data_4N1A
#
_model_server_result.job_id            UEplhu-aLMHHOhG7hUY-gQ 
_model_server_result.datetime_utc      '2024-11-22 09:46:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4n1a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":1401}' 
#
_entry.id    4N1A 
#
_exptl.entry_id    4N1A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4N1A 
_cell.length_a            216.15 
_cell.length_b            216.15 
_cell.length_c            186.51 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4N1A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
? dimeric 2 author_defined_assembly 3 
? dimeric 2 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,I,J,K,L 1 1 
B,E,M,N,O,P,W 2 1 
G,H,U,V 3 1 
C,F,Q,R,S,T 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 J N N 
? 3 M N N 
? 3 N N N 
? 3 Q N N 
? 3 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 112 A SER 838 1_555 L MG MG . A MG 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
metalc ? metalc2 A O GLY 139 A GLY 865 1_555 L MG MG . A MG 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? 
metalc ? metalc3 A OG SER 397 A SER 1123 1_555 K MG MG . A MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
metalc ? metalc4 I O2G ATP . A ATP 1401 1_555 L MG MG . A MG 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? 
metalc ? metalc5 I O1B ATP . A ATP 1401 1_555 L MG MG . A MG 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc6 J O2G ATP . A ATP 1402 1_555 K MG MG . A MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
metalc ? metalc7 J O1B ATP . A ATP 1402 1_555 K MG MG . A MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? 
metalc ? metalc8 B OG SER 112 B SER 838 1_555 P MG MG . B MG 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc9 B O GLY 139 B GLY 865 1_555 P MG MG . B MG 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc10 B OG SER 397 B SER 1123 1_555 O MG MG . B MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc11 M O1B ATP . B ATP 1401 1_555 P MG MG . B MG 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
metalc ? metalc12 M O2G ATP . B ATP 1401 1_555 P MG MG . B MG 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? 
metalc ? metalc13 N O2G ATP . B ATP 1402 1_555 O MG MG . B MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.885 ? 
metalc ? metalc14 N O1B ATP . B ATP 1402 1_555 O MG MG . B MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
metalc ? metalc15 C OG SER 112 C SER 838 1_555 S MG MG . C MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc16 C O GLY 139 C GLY 865 1_555 S MG MG . C MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? 
metalc ? metalc17 C OG SER 397 C SER 1123 1_555 T MG MG . C MG 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc18 Q O1B ATP . C ATP 1401 1_555 S MG MG . C MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc19 Q O2G ATP . C ATP 1401 1_555 S MG MG . C MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? 
metalc ? metalc20 R O2G ATP . C ATP 1402 1_555 T MG MG . C MG 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
metalc ? metalc21 R O1B ATP . C ATP 1402 1_555 T MG MG . C MG 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? 
metalc ? metalc22 G OG SER 112 E SER 838 1_555 V MG MG . E MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? 
metalc ? metalc23 G O GLY 139 E GLY 865 1_555 V MG MG . E MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? 
metalc ? metalc24 G OG SER 397 E SER 1123 1_555 U MG MG . E MG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     4N1A 
_atom_sites.fract_transf_matrix[1][1]    0.004626 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004626 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005362 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 ATP A 1 1401 1316 ATP ATP . 
J 3 ATP A 1 1402 1317 ATP ATP . 
K 4 MG A 1 1403 1318 MG MG . 
L 4 MG A 1 1404 1319 MG MG . 
M 3 ATP B 1 1401 1316 ATP ATP . 
N 3 ATP B 1 1402 1317 ATP ATP . 
O 4 MG B 1 1403 1318 MG MG . 
P 4 MG B 1 1404 1319 MG MG . 
Q 3 ATP C 1 1401 1316 ATP ATP . 
R 3 ATP C 1 1402 1317 ATP ATP . 
S 4 MG C 1 1403 1318 MG MG . 
T 4 MG C 1 1404 1319 MG MG . 
U 4 MG E 1 1401 1316 MG MG . 
V 4 MG E 1 1402 1317 MG MG . 
