data_4N3C # _model_server_result.job_id dUZxZcs_9mG2a9eAVpsdDQ _model_server_result.datetime_utc '2024-11-06 17:39:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4n3c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1201}' # _entry.id 4N3C # _exptl.entry_id 4N3C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 607.354 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4N3C _cell.length_a 98.88 _cell.length_b 98.88 _cell.length_c 365.93 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4N3C _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H27 N3 O17 P2' _chem_comp.formula_weight 607.354 _chem_comp.id UD1 _chem_comp.mon_nstd_flag . _chem_comp.name URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1' C2' UD1 sing 358 n n C1' O1' UD1 sing 359 n n C1' O5' UD1 sing 360 n n C1' H1' UD1 sing 361 n n C2' C3' UD1 sing 362 n n C2' N2' UD1 sing 363 n n C2' H2' UD1 sing 364 n n C3' C4' UD1 sing 365 n n C3' O3' UD1 sing 366 n n C3' H3' UD1 sing 367 n n C4' C5' UD1 sing 368 n n C4' O4' UD1 sing 369 n n C4' H4' UD1 sing 370 n n C5' C6' UD1 sing 371 n n C5' O5' UD1 sing 372 n n C5' H5' UD1 sing 373 n n C6' O6' UD1 sing 374 n n C6' "H6'1" UD1 sing 375 n n C6' "H6'2" UD1 sing 376 n n C7' C8' UD1 sing 377 n n C7' N2' UD1 sing 378 n n C7' O7' UD1 doub 379 n n C8' "H8'1" UD1 sing 380 n n C8' "H8'2" UD1 sing 381 n n C8' "H8'3" UD1 sing 382 n n N2' HN2' UD1 sing 383 n n O1' PB UD1 sing 384 n n O3' HO3' UD1 sing 385 n n O4' HO4' UD1 sing 386 n n O6' HO6' UD1 sing 387 n n N1 C2 UD1 sing 388 n n N1 C6 UD1 sing 389 n n N1 C1B UD1 sing 390 n n C2 N3 UD1 sing 391 n n C2 O2 UD1 doub 392 n n N3 C4 UD1 sing 393 n n N3 HN3 UD1 sing 394 n n C4 C5 UD1 sing 395 n n C4 O4 UD1 doub 396 n n C5 C6 UD1 doub 397 n n C5 H5 UD1 sing 398 n n C6 H6 UD1 sing 399 n n C1B C2B UD1 sing 400 n n C1B O4B UD1 sing 401 n n C1B H1B UD1 sing 402 n n C2B O2' UD1 sing 403 n n C2B C3B UD1 sing 404 n n C2B H2B UD1 sing 405 n n O2' HO2' UD1 sing 406 n n C3B C4B UD1 sing 407 n n C3B O3B UD1 sing 408 n n C3B H3B UD1 sing 409 n n C4B O4B UD1 sing 410 n n C4B C5B UD1 sing 411 n n C4B H4B UD1 sing 412 n n O3B HO3A UD1 sing 413 n n C5B O5B UD1 sing 414 n n C5B "H5'1" UD1 sing 415 n n C5B "H5'2" UD1 sing 416 n n O5B PA UD1 sing 417 n n PA O1A UD1 doub 418 n n PA O2A UD1 sing 419 n n PA O3A UD1 sing 420 n n O2A HOA2 UD1 sing 421 n n O3A PB UD1 sing 422 n n PB O1B UD1 doub 423 n n PB O2B UD1 sing 424 n n O2B HOB2 UD1 sing 425 n n # _atom_sites.entry_id 4N3C _atom_sites.fract_transf_matrix[1][1] 0.010113 _atom_sites.fract_transf_matrix[1][2] 0.005839 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011678 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002733 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 UD1 A 1 1201 1201 UD1 UD1 . D 4 HOH A 1 1301 1 HOH HOH . D 4 HOH A 2 1302 2 HOH HOH . D 4 HOH A 3 1303 3 HOH HOH . D 4 HOH A 4 1304 4 HOH HOH . D 4 HOH A 5 1305 5 HOH HOH . D 4 HOH A 6 1306 6 HOH HOH . D 4 HOH A 7 1307 7 HOH HOH . D 4 HOH A 8 1308 9 HOH HOH . D 4 HOH A 9 1309 