data_4N27
#
_model_server_result.job_id            95xoF439stxn-Jgdky6kmg 
_model_server_result.datetime_utc      '2024-11-30 06:08:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4n27 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":202}' 
#
_entry.id    4N27 
#
_exptl.entry_id    4N27 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.489 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.84 
_cell.angle_gamma         90 
_cell.entry_id            4N27 
_cell.length_a            102.43 
_cell.length_b            57.44 
_cell.length_c            127.61 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4N27 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,J,K,L,S,T,U 1 1 
D,E,F,M,N,O,P,Q,R,V,W,X 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 I N N 
? 3 L N N 
? 3 N N N 
? 3 P N N 
? 3 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 87 A HIS 67 1_555 G ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc2 A NE2 HIS 104 A HIS 84 1_555 K ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc3 A NE2 HIS 109 A HIS 89 1_555 G ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc4 G ZN ZN . A ZN 201 1_555 S O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc5 G ZN ZN . A ZN 201 1_555 B NE2 HIS 104 B HIS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc6 G ZN ZN . A ZN 201 1_555 T O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc7 S O HOH . A HOH 302 1_555 K ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
metalc ? metalc8 B ND1 HIS 87 B HIS 67 1_555 J ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? 
metalc ? metalc9 B NE2 HIS 109 B HIS 89 1_555 J ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.817 ? 
metalc ? metalc10 J ZN ZN . B ZN 201 1_555 C NE2 HIS 104 C HIS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc11 J ZN ZN . B ZN 201 1_555 U O HOH . C HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
metalc ? metalc12 J ZN ZN . B ZN 201 1_555 U O HOH . C HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc13 C ND1 HIS 87 C HIS 67 1_555 K ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
metalc ? metalc14 C NE2 HIS 109 C HIS 89 1_555 K ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? 
metalc ? metalc15 K ZN ZN . C ZN 201 1_555 U O HOH . C HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc16 D ND1 HIS 87 D HIS 67 1_555 M ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? 
metalc ? metalc17 D NE2 HIS 104 D HIS 84 1_555 R ZN ZN . F ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
metalc ? metalc18 D NE2 HIS 109 D HIS 89 1_555 M ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? 
metalc ? metalc19 M ZN ZN . D ZN 201 1_555 V O HOH . D HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc20 M ZN ZN . D ZN 201 1_555 E NE2 HIS 104 E HIS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
metalc ? metalc21 M ZN ZN . D ZN 201 1_555 W O HOH . E HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc22 V O HOH . D HOH 302 1_555 R ZN ZN . F ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc23 E ND1 HIS 87 E HIS 67 1_555 O ZN ZN . E ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
metalc ? metalc24 E NE2 HIS 109 E HIS 89 1_555 O ZN ZN . E ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? 
metalc ? metalc25 O ZN ZN . E ZN 201 1_555 W O HOH . E HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc26 O ZN ZN . E ZN 201 1_555 F NE2 HIS 104 F HIS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc27 O ZN ZN . E ZN 201 1_555 X O HOH . F HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
