data_4N21 # _model_server_result.job_id bClYOGHyq98Ra7nPUAwRew _model_server_result.datetime_utc '2024-10-28 02:35:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4n21 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":401}' # _entry.id 4N21 # _exptl.entry_id 4N21 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 102.32 _cell.angle_beta 89.99 _cell.angle_gamma 119.98 _cell.entry_id 4N21 _cell.length_a 46.676 _cell.length_b 46.713 _cell.length_c 109.451 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4N21 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,L,M,R,S,T 1 1 D,E,F,N,O,P,Q,U,V,W 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id E _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 94 _struct_conn.ptnr1_auth_asym_id E _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 315 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 102 _struct_conn.ptnr2_auth_asym_id E _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 323 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.037 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 237 n n C1 H11 MPD sing 238 n n C1 H12 MPD sing 239 n n C1 H13 MPD sing 240 n n C2 O2 MPD sing 241 n n C2 CM MPD sing 242 n n C2 C3 MPD sing 243 n n O2 HO2 MPD sing 244 n n CM HM1 MPD sing 245 n n CM HM2 MPD sing 246 n n CM HM3 MPD sing 247 n n C3 C4 MPD sing 248 n n C3 H31 MPD sing 249 n n C3 H32 MPD sing 250 n n C4 O4 MPD sing 251 n n C4 C5 MPD sing 252 n n C4 H4 MPD sing 253 n n O4 HO4 MPD sing 254 n n C5 H51 MPD sing 255 n n C5 H52 MPD sing 256 n n C5 H53 MPD sing 257 n n # _atom_sites.entry_id 4N21 _atom_sites.fract_transf_matrix[1][1] 0.021424 _atom_sites.fract_transf_matrix[1][2] 0.012359 _atom_sites.fract_transf_matrix[1][3] 0.003134 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024714 _atom_sites.fract_transf_matrix[2][3] 0.006276 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009427 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 MPD A 1 401 3 MPD MPD . H 2 MPD A 1 402 11 MPD MPD . I 2 MPD B 1 401 1 MPD MPD . J 2 MPD B 1 402 7 MPD MPD . K 2 MPD B 1 403 8 MPD MPD . L 2 MPD C 1 401 4 MPD MPD . M 2 MPD C 1 402 10 MPD MPD . N 2 MPD D 1 401 2 MPD MPD . O 2 MPD D 1 402 6 MPD MPD . P 2 MPD E 1 401 5 MPD MPD . Q 2 MPD E 1 402 9 MPD MPD . R 3 HOH A 1 501 4 HOH HOH . R 3 HOH A 2 502 9 HOH HOH . R 3 HOH A 3 503 34 HOH HOH . R 3 HOH A 4 504 36 HOH HOH . R 3 HOH A 5 505 40 HOH HOH . R 3 HOH A 6 506 46 HOH HOH . R 3 HOH A 7 507 76 HOH HOH . R 3 HOH A 8 508 77 HOH HOH . R 3 HOH A 9 509 