10 HOH HOH . D 4 HOH A 10 1310 11 HOH HOH . D 4 HOH A 11 1311 13 HOH HOH . D 4 HOH A 12 1312 14 HOH HOH . D 4 HOH A 13 1313 15 HOH HOH . D 4 HOH A 14 1314 16 HOH HOH . D 4 HOH A 15 1315 17 HOH HOH . D 4 HOH A 16 1316 18 HOH HOH . D 4 HOH A 17 1317 19 HOH HOH . D 4 HOH A 18 1318 20 HOH HOH . D 4 HOH A 19 1319 21 HOH HOH . D 4 HOH A 20 1320 23 HOH HOH . D 4 HOH A 21 1321 24 HOH HOH . D 4 HOH A 22 1322 25 HOH HOH . D 4 HOH A 23 1323 26 HOH HOH . D 4 HOH A 24 1324 27 HOH HOH . D 4 HOH A 25 1325 29 HOH HOH . D 4 HOH A 26 1326 30 HOH HOH . D 4 HOH A 27 1327 31 HOH HOH . D 4 HOH A 28 1328 32 HOH HOH . D 4 HOH A 29 1329 33 HOH HOH . D 4 HOH A 30 1330 35 HOH HOH . D 4 HOH A 31 1331 36 HOH HOH . D 4 HOH A 32 1332 37 HOH HOH . D 4 HOH A 33 1333 38 HOH HOH . D 4 HOH A 34 1334 39 HOH HOH . D 4 HOH A 35 1335 40 HOH HOH . D 4 HOH A 36 1336 41 HOH HOH . D 4 HOH A 37 1337 42 HOH HOH . D 4 HOH A 38 1338 43 HOH HOH . D 4 HOH A 39 1339 44 HOH HOH . D 4 HOH A 40 1340 45 HOH HOH . D 4 HOH A 41 1341 46 HOH HOH . D 4 HOH A 42 1342 47 HOH HOH . D 4 HOH A 43 1343 48 HOH HOH . D 4 HOH A 44 1344 50 HOH HOH . D 4 HOH A 45 1345 52 HOH HOH . D 4 HOH A 46 1346 53 HOH HOH . D 4 HOH A 47 1347 54 HOH HOH . D 4 HOH A 48 1348 55 HOH HOH . D 4 HOH A 49 1349 56 HOH HOH . D 4 HOH A 50 1350 57 HOH HOH . D 4 HOH A 51 1351 58 HOH HOH . D 4 HOH A 52 1352 59 HOH HOH . D 4 HOH A 53 1353 60 HOH HOH . D 4 HOH A 54 1354 61 HOH HOH . D 4 HOH A 55 1355 63 HOH HOH . D 4 HOH A 56 1356 66 HOH HOH . D 4 HOH A 57 1357 67 HOH HOH . D 4 HOH A 58 1358 68 HOH HOH . D 4 HOH A 59 1359 69 HOH HOH . D 4 HOH A 60 1360 70 HOH HOH . D 4 HOH A 61 1361 72 HOH HOH . D 4 HOH A 62 1362 73 HOH HOH . D 4 HOH A 63 1363 74 HOH HOH . D 4 HOH A 64 1364 75 HOH HOH . D 4 HOH A 65 1365 76 HOH HOH . D 4 HOH A 66 1366 78 HOH HOH . D 4 HOH A 67 1367 81 HOH HOH . D 4 HOH A 68 1368 82 HOH HOH . D 4 HOH A 69 1369 83 HOH HOH . D 4 HOH A 70 1370 85 HOH HOH . D 4 HOH A 71 1371 89 HOH HOH . D 4 HOH A 72 1372 90 HOH HOH . D 4 HOH A 73 1373 91 HOH HOH . D 4 HOH A 74 1374 92 HOH HOH . D 4 HOH A 75 1375 93 HOH HOH . D 4 HOH A 76 1376 94 HOH HOH . D 4 HOH A 77 1377 97 HOH HOH . D 4 HOH A 78 1378 98 HOH HOH . D 4 HOH A 79 1379 99 HOH HOH . D 4 HOH A 80 1380 100 HOH HOH . D 4 HOH A 81 1381 101 HOH HOH . D 4 HOH A 82 1382 103 HOH HOH . D 4 HOH A 83 1383 105 HOH HOH . D 4 HOH A 84 1384 107 HOH HOH . D 4 HOH A 85 1385 108 HOH HOH . D 4 HOH A 86 1386 109 HOH HOH . D 4 HOH A 87 1387 111 HOH HOH . D 4 HOH A 88 1388 113 HOH HOH . D 4 HOH A 89 1389 114 HOH HOH . D 4 HOH A 90 1390 117 HOH HOH . D 4 HOH A 91 1391 119 HOH HOH . D 4 HOH A 92 1392 122 HOH HOH . D 4 HOH A 93 1393 123 HOH HOH . D 4 HOH A 94 1394 124 HOH HOH . D 4 HOH A 95 1395 125 HOH HOH . D 4 HOH A 96 1396 126 HOH HOH . D 4 HOH A 97 1397 127 HOH HOH . E 4 HOH B 1 101 12 HOH HOH . E 4 HOH B 2 102 34 HOH HOH . E 4 HOH B 3 103 77 HOH HOH . E 4 HOH B 4 104 84 HOH HOH . E 4 HOH B 5 105 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1' UD1 . . . C 3 -2.459 -38.502 17.025 1 88.04 ? C1' UD1 1201 A 1 HETATM 2 C C2' UD1 . . . C 3 -3.369 -37.382 17.616 1 97.54 ? C2' UD1 1201 A 1 HETATM 3 C C3' UD1 . . . C 3 -2.843 -36.024 17.178 1 97.65 ? C3' UD1 1201 A 1 HETATM 4 C C4' UD1 . . . C 3 -1.415 -35.841 17.749 1 97.75 ? C4' UD1 1201 A 1 HETATM 5 C C5' UD1 . . . C 3 -0.51 -37.084 17.396 1 88.85 ? C5' UD1 1201 A 1 HETATM 6 C C6' UD1 . . . C 3 0.788 -37.093 18.225 1 88.59 ? C6' UD1 1201 A 1 HETATM 7 C C7' UD1 . . . C 3 -5.505 -38.609 17.744 1 97.11 ? C7' UD1 1201 A 1 HETATM 8 C C8' UD1 . . . C 3 -6.908 -38.681 17.22 1 97.33 ? C8' UD1 1201 A 1 HETATM 9 N N2' UD1 . . . C 3 -4.747 -37.6 17.216 1 97.34 ? N2' UD1 1201 A 1 HETATM 10 O O1' UD1 . . . C 3 -2.385 -38.467 15.655 1 87.28 ? O1' UD1 1201 A 1 HETATM 11 O O3' UD1 . . . C 3 -3.664 -35.039 17.721 1 97.5 ? O3' UD1 1201 A 1 HETATM 12 O O4' UD1 . . . C 3 -0.914 -34.678 17.157 1 97.65 ? O4' UD1 1201 A 1 HETATM 13 O O5' UD1 . . . C 3 -1.168 -38.331 17.62 1 88.58 ? O5' UD1 1201 A 1 HETATM 14 O O6' UD1 . . . C 3 0.479 -36.991 19.582 1 88.24 ? O6' UD1 1201 A 1 HETATM 15 O O7' UD1 . . . C 3 -5.086 -39.411 18.58 1 96.72 ? O7' UD1 1201 A 1 HETATM 16 N N1 UD1 . . . C 3 1.355 -45.961 11.931 1 35.25 ? N1 UD1 1201 A 1 HETATM 17 C C2 UD1 . . . C 3 2.339 -46.988 11.681 1 35.22 ? C2 UD1 1201 A 1 HETATM 18 N N3 UD1 . . . C 3 2.003 -48.017 10.785 1 35.29 ? N3 UD1 1201 A 1 HETATM 19 C C4 UD1 . . . C 3 0.733 -48.161 10.474 1 34.72 ? C4 UD1 1201 A 1 HETATM 20 C C5 UD1 . . . C 3 -0.272 -47.166 10.661 1 34.68 ? C5 UD1 1201 A 1 HETATM 21 C C6 UD1 . . . C 3 0.124 -46.044 11.338 1 34.97 ? C6 UD1 1201 A 1 HETATM 22 O O2 UD1 . . . C 3 3.418 -46.971 12.216 1 36.1 ? O2 UD1 1201 A 1 HETATM 23 O O4 UD1 . . . C 3 0.407 -49.231 9.737 1 34.63 ? O4 UD1 1201 A 1 HETATM 24 C C1B UD1 . . . C 3 1.65 -44.86 12.889 1 36.15 ? C1B UD1 1201 A 1 HETATM 25 C C2B UD1 . . . C 3 1.35 -43.436 12.368 1 36.79 ? C2B UD1 1201 A 1 HETATM 26 O O2' UD1 . . . C 3 2.417 -43.041 11.574 1 37.7 ? O2' UD1 1201 A 1 HETATM 27 C C3B UD1 . . . C 3 1.201 -42.702 13.717 1 36.9 ? C3B UD1 1201 A 1 HETATM 28 C C4B UD1 . . . C 3 0.624 -43.798 14.643 1 37.2 ? C4B UD1 1201 A 1 HETATM 29 O O4B UD1 . . . C 3 0.835 -45.042 13.981 1 36.74 ? O4B UD1 1201 A 1 HETATM 30 O O3B UD1 . . . C 3 2.481 -42.332 14.09 1 36.52 ? O3B UD1 1201 A 1 HETATM 31 C C5B UD1 . . . C 3 -0.889 -43.695 14.888 1 36.67 ? C5B UD1 1201 A 1 HETATM 32 O O5B UD1 . . . C 3 -0.999 -42.783 15.884 1 37.06 ? O5B UD1 1201 A 1 HETATM 33 P PA UD1 . . . C 3 -2.526 -41.987 16.094 1 34.25 ? PA UD1 1201 A 1 HETATM 34 O O1A UD1 . . . C 3 -2.377 -41.465 17.472 1 35.57 ? O1A UD1 1201 A 1 HETATM 35 O O2A UD1 . . . C 3 -3.434 -43.101 15.682 1 34 ? O2A UD1 1201 A 1 HETATM 36 O O3A UD1 . . . C 3 -2.571 -40.884 14.976 1 28.74 ? O3A UD1 1201 A 1 HETATM 37 P PB UD1 . . . C 3 -3.24 -39.54 14.529 1 39.83 ? PB UD1 1201 A 1 HETATM 38 O O1B UD1 . . . C 3 -4.669 -39.471 14.93 1 42.76 ? O1B UD1 1201 A 1 HETATM 39 O O2B UD1 . . . C 3 -2.785 -39.032 13.213 1 41.42 ? O2B UD1 1201 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 39 #