metalc ? metalc28 F ND1 HIS 87 F HIS 67 1_555 R ZN ZN . F ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc29 F NE2 HIS 109 F HIS 89 1_555 R ZN ZN . F ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
metalc ? metalc30 R ZN ZN . F ZN 201 1_555 X O HOH . F HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
#
_chem_comp.formula           'C18 H38 O9' 
_chem_comp.formula_weight    398.489 
_chem_comp.id                PE5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '2-(2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL;POLYETHYLENE GLYCOL PEG400' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C48 C50 PE5 sing 237 n n 
C48 H481 PE5 sing 238 n n 
C48 H482 PE5 sing 239 n n 
C48 H483 PE5 sing 240 n n 
C50 O1 PE5 sing 241 n n 
C50 H501 PE5 sing 242 n n 
C50 H502 PE5 sing 243 n n 
O1 C1 PE5 sing 244 n n 
C1 C2 PE5 sing 245 n n 
C1 H11 PE5 sing 246 n n 
C1 H12 PE5 sing 247 n n 
C2 O2 PE5 sing 248 n n 
C2 H21 PE5 sing 249 n n 
C2 H22 PE5 sing 250 n n 
O2 C3 PE5 sing 251 n n 
C3 C4 PE5 sing 252 n n 
C3 H31 PE5 sing 253 n n 
C3 H32 PE5 sing 254 n n 
C4 O3 PE5 sing 255 n n 
C4 H41 PE5 sing 256 n n 
C4 H42 PE5 sing 257 n n 
O3 C5 PE5 sing 258 n n 
C5 C6 PE5 sing 259 n n 
C5 H51 PE5 sing 260 n n 
C5 H52A PE5 sing 261 n n 
C6 O4 PE5 sing 262 n n 
C6 H61 PE5 sing 263 n n 
C6 H62 PE5 sing 264 n n 
O4 C7 PE5 sing 265 n n 
C7 C8 PE5 sing 266 n n 
C7 H71 PE5 sing 267 n n 
C7 H72 PE5 sing 268 n n 
C8 O5 PE5 sing 269 n n 
C8 H81 PE5 sing 270 n n 
C8 H82 PE5 sing 271 n n 
O5 C9 PE5 sing 272 n n 
C9 C10 PE5 sing 273 n n 
C9 H91 PE5 sing 274 n n 
C9 H92 PE5 sing 275 n n 
C10 O6 PE5 sing 276 n n 
C10 H101 PE5 sing 277 n n 
C10 H102 PE5 sing 278 n n 
O6 C11 PE5 sing 279 n n 
C11 C12 PE5 sing 280 n n 
C11 H111 PE5 sing 281 n n 
C11 H112 PE5 sing 282 n n 
C12 O7 PE5 sing 283 n n 
C12 H121 PE5 sing 284 n n 
C12 H122 PE5 sing 285 n n 
O7 C13 PE5 sing 286 n n 
C13 C14 PE5 sing 287 n n 
C13 H131 PE5 sing 288 n n 
C13 H132 PE5 sing 289 n n 
C14 O8 PE5 sing 290 n n 
C14 H141 PE5 sing 291 n n 
C14 H142 PE5 sing 292 n n 
O8 C15 PE5 sing 293 n n 
C15 C16 PE5 sing 294 n n 
C15 H151 PE5 sing 295 n n 
C15 H152 PE5 sing 296 n n 
C16 O52 PE5 sing 297 n n 
C16 H161 PE5 sing 298 n n 
C16 H162 PE5 sing 299 n n 
O52 H52 PE5 sing 300 n n 
#
_atom_sites.entry_id                     4N27 
_atom_sites.fract_transf_matrix[1][1]    0.009763 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000314 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017409 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00784 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 ZN A 1 201 5 ZN ZN . 
H 3 PE5 A 1 202 1 PE5 PE5 . 
I 3 PE5 A 1 203 1 PE5 PE5 . 
J 2 ZN B 1 201 6 ZN ZN . 
K 2 ZN C 1 201 4 ZN ZN . 
L 3 PE5 C 1 202 1 PE5 PE5 . 
M 2 ZN D 1 201 1 ZN ZN . 
N 3 PE5 D 1 202 1 PE5 PE5 . 
O 2 ZN E 1 201 2 ZN ZN . 
P 3 PE5 E 1 202 1 PE5 PE5 . 
Q 3 PE5 E 1 203 1 PE5 PE5 . 
R 2 ZN F 1 201 3 ZN ZN . 
S 4 HOH A 1 301 7 HOH HOH . 
S 4 HOH A 2 302 10 HOH HOH . 
S 4 HOH A 3 303 16 HOH HOH . 
T 4 HOH B 1 301 8 HOH HOH . 
T 4 HOH B 2 302 14 HOH HOH . 
U 4 HOH C 1 301 5 HOH HOH . 
U 4 HOH C 2 302 6 HOH HOH . 
U 4 HOH C 3 303 9 HOH HOH . 
U 4 HOH C 4 304 15 HOH HOH . 
V 4 HOH D 1 301 2 HOH HOH . 
V 4 HOH D 2 302 12 HOH HOH . 
V 4 HOH D 3 303 17 HOH HOH . 
W 4 HOH E 1 301 3 HOH HOH . 
W 4 HOH E 2 302 11 HOH HOH . 