125 HOH HOH . R 3 HOH A 10 510 127 HOH HOH . R 3 HOH A 11 511 131 HOH HOH . R 3 HOH A 12 512 140 HOH HOH . R 3 HOH A 13 513 141 HOH HOH . R 3 HOH A 14 514 151 HOH HOH . R 3 HOH A 15 515 161 HOH HOH . R 3 HOH A 16 516 163 HOH HOH . R 3 HOH A 17 517 164 HOH HOH . R 3 HOH A 18 518 168 HOH HOH . R 3 HOH A 19 519 172 HOH HOH . R 3 HOH A 20 520 180 HOH HOH . R 3 HOH A 21 521 186 HOH HOH . R 3 HOH A 22 522 187 HOH HOH . R 3 HOH A 23 523 202 HOH HOH . R 3 HOH A 24 524 204 HOH HOH . R 3 HOH A 25 525 211 HOH HOH . R 3 HOH A 26 526 212 HOH HOH . R 3 HOH A 27 527 213 HOH HOH . R 3 HOH A 28 528 214 HOH HOH . R 3 HOH A 29 529 231 HOH HOH . R 3 HOH A 30 530 232 HOH HOH . R 3 HOH A 31 531 240 HOH HOH . R 3 HOH A 32 532 257 HOH HOH . R 3 HOH A 33 533 267 HOH HOH . R 3 HOH A 34 534 269 HOH HOH . R 3 HOH A 35 535 275 HOH HOH . R 3 HOH A 36 536 286 HOH HOH . R 3 HOH A 37 537 294 HOH HOH . R 3 HOH A 38 538 295 HOH HOH . S 3 HOH B 1 501 5 HOH HOH . S 3 HOH B 2 502 16 HOH HOH . S 3 HOH B 3 503 18 HOH HOH . S 3 HOH B 4 504 20 HOH HOH . S 3 HOH B 5 505 21 HOH HOH . S 3 HOH B 6 506 24 HOH HOH . S 3 HOH B 7 507 60 HOH HOH . S 3 HOH B 8 508 61 HOH HOH . S 3 HOH B 9 509 67 HOH HOH . S 3 HOH B 10 510 120 HOH HOH . S 3 HOH B 11 511 130 HOH HOH . S 3 HOH B 12 512 142 HOH HOH . S 3 HOH B 13 513 146 HOH HOH . S 3 HOH B 14 514 147 HOH HOH . S 3 HOH B 15 515 149 HOH HOH . S 3 HOH B 16 516 171 HOH HOH . S 3 HOH B 17 517 175 HOH HOH . S 3 HOH B 18 518 194 HOH HOH . S 3 HOH B 19 519 199 HOH HOH . S 3 HOH B 20 520 200 HOH HOH . S 3 HOH B 21 521 208 HOH HOH . S 3 HOH B 22 522 215 HOH HOH . S 3 HOH B 23 523 216 HOH HOH . S 3 HOH B 24 524 217 HOH HOH . S 3 HOH B 25 525 226 HOH HOH . S 3 HOH B 26 526 227 HOH HOH . S 3 HOH B 27 527 234 HOH HOH . S 3 HOH B 28 528 237 HOH HOH . S 3 HOH B 29 529 242 HOH HOH . S 3 HOH B 30 530 243 HOH HOH . S 3 HOH B 31 531 249 HOH HOH . S 3 HOH B 32 532 255 HOH HOH . S 3 HOH B 33 533 258 HOH HOH . S 3 HOH B 34 534 265 HOH HOH . S 3 HOH B 35 535 274 HOH HOH . S 3 HOH B 36 536 291 HOH HOH . S 3 HOH B 37 537 296 HOH HOH . T 3 HOH C 1 501 1 HOH HOH . T 3 HOH C 2 502 6 HOH HOH . T 3 HOH C 3 503 8 HOH HOH . T 3 HOH C 4 504 11 HOH HOH . T 3 HOH C 5 505 26 HOH HOH . T 3 HOH C 6 506 31 HOH HOH . T 3 HOH C 7 507 66 HOH HOH . T 3 HOH C 8 508 81 HOH HOH . T 3 HOH C 9 509 84 HOH HOH . T 3 HOH C 10 510 99 HOH HOH . T 3 HOH C 11 511 102 HOH HOH . T 3 HOH C 12 512 105 HOH HOH . T 3 HOH C 13 513 110 HOH HOH . T 3 HOH C 14 514 111 HOH HOH . T 3 HOH C 15 515 112 HOH HOH . T 3 HOH C 16 516 124 HOH HOH . T 3 HOH C 17 517 126 HOH HOH . T 3 HOH C 18 518 133 HOH HOH . T 3 HOH C 19 519 144 HOH HOH . T 3 HOH C 20 520 145 HOH HOH . T 3 HOH C 21 521 154 HOH HOH . T 3 HOH C 22 522 176 HOH HOH . T 3 HOH C 23 523 193 HOH HOH . T 3 HOH C 24 524 196 HOH HOH . T 3 HOH C 25 525 197 HOH HOH . T 3 HOH C 26 526 222 HOH HOH . T 3 HOH C 27 527 236 HOH HOH . T 3 HOH C 28 528 238 HOH HOH . T 3 HOH C 29 529 245 HOH HOH . T 3 HOH C 30 530 252 HOH HOH . T 3 HOH C 31 531 264 HOH HOH . T 3 HOH C 32 532 271 HOH HOH . T 3 HOH C 33 533 283 HOH HOH . T 3 HOH C 34 534 290 HOH HOH . T 3 HOH C 35 535 297 HOH HOH . T 3 HOH C 36 536 300 HOH HOH . T 3 HOH C 37 537 303 HOH HOH . U 3 HOH D 1 501 22 HOH HOH . U 3 HOH D 2 502 23 HOH HOH . U 3 HOH D 3 503 38 HOH HOH . U 3 HOH D 4 504 39 HOH HOH . U 3 HOH D 5 505 51 HOH HOH . U 3 HOH D 6 506 54 HOH HOH . U 3 HOH D 7 507 56 HOH HOH . U 3 HOH D 8 508 82 HOH HOH . U 3 HOH D 9 509 119 HOH HOH . U 3 HOH D 10 510 132 HOH HOH . U 3 HOH D 11 511 135 HOH HOH . U 3 HOH D 12 512 136 HOH HOH . U 3 HOH D 13 513 155 HOH HOH . U 3 HOH D 14 514 160 HOH HOH . U 3 HOH D 15 515 162 HOH HOH . U 3 HOH D 16 516 165 HOH HOH . U 3 HOH D 17 517 185 HOH HOH . U 3 HOH D 18 518 188 HOH HOH . U 3 HOH D 19 519 198 HOH HOH . U 3 HOH D 20 520 229 HOH HOH . U 3 HOH D 21 521 248 HOH HOH . U 3 HOH D 22 522 256 HOH HOH . U 3 HOH D 23 523 262 HOH HOH . U 3 HOH D 24 524 266 HOH HOH . U 3 HOH D 25 525 282 HOH HOH . U 3 HOH D 26 526 285 HOH HOH . U 3 HOH D 27 527 289 HOH HOH . U 3 HOH D 28 528 299 HOH HOH . U 3 HOH D 29 529 306 HOH HOH . V 3 HOH E 1 501 7 HOH HOH . V 3 HOH E 2 502 15 HOH HOH . V 3 HOH E 3 503 17 HOH HOH . V 3 HOH E 4 504 25 HOH HOH . V 3 HOH E 5 505 33 HOH HOH . V 3 HOH E 6 506 49 HOH HOH . V 3 HOH E 7 507 73 HOH HOH . V 3 HOH E 8 508 78 HOH HOH . V 3 HOH E 9 509 80 HOH HOH . V 3 HOH E 10 510 83 HOH HOH . V 3 HOH E 11 511 128 HOH HOH . V 3 HOH E 12 512 138 HOH HOH . V 3 HOH E 13 513 143 HOH HOH . V 3 HOH E 14 514 153 HOH HOH . V 3 HOH E 15 515 157 HOH HOH . V 3 HOH E 16 516 158 HOH HOH . V 3 HOH E 17 517 166 HOH HOH . V 3 HOH E 18 518 170 HOH HOH . V 3 HOH E 19 519 177 HOH HOH . V 3 HOH E 20 520 179 HOH HOH . V 3 HOH E 21 521 181 HOH HOH . V 3 HOH E 22 522 182 HOH HOH . V 3 HOH E 23 523 183 HOH HOH . V 3 HOH E 24 524 184 HOH HOH . V 3 HOH E 25 525 189 HOH HOH . V 3 HOH E 26 526 191 HOH HOH . V 3 HOH E 27 527 210 HOH HOH . V 3 HOH E 28 528 218 HOH HOH . V 3 HOH E 29 529 230 HOH HOH . V 3 HOH E 30 530 233 HOH HOH . V 3 HOH E 31 531 235 HOH HOH . V 3 HOH E 32 532 239 HOH HOH . V 3 HOH E 33 533 241 HOH HOH . V 3 HOH E 34 534 244 HOH HOH . V 3 HOH E 35 535 254 HOH HOH . V 3 HOH E 36 536 268 HOH HOH . V 3 HOH E 37 537 270 HOH HOH . V 3 HOH E 38 538 276 HOH HOH . V 3 HOH E 39 539 277 HOH HOH . V 3 HOH E 40 540 278 HOH HOH . V 3 HOH E 41 541 279 HOH HOH . V 3 HOH E 42 542 281 HOH HOH . V 3 HOH E 43 543 284 HOH HOH . V 3 HOH E 44 544 287 HOH HOH . V 3 HOH E 45 545 288 HOH HOH . V 3 HOH E 46 546 301 HOH HOH . V 3 HOH E 47 547 302 HOH HOH . W 3 HOH F 1 401 3 HOH HOH . W 3 HOH F 2 402 13 HOH HOH . W 3 HOH F 3 403 19 HOH HOH . W 3 HOH F 4 404 29 HOH HOH . W 3 HOH F 5 405 43 HOH HOH . W 3 HOH F 6 406 44 HOH HOH . W 3 HOH F 7 407 50 HOH HOH . W 3 HOH F 8 408 64 HOH HOH . W 3 HOH F 9 409 85 HOH HOH . W 3 HOH F 10 410 93 HOH HOH . W 3 HOH F 11 411 94 HOH HOH . W 3 HOH F 12 412 95 HOH HOH . W 3 HOH F 13 413 106 HOH HOH . W 3 HOH F 14 414 109 HOH HOH . W 3 HOH F 15 415 129 HOH HOH . W 3 HOH F 16 416 134 HOH HOH . W 3 HOH F 17 417 139 HOH HOH . W 3 HOH F 18 418 148 HOH HOH . W 3 HOH F 19 419 150 HOH HOH . W 3 HOH F 20 420 156 HOH HOH . W 3 HOH F 21 421 159 HOH HOH . W 3 HOH F 22 422 169 HOH HOH . W 3 HOH F 23 423 190 HOH HOH . W 3 HOH F 24 424 195 HOH HOH . W 3 HOH F 25 425 205 HOH HOH . W 3 HOH F 26 426 206 HOH HOH . W 3 HOH F 27 427 207 HOH HOH . W 3 HOH F 28 428 209 HOH HOH . W 3 HOH F 29 429 220 HOH HOH . W 3 HOH F 30 430 221 HOH HOH . W 3 HOH F 31 431 223 HOH HOH . W 3 HOH F 32 432 224 HOH HOH . W 3 HOH F 33 433 225 HOH HOH . W 3 HOH F 34 434 246 HOH HOH . W 3 HOH F 35 435 247 HOH HOH . W 3 HOH F 36 436 250 HOH HOH . W 3 HOH F 37 437 251 HOH HOH . W 3 HOH F 38 438 253 HOH HOH . W 3 HOH F 39 439 261 HOH HOH . W 3 HOH F 40 440 292 HOH HOH . W 3 HOH F 41 441 293 HOH HOH . W 3 HOH F 42 442 298 HOH HOH . W 3 HOH F 43 443 304 HOH HOH . W 3 HOH F 44 444 305 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . L 2 33.816 3.444 51.917 1 72 ? C1 MPD 401 C 1 HETATM 2 C C2 MPD . . . L 2 32.443 2.872 52.258 1 69.93 ? C2 MPD 401 C 1 HETATM 3 O O2 MPD . . . L 2 31.542 3.949 52.525 1 67.71 ? O2 MPD 401 C 1 HETATM 4 C CM MPD . . . L 2 31.924 2.11 51.05 1 67.63 ? CM MPD 401 C 1 HETATM 5 C C3 MPD . . . L 2 32.453 1.93 53.471 1 67.27 ? C3 MPD 401 C 1 HETATM 6 C C4 MPD . . . L 2 33.248 2.416 54.688 1 65.89 ? C4 MPD 401 C 1 HETATM 7 O O4 MPD . . . L 2 33.13 3.835 54.852 1 70.41 ? O4 MPD 401 C 1 HETATM 8 C C5 MPD . . . L 2 32.768 1.749 55.974 1 57.57 ? C5 MPD 401 C 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 230 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #