data_4N48 # _model_server_result.job_id ugDDSGJFBcKZ2VJXJYniAA _model_server_result.datetime_utc '2024-11-13 18:33:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4n48 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":101}' # _entry.id 4N48 # _exptl.entry_id 4N48 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 539.223 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90.23 _cell.angle_beta 97.83 _cell.angle_gamma 116.25 _cell.entry_id 4N48 _cell.length_a 52.209 _cell.length_b 60.038 _cell.length_c 87.045 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4N48 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,D,F,H,J,L 1 1 A,C,E,G,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O5' G 1 D G 1 1_555 G PG MGT . D MGT 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.598 ? covale ? covale2 D O5' G 1 G G 1 1_555 H PG MGT . G MGT 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 ? # _chem_comp.formula 'C11 H20 N5 O14 P3' _chem_comp.formula_weight 539.223 _chem_comp.id MGT _chem_comp.mon_nstd_flag n _chem_comp.name "7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G MGT doub 352 n n PG O2G MGT sing 353 n n PG O3G MGT sing 354 n n PG O3B MGT sing 355 n n O2G HOG2 MGT sing 356 n n O3G HOG3 MGT sing 357 n n O3B PB MGT sing 358 n n PB O1B MGT doub 359 n n PB O2B MGT sing 360 n n PB O3A MGT sing 361 n n O2B HOB2 MGT sing 362 n n O3A PA MGT sing 363 n n PA O1A MGT doub 364 n n PA O2A MGT sing 365 n n PA O5' MGT sing 366 n n O2A HOA2 MGT sing 367 n n O5' C5' MGT sing 368 n n C5' C4' MGT sing 369 n n C5' "H5'1" MGT sing 370 n n C5' "H5'2" MGT sing 371 n n C4' O4' MGT sing 372 n n C4' C3' MGT sing 373 n n C4' H4' MGT sing 374 n n O4' C1' MGT sing 375 n n C3' O3' MGT sing 376 n n C3' C2' MGT sing 377 n n C3' H3' MGT sing 378 n n O3' HO3' MGT sing 379 n n C2' O2' MGT sing 380 n n C2' C1' MGT sing 381 n n C2' H2' MGT sing 382 n n O2' HO2' MGT sing 383 n n C1' N9 MGT sing 384 n n C1' H1' MGT sing 385 n n N9 C8 MGT sing 386 n n N9 C4 MGT sing 387 n n C8 N7 MGT sing 388 n n C8 H81 MGT sing 389 n n C8 H82 MGT sing 390 n n N7 CM7 MGT sing 391 n n N7 C5 MGT sing 392 n n CM7 HM71 MGT sing 393 n n CM7 HM72 MGT sing 394 n n CM7 HM73 MGT sing 395 n n C5 C6 MGT sing 396 n n C5 C4 MGT doub 397 n n C6 O6 MGT doub 398 n n C6 N1 MGT sing 399 n n N1 C2 MGT sing 400 n n N1 HN1 MGT sing 401 n n C2 N2 MGT sing 402 n n C2 N3 MGT doub 403 n n N2 HN21 MGT sing 404 n n N2 HN22 MGT sing 405 n n N3 C4 MGT sing 406 n n # _atom_sites.entry_id 4N48 _atom_sites.fract_transf_matrix[1][1] 0.019154 _atom_sites.fract_transf_matrix[1][2] 0.009446 _atom_sites.fract_transf_matrix[1][3] 0.003326 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018571 _atom_sites.fract_transf_matrix[2][3] 0.001347 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011627 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SAM A 1 601 1 SAM SAM . F 3 SAM B 1 601 1 SAM SAM . G 4 MGT D 1 101 -1 MGT MGT . H 4 MGT G 1 101 -1 MGT MGT . I 5 HOH A 1 701 1 HOH HOH . I 5 HOH A 2 702 2 HOH HOH . I 5 HOH A 3 703 3 HOH HOH . I 5 HOH A 4 704 14 HOH HOH . I 5 HOH A 5 705 23 HOH HOH . I 5 HOH A 6 706 34 HOH HOH . I 5 HOH A 7 707 39 HOH