data_4N1Z # _model_server_result.job_id wBEExf03sXaEhm07B3myHA _model_server_result.datetime_utc '2024-11-22 13:20:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4n1z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4N1Z # _exptl.entry_id 4N1Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4N1Z _cell.length_a 111.946 _cell.length_b 111.946 _cell.length_c 67.284 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4N1Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 98 F ASP 103 1_555 D MG MG . F MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc2 A OD2 ASP 98 F ASP 103 1_555 E MG MG . F MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc3 A OD2 ASP 102 F ASP 107 1_555 D MG MG . F MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc4 A OD2 ASP 102 F ASP 107 1_555 E MG MG . F MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc5 A OD2 ASP 238 F ASP 243 1_555 C MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc6 C MG MG . F MG 402 1_555 G OAC N1Z . F N1Z 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc7 C MG MG . F MG 402 1_555 G OAE N1Z . F N1Z 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc8 D MG MG . F MG 403 1_555 G OAH N1Z . F N1Z 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? metalc ? metalc9 D MG MG . F MG 403 1_555 G OAF N1Z . F N1Z 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? metalc ? metalc10 E MG MG . F MG 404 1_555 G OAF N1Z . F N1Z 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.645 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 310 n n P O2 PO4 sing 311 n n P O3 PO4 sing 312 n n P O4 PO4 sing 313 n n # _atom_sites.entry_id 4N1Z _atom_sites.fract_transf_matrix[1][1] 0.008933 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008933 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014862 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 F 1 401 2000 PO4 PO4 . C 3 MG F 1 402 3001 MG MG . D 3 MG F 1 403 3002 MG MG . E 3 MG F 1 404 3003 MG MG . F 2 PO4 F 1 405 2001 PO4 PO4 . G 4 N1Z F 1 406 1000 N1Z DRG . H 5 HOH F 1 501 1 HOH HOH . H 5 HOH F 2 502 2 HOH HOH . H 5 HOH F 3 503 4 HOH HOH . H 5 HOH F 4 504 5 HOH HOH . H 5 HOH F 5 505 6 HOH HOH . H 5 HOH F 6 506 7 HOH HOH . H 5 HOH F 7 507 8 HOH HOH . H 5 HOH F 8 508 9 HOH HOH . H 5 HOH F 9 509 10 HOH HOH . H 5 HOH F 10 510 11 HOH HOH . H 5 HOH F 11 511 12 HOH HOH . H 5 HOH F 12 512 13 HOH HOH . H 5 HOH F 13 513 14 HOH HOH . H 5 HOH F 14 514 15 HOH HOH . H 5 HOH F 15 515 17 HOH HOH . H 5 HOH F 16 516 18 HOH HOH . H 5 HOH F 17 517 19 HOH HOH . H 5 HOH F 18 518 20 HOH HOH . H 5 HOH F 19 519 22 HOH HOH . H 5 HOH F 20 520 23 HOH HOH . H 5 HOH F 21 521 24 HOH HOH . H 5 HOH F 22 522 25 HOH HOH . H 5 HOH F 23 523 26 HOH HOH . H 5 HOH F 24 524 27 HOH HOH . H 5 HOH F 25 525 28 HOH HOH . H 5 HOH F 26 526 29 HOH HOH . H 5 HOH F 27 527 30 HOH HOH . H 5 HOH F 28 528 31 HOH HOH . H 5 HOH F 29 529 32 HOH HOH . H 5 HOH F 30 530 33 HOH HOH . H 5 HOH F 31 531 34 HOH HOH . H 5 HOH F 32 532 35 HOH HOH . H 5 HOH F 33 533 41 HOH HOH . H 5 HOH F 34 534 2 HOH HOH . H 5 HOH F 35 535 3 HOH HOH . H 5 HOH F 36 536 4 HOH HOH . H 5 HOH F 37 537 5 HOH HOH . H 5 HOH F 38 538 6 HOH HOH . H 5 HOH F 39 539 7 HOH HOH . H 5 HOH F 40 540 8 HOH HOH . H 5 HOH F 41 541 9 HOH HOH . H 5 HOH F 42 542 10 HOH HOH . H 5 HOH F 43 543 11 HOH HOH . H 5 HOH F 44 544 12 HOH HOH . H 5 HOH F 45 545 13 HOH HOH . H 5 HOH F 46 546 14 HOH HOH . H 5 HOH F 47 547 15 HOH HOH . H 5 HOH F 48 548 16 HOH HOH . H 5 HOH F 49 549 17 HOH HOH . H 5 HOH F 50 550 18 HOH HOH . H 5 HOH F 51 551 20 HOH HOH . H 5 HOH F 52 552 21 HOH HOH . H 5 HOH F 53 553 22 HOH HOH . H 5 HOH F 54 554 23 HOH HOH . H 5 HOH F 55 555 24 HOH HOH . H 5 HOH F 56 556 25 HOH HOH . H 5 HOH F 57 557 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . B 2 35.682 10.402 5.904 1 75.64 ? P PO4 401 F 1 HETATM 2 O O1 PO4 . . . B 2 34.924 9.536 4.91 1 56.94 ? O1 PO4 401 F 1 HETATM 3 O O2 PO4 . . . B 2 36.904 11.026 5.21 1 62.92 ? O2 PO4 401 F 1 HETATM 4 O O3 PO4 . . . B 2 36.075 9.379 6.959 1 70.79 ? O3 PO4 401 F 1 HETATM 5 O O4 PO4 . . . B 2 34.93 11.534 6.627 1 50.63 ? O4 PO4 401 F 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #