data_4N1Z
#
_model_server_result.job_id            jmEyZQVBZECJaUiUctvmRQ 
_model_server_result.datetime_utc      '2024-11-22 13:22:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4n1z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":406}' 
#
_entry.id    4N1Z 
#
_exptl.entry_id    4N1Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.302 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'hydrogen [(1S)-1-hydroxy-2-(3-octyl-1H-imidazol-3-ium-1-yl)-1-phosphonoethyl]phosphonate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4N1Z 
_cell.length_a            111.946 
_cell.length_b            111.946 
_cell.length_c            67.284 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4N1Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 98 F ASP 103 1_555 D MG MG . F MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? 
metalc ? metalc2 A OD2 ASP 98 F ASP 103 1_555 E MG MG . F MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? 
metalc ? metalc3 A OD2 ASP 102 F ASP 107 1_555 D MG MG . F MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc4 A OD2 ASP 102 F ASP 107 1_555 E MG MG . F MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc5 A OD2 ASP 238 F ASP 243 1_555 C MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc6 C MG MG . F MG 402 1_555 G OAC N1Z . F N1Z 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc7 C MG MG . F MG 402 1_555 G OAE N1Z . F N1Z 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc8 D MG MG . F MG 403 1_555 G OAH N1Z . F N1Z 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? 
metalc ? metalc9 D MG MG . F MG 403 1_555 G OAF N1Z . F N1Z 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? 
metalc ? metalc10 E MG MG . F MG 404 1_555 G OAF N1Z . F N1Z 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.645 ? 
#
_chem_comp.formula           'C13 H26 N2 O7 P2' 
_chem_comp.formula_weight    384.302 
_chem_comp.id                N1Z 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'hydrogen [(1S)-1-hydroxy-2-(3-octyl-1H-imidazol-3-ium-1-yl)-1-phosphonoethyl]phosphonate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CAL N1Z sing 237 n n 
CAA HAA N1Z sing 238 n n 
CAA HAAA N1Z sing 239 n n 
CAA HAAB N1Z sing 240 n n 
OAB PAW N1Z doub 241 n n 
OAD CAV N1Z sing 242 n n 
OAD HOAD N1Z sing 243 n n 
OAE HOAE N1Z sing 244 n n 
OAF HOAF N1Z sing 245 n n 
OAH PAX N1Z doub 246 n n 
OAC PAX N1Z sing 247 n n 
OAC HOAC N1Z sing 248 n n 
CAI CAJ N1Z doub 249 n y 
CAI HAI N1Z sing 250 n n 
CAJ HAJ N1Z sing 251 n n 
CAK NAT N1Z sing 252 n y 
CAK NAU N1Z doub 253 n y 
CAK HAK N1Z sing 254 n n 
CAL CAM N1Z sing 255 n n 
CAL HAL N1Z sing 256 n n 
CAL HALA N1Z sing 257 n n 
CAM CAN N1Z sing 258 n n 
CAM HAM N1Z sing 259 n n 
CAM HAMA N1Z sing 260 n n 
CAN CAO N1Z sing 261 n n 
CAN HAN N1Z sing 262 n n 
CAN HANA N1Z sing 263 n n 
CAO CAP N1Z sing 264 n n 
CAO HAO N1Z sing 265 n n 
CAO HAOA N1Z sing 266 n n 
CAP HAP N1Z sing 267 n n 
CAP HAPA N1Z sing 268 n n 
CAQ CAP N1Z sing 269 n n 
CAQ CAR N1Z sing 270 n n 
CAQ HAQ N1Z sing 271 n n 
CAQ HAQA N1Z sing 272 n n 
CAR HAR N1Z sing 273 n n 
CAR HARA N1Z sing 274 n n 
CAS NAT N1Z sing 275 n n 
CAS CAV N1Z sing 276 n n 
CAS HAS N1Z sing 277 n n 
CAS HASA N1Z sing 278 n n 
NAT CAI N1Z sing 279 n y 
NAU CAJ N1Z sing 280 n y 
NAU CAR N1Z sing 281 n n 
CAV PAW N1Z sing 282 n n 
PAW OAE N1Z sing 283 n n 
PAW OAF N1Z sing 284 n n 
PAX OAG N1Z sing 285 n n 
PAX CAV N1Z sing 286 n n 
#
_atom_sites.entry_id                     4N1Z 
_atom_sites.fract_transf_matrix[1][1]    0.008933 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008933 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014862 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 F 1 401 2000 PO4 PO4 . 
C 3 MG F 1 402 3001 MG MG . 
D 3 MG F 1 403 3002 MG MG . 
E 3 MG F 1 404 3003 MG MG . 
F 2 PO4 F 1 405 2001 PO4 PO4 . 
G 4 N1Z F 1 406 1000 N1Z DRG . 
H 5 HOH F 1 501 1 HOH HOH . 
H 5 HOH F 2 502 2 HOH HOH . 
H 5 HOH F 3 503 4 HOH HOH . 
H 5 HOH F 4 504 5 HOH HOH . 
H 5 HOH F 5 505 6 HOH HOH . 
H 5 HOH F 6 506 7 HOH HOH . 
H 5 HOH F 7 507 8 HOH HOH . 
H 5 HOH F 8 508 9 HOH HOH . 
H 5 HOH F 9 509 10 HOH HOH . 
H 5 HOH F 10 510 11 HOH HOH . 
H 5 HOH F 11 511 12 HOH HOH . 
H 5 HOH F 12 512 13 HOH HOH . 
H 5 HOH F 13 513 14 HOH HOH . 
H 5 HOH F 14 514 15 HOH HOH . 
H 5 HOH F 15 515 17 HOH HOH . 
H 5 HOH F 16 516 18 HOH HOH . 
H 5 HOH F 17 517 19 HOH HOH . 
H 5 HOH F 18 518 20 HOH HOH . 
H 5 HOH F 19 519 22 HOH HOH . 
H 5 HOH F 20 520 23 HOH HOH . 
H 5 HOH F 21 521 24 HOH HOH . 
H 5 HOH F 22 522 25 HOH HOH . 
H 5 HOH F 23 523 26 HOH HOH . 
H 5 HOH F 24 524 27 HOH HOH . 
H 5 HOH F 25 525 28 HOH HOH . 
H 5 HOH F 26 526 29 HOH HOH . 
H 5 HOH F 27 527 30 HOH HOH . 
H 5 HOH F 28 528 31 HOH HOH . 
H 5 HOH F 29 529 32 HOH HOH . 
H 5 HOH F 30 530 33 HOH HOH . 
H 5 HOH F 31 531 34 HOH HOH . 
H 5 HOH F 32 532 35 HOH HOH . 
H 5 HOH F 33 533 41 HOH HOH . 
H 5 HOH F 34 534 2 HOH HOH . 
H 5 HOH F 35 535 3 HOH HOH . 
H 5 HOH F 36 536 4 HOH HOH . 
H 5 HOH F 37 537 5 HOH HOH . 
H 5 HOH F 38 538 6 HOH HOH . 
H 5 HOH F 39 539 7 HOH HOH . 
H 5 HOH F 40 540 8 HOH HOH . 
H 5 HOH F 41 541 9 HOH HOH . 
H 5 HOH F 42 542 10 HOH HOH . 
H 5 HOH F 43 543 11 HOH HOH . 
H 5 HOH F 44 544 12 HOH HOH . 
H 5 HOH F 45 545 13 HOH HOH . 
H 5 HOH F 46 546 14 HOH HOH . 
H 5 HOH F 47 547 15 HOH HOH . 
H 5 HOH F 48 548 16 HOH HOH . 
H 5 HOH F 49 549 17 HOH HOH . 
H 5 HOH F 50 550 18 HOH HOH . 
H 5 HOH F 51 551 20 HOH HOH . 
H 5 HOH F 52 552 21 HOH HOH . 
H 5 HOH F 53 553 22 HOH HOH . 
H 5 HOH F 54 554 23 HOH HOH . 
H 5 HOH F 55 555 24 HOH HOH . 
H 5 HOH F 56 556 25 HOH HOH . 
H 5 HOH F 57 557 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA N1Z . . . G 4 24.211 19.93 3.737 1 39.5 ? CAA N1Z 406 F 1 
HETATM 2 O OAB N1Z . . . G 4 33.084 16.103 10.286 1 31.31 ? OAB N1Z 406 F 1 
HETATM 3 O OAG N1Z . . . G 4 35.85 14.392 6.331 1 33.9 ? OAG N1Z 406 F 1 
HETATM 4 O OAD N1Z . . . G 4 34.957 17.699 7.284 1 39.38 ? OAD N1Z 406 F 1 
HETATM 5 O OAE N1Z . . . G 4 35.344 16.488 10.423 1 27.23 ? OAE N1Z 406 F 1 
HETATM 6 O OAF N1Z . . . G 4 33.674 18.311 9.214 1 37.85 ? OAF N1Z 406 F 1 
HETATM 7 O OAH N1Z . . . G 4 36.403 16.399 6.468 1 29.86 ? OAH N1Z 406 F 1 
HETATM 8 O OAC N1Z . . . G 4 37.233 15.301 8.614 1 34.54 ? OAC N1Z 406 F 1 
HETATM 9 C CAI N1Z . . . G 4 32.558 13.999 8.459 1 45.62 ? CAI N1Z 406 F 1 
HETATM 10 C CAJ N1Z . . . G 4 31.309 13.894 8.935 1 36.13 ? CAJ N1Z 406 F 1 
HETATM 11 C CAK N1Z . . . G 4 31.353 15.626 7.639 1 36.61 ? CAK N1Z 406 F 1 
HETATM 12 C CAL N1Z . . . G 4 24.476 19.559 5.247 1 35.97 ? CAL N1Z 406 F 1 
HETATM 13 C CAM N1Z . . . G 4 25.275 18.274 5.391 1 35.83 ? CAM N1Z 406 F 1 
HETATM 14 C CAN N1Z . . . G 4 26.621 18.5 6.119 1 38.93 ? CAN N1Z 406 F 1 
HETATM 15 C CAO N1Z . . . G 4 27.393 17.172 6.158 1 37.1 ? CAO N1Z 406 F 1 
HETATM 16 C CAP N1Z . . . G 4 27.935 16.855 7.54 1 41.73 ? CAP N1Z 406 F 1 
HETATM 17 C CAQ N1Z . . . G 4 28.484 15.444 7.504 1 40.7 ? CAQ N1Z 406 F 1 
HETATM 18 C CAR N1Z . . . G 4 29.241 15.136 8.756 1 37.66 ? CAR N1Z 406 F 1 
HETATM 19 C CAS N1Z . . . G 4 33.676 15.471 6.983 1 41.87 ? CAS N1Z 406 F 1 
HETATM 20 N NAT N1Z . . . G 4 32.558 15.061 7.673 1 41.05 ? NAT N1Z 406 F 1 
HETATM 21 N NAU N1Z . . . G 4 30.601 14.881 8.434 1 36.43 ? NAU N1Z 406 F 1 
HETATM 22 C CAV N1Z . . . G 4 34.664 16.296 7.844 1 39.18 ? CAV N1Z 406 F 1 
HETATM 23 P PAW N1Z . . . G 4 34.179 16.814 9.5 1 31.45 ? PAW N1Z 406 F 1 
HETATM 24 P PAX N1Z . . . G 4 36.118 15.413 7.584 1 36.17 ? PAX N1Z 406 F 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           24 
#