . I 3 -35.479 50.705 -6.451 1 43.18 ? O3A ATP 1401 A 1 HETATM 13 O O5' ATP . . . I 3 -34.959 52.324 -4.579 1 58.97 ? O5' ATP 1401 A 1 HETATM 14 C C5' ATP . . . I 3 -35.339 51.434 -3.533 1 64.74 ? C5' ATP 1401 A 1 HETATM 15 C C4' ATP . . . I 3 -34.793 51.985 -2.223 1 55.48 ? C4' ATP 1401 A 1 HETATM 16 O O4' ATP . . . I 3 -33.374 52.113 -2.306 1 38.3 ? O4' ATP 1401 A 1 HETATM 17 C C3' ATP . . . I 3 -35.35 53.371 -1.938 1 68.99 ? C3' ATP 1401 A 1 HETATM 18 O O3' ATP . . . I 3 -36.221 53.327 -0.804 1 74.36 ? O3' ATP 1401 A 1 HETATM 19 C C2' ATP . . . I 3 -34.153 54.254 -1.646 1 48.08 ? C2' ATP 1401 A 1 HETATM 20 O O2' ATP . . . I 3 -34.283 54.849 -0.352 1 68.76 ? O2' ATP 1401 A 1 HETATM 21 C C1' ATP . . . I 3 -32.947 53.329 -1.689 1 53.53 ? C1' ATP 1401 A 1 HETATM 22 N N9 ATP . . . I 3 -31.864 53.95 -2.488 1 62.58 ? N9 ATP 1401 A 1 HETATM 23 C C8 ATP . . . I 3 -31.894 54.15 -3.818 1 65.77 ? C8 ATP 1401 A 1 HETATM 24 N N7 ATP . . . I 3 -30.752 54.743 -4.249 1 81.2 ? N7 ATP 1401 A 1 HETATM 25 C C5 ATP . . . I 3 -29.965 54.933 -3.175 1 82.35 ? C5 ATP 1401 A 1 HETATM 26 C C6 ATP . . . I 3 -28.623 55.51 -2.927 1 74.06 ? C6 ATP 1401 A 1 HETATM 27 N N6 ATP . . . I 3 -27.88 56.012 -3.943 1 64.54 ? N6 ATP 1401 A 1 HETATM 28 N N1 ATP . . . I 3 -28.168 55.516 -1.655 1 76.89 ? N1 ATP 1401 A 1 HETATM 29 C C2 ATP . . . I 3 -28.899 55.017 -0.64 1 77.67 ? C2 ATP 1401 A 1 HETATM 30 N N3 ATP . . . I 3 -30.123 54.48 -0.792 1 65.07 ? N3 ATP 1401 A 1 HETATM 31 C C4 ATP . . . I 3 -30.703 54.411 -2.014 1 71.09 ? C4 ATP 1401 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 31 #