data_4N4D
#
_model_server_result.job_id            OATDbnk3Ri7EgCO1z0ZEaQ 
_model_server_result.datetime_utc      '2024-11-26 22:50:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4n4d 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":201}' 
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_entry.id    4N4D 
#
_exptl.entry_id    4N4D 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              229.278 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            {3-[(4-amino-2-methylpyrimidin-5-yl)methyl]phenyl}methanol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.17 
_cell.angle_gamma         90 
_cell.entry_id            4N4D 
_cell.length_a            63.16 
_cell.length_b            84.26 
_cell.length_c            127.25 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 4N4D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,GA 1 1 
B,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,HA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 U N N 
#
_chem_comp.formula           'C13 H15 N3 O' 
_chem_comp.formula_weight    229.278 
_chem_comp.id                XX8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              {3-[(4-amino-2-methylpyrimidin-5-yl)methyl]phenyl}methanol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C30 XX8 doub 588 n y 
C2 C01 XX8 sing 589 n y 
C30 C28 XX8 sing 590 n y 
C7A C01 XX8 sing 591 n n 
C7A C5A XX8 sing 592 n n 
C01 C4 XX8 doub 593 n y 
C28 C5 XX8 doub 594 n y 
C5A C6A XX8 doub 595 n y 
C5A C4A XX8 sing 596 n y 
C4 C5 XX8 sing 597 n y 
C6A N1A XX8 sing 598 n y 
C5 C6 XX8 sing 599 n n 
N4A C4A XX8 sing 600 n n 
C4A N3A XX8 doub 601 n y 
N1A C2A XX8 doub 602 n y 
C6 O01 XX8 sing 603 n n 
N3A C2A XX8 sing 604 n y 
C2A CM2 XX8 sing 605 n n 
CM2 H1 XX8 sing 606 n n 
CM2 H2 XX8 sing 607 n n 
CM2 H3 XX8 sing 608 n n 
N4A H4 XX8 sing 609 n n 
N4A H5 XX8 sing 610 n n 
O01 H6 XX8 sing 611 n n 
C6 H7 XX8 sing 612 n n 
C6 H8 XX8 sing 613 n n 
C2 H9 XX8 sing 614 n n 
C4 H10 XX8 sing 615 n n 
C7A H11 XX8 sing 616 n n 
C7A H12 XX8 sing 617 n n 
C6A H13 XX8 sing 618 n n 
C28 H14 XX8 sing 619 n n 
C30 H15 XX8 sing 620 n n 
#
_atom_sites.entry_id                     4N4D 
_atom_sites.fract_transf_matrix[1][1]    0.015833 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001155 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011868 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007879 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 XX8 A 1 201 2 XX8 XX8 . 
D 3 BNG A 1 202 4 BNG BNG . 
E 3 BNG A 1 203 5 BNG BNG . 
F 3 BNG A 1 204 6 BNG BNG . 
G 4 PG0 A 1 205 1 PG0 PG0 . 
H 4 PG0 A 1 206 2 PG0 PG0 . 
I 5 PEG A 1 207 3 PEG PEG . 
J 5 PEG A 1 208 8 PEG PEG . 
K 5 PEG A 1 209 13 PEG PEG . 
L 5 PEG A 1 210 17 PEG PEG . 
M 5 PEG A 1 211 18 PEG PEG . 
N 5 PEG A 1 212 19 PEG PEG . 
O 6 PG4 A 1 213 2 PG4 PG4 . 
P 7 PGE A 1 214 2 PGE PGE . 
Q 7 PGE A 1 215 3 PGE PGE . 
R 7 PGE A 1 216 5 PGE PGE . 
S 7 PGE A 1 217 6 PGE PGE . 
T 8 1PE A 1 218 1 1PE 1PE . 
U 2 XX8 B 1 201 1 XX8 XX8 . 
V 3 BNG B 1 202 2 BNG BNG . 
W 3 BNG B 1 203 3 BNG BNG . 
X 4 PG0 B 1 204 4 PG0 PG0 . 
Y 5 PEG B 1 205 14 PEG PEG . 
Z 5 PEG B 1 206 20 PEG PEG . 
AA 6 PG4 B 1 207 4 PG4 PG4 . 
BA 9 P33 B 1 208 3 P33 P33 . 
CA 7 PGE B 1 209 4 PGE PGE . 
DA 7 PGE B 1 210 7 PGE PGE . 
EA 8 1PE B 1 211 2 1PE 1PE . 
FA 10 CL B 1 212 1 CL CL . 
GA 11 HOH A 1 301 2 HOH HOH . 
GA 11 HOH A 2 302 9 HOH HOH . 
GA 11 HOH A 3 303 10 HOH HOH . 
GA 11 HOH A 4 304 37 HOH HOH . 
GA 11 HOH A 5 305 38 HOH HOH . 
GA 11 HOH A 6 306 40 HOH HOH . 
GA 11 HOH A 7 307 41 HOH HOH . 
GA 11 HOH A 8 308 42 HOH HOH . 
GA 11 HOH A 9 309 44 HOH HOH . 
GA 11 HOH A 10 310 45 HOH HOH . 
GA 11 HOH A 11 311 46 HOH HOH . 
GA 11 HOH A 12 312 47 HOH HOH . 
GA 11 HOH A 13 313 48 HOH HOH . 
GA 11 HOH A 14 314 49 HOH HOH . 
GA 11 HOH A 15 315 50 HOH HOH . 
GA 11 HOH A 16 316 51 HOH HOH . 
GA 11 HOH A 17 317 52 HOH HOH . 
GA 11 HOH A 18 318 67 HOH HOH . 
GA 11 HOH A 19 319 71 HOH HOH . 
GA 11 HOH A 20 320 72 HOH HOH . 
HA 11 HOH B 1 301 1 HOH HOH . 
HA 11 HOH B 2 302 12 HOH HOH . 
HA 11 HOH B 3 303 13 HOH HOH . 
HA 11 HOH B 4 304 14 HOH HOH . 
HA 11 HOH B 5 305 15 HOH HOH . 
HA 11 HOH B 6 306 16 HOH HOH . 
HA 11 HOH B 7 307 18 HOH HOH . 
HA 11 HOH B 8 308 19 HOH HOH . 
HA 11 HOH B 9 309 20 HOH HOH . 
HA 11 HOH B 10 310 21 HOH HOH . 
HA 11 HOH B 11 311 34 HOH HOH . 
HA 11 HOH B 12 312 36 HOH HOH . 
HA 11 HOH B 13 313 54 HOH HOH . 
HA 11 HOH B 14 314 55 HOH HOH . 
HA 11 HOH B 15 315 56 HOH HOH . 
HA 11 HOH B 16 316 58 HOH HOH . 
HA 11 HOH B 17 317 59 HOH HOH . 
HA 11 HOH B 18 318 60 HOH HOH . 
HA 11 HOH B 19 319 61 HOH HOH . 
HA 11 HOH B 20 320 62 HOH HOH . 
HA 11 HOH B 21 321 63 HOH HOH . 
HA 11 HOH B 22 322 64 HOH HOH . 
HA 11 HOH B 23 323 65 HOH HOH . 
HA 11 HOH B 24 324 73 HOH HOH . 
HA 11 HOH B 25 325 74 HOH HOH . 
HA 11 HOH B 26 326 75 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CM2 XX8 . . . U 2 19.781 1.303 21.468 1 36.45 ? CM2 XX8 201 B 1 
HETATM 2 N N4A XX8 . . . U 2 20.363 5.186 18.516 1 45.64 ? N4A XX8 201 B 1 
HETATM 3 O O01 XX8 . . . U 2 24.956 5.77 20.809 1 37.09 ? O01 XX8 201 B 1 
HETATM 4 C C6 XX8 . . . U 2 25.23 6.718 19.708 1 37.9 ? C6 XX8 201 B 1 
HETATM 5 C C2 XX8 . . . U 2 23.875 5.331 15.85 1 38.72 ? C2 XX8 201 B 1 
HETATM 6 C C5 XX8 . . . U 2 24.721 6.21 18.39 1 36.11 ? C5 XX8 201 B 1 
HETATM 7 C C4 XX8 . . . U 2 23.735 5.202 18.297 1 44.26 ? C4 XX8 201 B 1 
HETATM 8 C C01 XX8 . . . U 2 23.326 4.764 16.972 1 47.36 ? C01 XX8 201 B 1 
HETATM 9 C C7A XX8 . . . U 2 22.234 3.668 16.739 1 37.52 ? C7A XX8 201 B 1 
HETATM 10 C C4A XX8 . . . U 2 20.691 3.815 18.825 1 49.57 ? C4A XX8 201 B 1 
HETATM 11 N N3A XX8 . . . U 2 20.121 3.215 19.936 1 54.87 ? N3A XX8 201 B 1 
HETATM 12 C C2A XX8 . . . U 2 20.415 1.959 20.237 1 48.13 ? C2A XX8 201 B 1 
HETATM 13 N N1A XX8 . . . U 2 21.255 1.235 19.491 1 41.26 ? N1A XX8 201 B 1 
HETATM 14 C C6A XX8 . . . U 2 21.837 1.744 18.365 1 40.27 ? C6A XX8 201 B 1 
HETATM 15 C C5A XX8 . . . U 2 21.582 3.085 17.997 1 44.22 ? C5A XX8 201 B 1 
HETATM 16 C C28 XX8 . . . U 2 25.271 6.748 17.28 1 35.1 ? C28 XX8 201 B 1 
HETATM 17 C C30 XX8 . . . U 2 24.858 6.307 15.972 1 42.7 ? C30 XX8 201 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           705 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           17 
#