HOH . I 5 HOH A 8 708 73 HOH HOH . I 5 HOH A 9 709 143 HOH HOH . I 5 HOH A 10 710 177 HOH HOH . I 5 HOH A 11 711 304 HOH HOH . I 5 HOH A 12 712 386 HOH HOH . I 5 HOH A 13 713 387 HOH HOH . I 5 HOH A 14 714 388 HOH HOH . I 5 HOH A 15 715 389 HOH HOH . I 5 HOH A 16 716 391 HOH HOH . I 5 HOH A 17 717 392 HOH HOH . I 5 HOH A 18 718 396 HOH HOH . I 5 HOH A 19 719 397 HOH HOH . I 5 HOH A 20 720 398 HOH HOH . I 5 HOH A 21 721 399 HOH HOH . I 5 HOH A 22 722 400 HOH HOH . I 5 HOH A 23 723 401 HOH HOH . I 5 HOH A 24 724 402 HOH HOH . I 5 HOH A 25 725 403 HOH HOH . I 5 HOH A 26 726 404 HOH HOH . I 5 HOH A 27 727 408 HOH HOH . I 5 HOH A 28 728 409 HOH HOH . I 5 HOH A 29 729 410 HOH HOH . I 5 HOH A 30 730 411 HOH HOH . I 5 HOH A 31 731 412 HOH HOH . I 5 HOH A 32 732 413 HOH HOH . I 5 HOH A 33 733 414 HOH HOH . I 5 HOH A 34 734 415 HOH HOH . I 5 HOH A 35 735 416 HOH HOH . I 5 HOH A 36 736 444 HOH HOH . I 5 HOH A 37 737 445 HOH HOH . I 5 HOH A 38 738 446 HOH HOH . I 5 HOH A 39 739 448 HOH HOH . I 5 HOH A 40 740 449 HOH HOH . I 5 HOH A 41 741 451 HOH HOH . I 5 HOH A 42 742 457 HOH HOH . I 5 HOH A 43 743 458 HOH HOH . I 5 HOH A 44 744 460 HOH HOH . I 5 HOH A 45 745 461 HOH HOH . I 5 HOH A 46 746 462 HOH HOH . I 5 HOH A 47 747 474 HOH HOH . I 5 HOH A 48 748 479 HOH HOH . I 5 HOH A 49 749 480 HOH HOH . I 5 HOH A 50 750 481 HOH HOH . I 5 HOH A 51 751 482 HOH HOH . I 5 HOH A 52 752 483 HOH HOH . I 5 HOH A 53 753 484 HOH HOH . I 5 HOH A 54 754 485 HOH HOH . I 5 HOH A 55 755 494 HOH HOH . I 5 HOH A 56 756 495 HOH HOH . I 5 HOH A 57 757 496 HOH HOH . J 5 HOH B 1 701 4 HOH HOH . J 5 HOH B 2 702 6 HOH HOH . J 5 HOH B 3 703 8 HOH HOH . J 5 HOH B 4 704 9 HOH HOH . J 5 HOH B 5 705 12 HOH HOH . J 5 HOH B 6 706 18 HOH HOH . J 5 HOH B 7 707 25 HOH HOH . J 5 HOH B 8 708 26 HOH HOH . J 5 HOH B 9 709 30 HOH HOH . J 5 HOH B 10 710 61 HOH HOH . J 5 HOH B 11 711 88 HOH HOH . J 5 HOH B 12 712 109 HOH HOH . J 5 HOH B 13 713 220 HOH HOH . J 5 HOH B 14 714 417 HOH HOH . J 5 HOH B 15 715 418 HOH HOH . J 5 HOH B 16 716 419 HOH HOH . J 5 HOH B 17 717 420 HOH HOH . J 5 HOH B 18 718 421 HOH HOH . J 5 HOH B 19 719 423 HOH HOH . J 5 HOH B 20 720 424 HOH HOH . J 5 HOH B 21 721 425 HOH HOH . J 5 HOH B 22 722 426 HOH HOH . J 5 HOH B 23 723 427 HOH HOH . J 5 HOH B 24 724 428 HOH HOH . J 5 HOH B 25 725 429 HOH HOH . J 5 HOH B 26 726 430 HOH HOH . J 5 HOH B 27 727 432 HOH HOH . J 5 HOH B 28 728 433 HOH HOH . J 5 HOH B 29 729 435 HOH HOH . J 5 HOH B 30 730 436 HOH HOH . J 5 HOH B 31 731 437 HOH HOH . J 5 HOH B 32 732 439 HOH HOH . J 5 HOH B 33 733 443 HOH HOH . J 5 HOH B 34 734 463 HOH HOH . J 5 HOH B 35 735 464 HOH HOH . J 5 HOH B 36 736 465 HOH HOH . J 5 HOH B 37 737 466 HOH HOH . J 5 HOH B 38 738 470 HOH HOH . J 5 HOH B 39 739 471 HOH HOH . J 5 HOH B 40 740 472 HOH HOH . J 5 HOH B 41 741 473 HOH HOH . J 5 HOH B 42 742 477 HOH HOH . J 5 HOH B 43 743 486 HOH HOH . J 5 HOH B 44 744 487 HOH HOH . J 5 HOH B 45 745 489 HOH HOH . J 5 HOH B 46 746 490 HOH HOH . J 5 HOH B 47 747 491 HOH HOH . J 5 HOH B 48 748 497 HOH HOH . J 5 HOH B 49 749 498 HOH HOH . J 5 HOH B 50 750 499 HOH HOH . K 5 HOH D 1 201 390 HOH HOH . K 5 HOH D 2 202 393 HOH HOH . K 5 HOH D 3 203 394 HOH HOH . K 5 HOH D 4 204 405 HOH HOH . K 5 HOH D 5 205 406 HOH HOH . K 5 HOH D 6 206 407 HOH HOH . K 5 HOH D 7 207 450 HOH HOH . K 5 HOH D 8 208 467 HOH HOH . K 5 HOH D 9 209 475 HOH HOH . K 5 HOH D 10 210 492 HOH HOH . L 5 HOH G 1 201 422 HOH HOH . L 5 HOH G 2 202 434 HOH HOH . L 5 HOH G 3 203 438 HOH HOH . L 5 HOH G 4 204 440 HOH HOH . L 5 HOH G 5 205 453 HOH HOH . L 5 HOH G 6 206 454 HOH HOH . L 5 HOH G 7 207 455 HOH HOH . L 5 HOH G 8 208 468 HOH HOH . L 5 HOH G 9 209 469 HOH HOH . L 5 HOH G 10 210 476 HOH HOH . L 5 HOH G 11 211 478 HOH HOH . L 5 HOH G 12 212 488 HOH HOH . L 5 HOH G 13 213 493 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG MGT . . . H 4 10.21 22.819 29.764 1 25.12 ? PG MGT 101 G 1 HETATM 2 O O1G MGT . . . H 4 11.177 21.669 30.298 1 19.74 ? O1G MGT 101 G 1 HETATM 3 O O2G MGT . . . H 4 8.955 22.803 30.541 1 26.24 ? O2G MGT 101 G 1 HETATM 4 O O3B MGT . . . H 4 10.905 24.234 29.936 1 21.37 ? O3B MGT 101 G 1 HETATM 5 P PB MGT . . . H 4 10.356 25.447 29.145 1 29.39 ? PB MGT 101 G 1 HETATM 6 O O1B MGT . . . H 4 10.914 25.435 27.78 1 24.08 ? O1B MGT 101 G 1 HETATM 7 O O2B MGT . . . H 4 8.886 25.348 29.088 1 26.06 ? O2B MGT 101 G 1 HETATM 8 O O3A MGT . . . H 4 10.797 26.82 29.835 1 28.33 ? O3A MGT 101 G 1 HETATM 9 P PA MGT . . . H 4 10.322 27.154 31.3 1 24.83 ? PA MGT 101 G 1 HETATM 10 O O1A MGT . . . H 4 9.391 28.358 31.297 1 34.27 ? O1A MGT 101 G 1 HETATM 11 O O2A MGT . . . H 4 9.591 26.001 31.846 1 26.38 ? O2A MGT 101 G 1 HETATM 12 O O5' MGT . . . H 4 11.615 27.474 32.203 1 27.21 ? O5' MGT 101 G 1 HETATM 13 C C5' MGT . . . H 4 12.832 26.907 31.863 1 27.2 ? C5' MGT 101 G 1 HETATM 14 C C4' MGT . . . H 4 13.488 26.065 32.812 1 25.69 ? C4' MGT 101 G 1 HETATM 15 O O4' MGT . . . H 4 13.232 26.534 34.167 1 27.9 ? O4' MGT 101 G 1 HETATM 16 C C3' MGT . . . H 4 12.948 24.706 32.735 1 23.34 ? C3' MGT 101 G 1 HETATM 17 O O3' MGT . . . H 4 13.961 23.781 33.052 1 19.76 ? O3' MGT 101 G 1 HETATM 18 C C2' MGT . . . H 4 11.897 24.712 33.737 1 24.37 ? C2' MGT 101 G 1 HETATM 19 O O2' MGT . . . H 4 11.628 23.42 34.206 1 25.05 ? O2' MGT 101 G 1 HETATM 20 C C1' MGT . . . H 4 12.459 25.568 34.811 1 26.18 ? C1' MGT 101 G 1 HETATM 21 N N9 MGT . . . H 4 11.407 26.206 35.588 1 26.81 ? N9 MGT 101 G 1 HETATM 22 C C8 MGT . . . H 4 10.252 26.705 35.132 1 30.51 ? C8 MGT 101 G 1 HETATM 23 N N7 MGT . . . H 4 9.537 27.218 36.172 1 30.94 ? N7 MGT 101 G 1 HETATM 24 C CM7 MGT . . . H 4 8.221 27.839 36.053 1 29.17 ? CM7 MGT 101 G 1 HETATM 25 C C5 MGT . . . H 4 10.255 27.044 37.307 1 30.99 ? C5 MGT 101 G 1 HETATM 26 C C6 MGT . . . H 4 10.082 27.346 38.676 1 30.79 ? C6 MGT 101 G 1 HETATM 27 O O6 MGT . . . H 4 8.927 27.987 39.165 1 31.36 ? O6 MGT 101 G 1 HETATM 28 N N1 MGT . . . H 4 11.063 27.005 39.555 1 36.9 ? N1 MGT 101 G 1 HETATM 29 C C2 MGT . . . H 4 12.19 26.383 39.147 1 34.63 ? C2 MGT 101 G 1 HETATM 30 N N2 MGT . . . H 4 13.219 26.03 40.137 1 32.66 ? N2 MGT 101 G 1 HETATM 31 N N3 MGT . . . H 4 12.393 26.08 37.854 1 34.09 ? N3 MGT 101 G 1 HETATM 32 C C4 MGT . . . H 4 11.451 26.399 36.927 1 31.61 ? C4 MGT 101 G 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 24 _model_server_stats.element_count 32 #