W 5 HOH B 1 1501 1320 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . Q 3 -40.998 -13.735 3.409 1 87.02 ? PG ATP 1401 C 1 
HETATM 2 O O1G ATP . . . Q 3 -42.061 -12.846 2.807 1 73.91 ? O1G ATP 1401 C 1 
HETATM 3 O O2G ATP . . . Q 3 -40.933 -13.691 4.917 1 64.48 1 O2G ATP 1401 C 1 
HETATM 4 O O3G ATP . . . Q 3 -40.934 -15.128 2.827 1 78.2 ? O3G ATP 1401 C 1 
HETATM 5 P PB ATP . . . Q 3 -39.124 -11.679 3.617 1 68.2 ? PB ATP 1401 C 1 
HETATM 6 O O1B ATP . . . Q 3 -39.384 -11.764 5.102 1 71.03 1 O1B ATP 1401 C 1 
HETATM 7 O O2B ATP . . . Q 3 -39.689 -10.527 2.823 1 52.76 ? O2B ATP 1401 C 1 
HETATM 8 O O3B ATP . . . Q 3 -39.616 -13.055 2.941 1 79.36 ? O3B ATP 1401 C 1 
HETATM 9 P PA ATP . . . Q 3 -36.489 -11.852 4.562 1 70.82 ? PA ATP 1401 C 1 
HETATM 10 O O1A ATP . . . Q 3 -36.083 -10.464 4.991 1 59.83 1 O1A ATP 1401 C 1 
HETATM 11 O O2A ATP . . . Q 3 -37.069 -12.795 5.59 1 69.53 ? O2A ATP 1401 C 1 
HETATM 12 O O3A ATP . . . Q 3 -37.536 -11.708 3.348 1 67.55 ? O3A ATP 1401 C 1 
HETATM 13 O O5' ATP . . . Q 3 -35.22 -12.557 3.865 1 35.72 ? O5' ATP 1401 C 1 
HETATM 14 C C5' ATP . . . Q 3 -35.331 -13.851 3.278 1 63.03 ? C5' ATP 1401 C 1 
HETATM 15 C C4' ATP . . . Q 3 -33.939 -14.33 2.892 1 72.49 ? C4' ATP 1401 C 1 
HETATM 16 O O4' ATP . . . Q 3 -33.292 -13.318 2.119 1 64.75 ? O4' ATP 1401 C 1 
HETATM 17 C C3' ATP . . . Q 3 -33.074 -14.589 4.115 1 65.48 ? C3' ATP 1401 C 1 
HETATM 18 O O3' ATP . . . Q 3 -32.79 -15.986 4.231 1 88.52 ? O3' ATP 1401 C 1 
HETATM 19 C C2' ATP . . . Q 3 -31.785 -13.829 3.885 1 48.85 ? C2' ATP 1401 C 1 
HETATM 20 O O2' ATP . . . Q 3 -30.691 -14.748 3.831 1 52.9 ? O2' ATP 1401 C 1 
HETATM 21 C C1' ATP . . . Q 3 -31.942 -13.128 2.546 1 60.08 ? C1' ATP 1401 C 1 
HETATM 22 N N9 ATP . . . Q 3 -31.672 -11.678 2.712 1 62.93 ? N9 ATP 1401 C 1 
HETATM 23 C C8 ATP . . . Q 3 -32.544 -10.77 3.188 1 57.64 ? C8 ATP 1401 C 1 
HETATM 24 N N7 ATP . . . Q 3 -31.996 -9.528 3.219 1 47.83 ? N7 ATP 1401 C 1 
HETATM 25 C C5 ATP . . . Q 3 -30.739 -9.634 2.753 1 49.21 ? C5 ATP 1401 C 1 
HETATM 26 C C6 ATP . . . Q 3 -29.608 -8.706 2.519 1 43.14 ? C6 ATP 1401 C 1 
HETATM 27 N N6 ATP . . . Q 3 -29.719 -7.385 2.798 1 42.44 ? N6 ATP 1401 C 1 
HETATM 28 N N1 ATP . . . Q 3 -28.465 -9.222 2.019 1 42.6 ? N1 ATP 1401 C 1 
HETATM 29 C C2 ATP . . . Q 3 -28.345 -10.533 1.737 1 57.1 ? C2 ATP 1401 C 1 
HETATM 30 N N3 ATP . . . Q 3 -29.329 -11.432 1.924 1 49.59 ? N3 ATP 1401 C 1 
HETATM 31 C C4 ATP . . . Q 3 -30.53 -11.052 2.421 1 50.09 ? C4 ATP 1401 C 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           248 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           31 
#