X 4 HOH F 1 301 4 HOH HOH . 
X 4 HOH F 2 302 13 HOH HOH . 
X 4 HOH F 3 303 18 HOH HOH . 
X 4 HOH F 4 304 19 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C48 PE5 . . . L 3 -16.915 11.146 -53.02 1 57.75 ? C48 PE5 202 C 1 
HETATM 2 C C50 PE5 . . . L 3 -17.615 12.147 -53.882 1 67.35 ? C50 PE5 202 C 1 
HETATM 3 O O1 PE5 . . . L 3 -16.687 12.829 -54.65 1 87.42 ? O1 PE5 202 C 1 
HETATM 4 C C1 PE5 . . . L 3 -17.055 13.611 -55.739 1 95.13 ? C1 PE5 202 C 1 
HETATM 5 C C2 PE5 . . . L 3 -18.288 13.095 -56.422 1 104.2 ? C2 PE5 202 C 1 
HETATM 6 O O2 PE5 . . . L 3 -17.992 12.399 -57.594 1 121.93 ? O2 PE5 202 C 1 
HETATM 7 C C3 PE5 . . . L 3 -18.787 11.33 -58.016 1 105.17 ? C3 PE5 202 C 1 
HETATM 8 C C4 PE5 . . . L 3 -18.212 10.623 -59.214 1 79.31 ? C4 PE5 202 C 1 
HETATM 9 O O3 PE5 . . . L 3 -18.955 9.502 -59.553 1 76.97 ? O3 PE5 202 C 1 
HETATM 10 C C5 PE5 . . . L 3 -18.799 8.917 -60.8 1 70.68 ? C5 PE5 202 C 1 
HETATM 11 C C6 PE5 . . . L 3 -19.595 7.652 -60.914 1 59.37 ? C6 PE5 202 C 1 
HETATM 12 O O4 PE5 . . . L 3 -19.919 7.409 -62.239 1 58.05 ? O4 PE5 202 C 1 
HETATM 13 C C7 PE5 . . . L 3 -21.233 7.352 -62.674 1 57.24 ? C7 PE5 202 C 1 
HETATM 14 C C8 PE5 . . . L 3 -21.522 8.459 -63.645 1 83.76 ? C8 PE5 202 C 1 
HETATM 15 O O5 PE5 . . . L 3 -22.814 8.378 -64.139 1 76.21 ? O5 PE5 202 C 1 
HETATM 16 C C9 PE5 . . . L 3 -23.22 9.182 -65.185 1 78.2 ? C9 PE5 202 C 1 
HETATM 17 C C10 PE5 . . . L 3 -24.289 8.48 -65.955 1 70.76 ? C10 PE5 202 C 1 
HETATM 18 O O6 PE5 . . . L 3 -25.327 9.347 -66.237 1 89.76 ? O6 PE5 202 C 1 
HETATM 19 C C11 PE5 . . . L 3 -26.025 9.202 -67.422 1 84.14 ? C11 PE5 202 C 1 
HETATM 20 C C12 PE5 . . . L 3 -27.493 9.168 -67.151 1 97.74 ? C12 PE5 202 C 1 
HETATM 21 O O7 PE5 . . . L 3 -28.144 8.532 -68.189 1 89.86 ? O7 PE5 202 C 1 
HETATM 22 C C13 PE5 . . . L 3 -27.964 7.176 -68.383 1 90.61 ? C13 PE5 202 C 1 
HETATM 23 C C14 PE5 . . . L 3 -27.032 6.913 -69.531 1 95.69 ? C14 PE5 202 C 1 
HETATM 24 O O8 PE5 . . . L 3 -26.882 5.554 -69.796 1 88.89 ? O8 PE5 202 C 1 
HETATM 25 C C15 PE5 . . . L 3 -27.31 5.007 -70.999 1 84.24 ? C15 PE5 202 C 1 
HETATM 26 C C16 PE5 . . . L 3 -28.637 4.324 -70.86 1 87.85 ? C16 PE5 202 C 1 
HETATM 27 O O52 PE5 . . . L 3 -29.618 5.004 -71.563 1 88.32 ? O52 PE5 202 C 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#